LOCUS       XM_039091566            3619 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphoribosyl pyrophosphate
            amidotransferase (Ppat), transcript variant X1, mRNA.
ACCESSION   XM_039091566
VERSION     XM_039091566.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091566.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3619
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3619
                     /gene="Ppat"
                     /gene_synonym="Atase"
                     /note="phosphoribosyl pyrophosphate amidotransferase;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 41 ESTs, 4 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 39 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:117544"
                     /db_xref="RGD:620237"
     CDS             68..1675
                     /gene="Ppat"
                     /gene_synonym="Atase"
                     /codon_start=1
                     /product="amidophosphoribosyltransferase isoform X1"
                     /protein_id="XP_038947494.1"
                     /db_xref="GeneID:117544"
                     /db_xref="RGD:620237"
                     /translation="MELEESGIREECGVFGCIASGDWPTQLDVPHVITLGLVGLQHRG
                     QESAGIVTSDGSSVPKFRVHKGMGLVNHVFTEDNLKKLYVSNLGIGHTRYATTGKCEL
                     ENCQPFVVETLHGKIAVAHNGELVNAARLRKKLLRHGIGLSTSSDSEMITQLLAYTPP
                     QEQDDTPDWVARIKNLMKEAPAAYSLVIMHRDVIYAVRDPYGNRPLCIGRLMPVSDIN
                     DKGSFLNLKIAGSRASAAFTEKKSSETEGWVVSSESCSFLSIGARYCHEVKPGEIVEI
                     SRHGVRTLDIIPRSNGDPVAFCIFEYVYFARPDSMFEDQMVYTVRYRCGQQLAVEAPV
                     EADLVSTVPESATPAALGYATKCGLPYVEVLCKNRYVGRTFIQPNMRLRQLGVAKKFG
                     VLSDNFKGKRIVLIDDSIVRGNTISPIIKLLKESGAKEVHIRVASPPIKHPCFMGINI
                     PTKEELIANKPEFEYLAEYLGANSVVYLSVEGLVSSVQQEIKFKKQKVKKRDITIQEN
                     GNGLEYFEKTGHCTACLTGQYPVDLEW"
ORIGIN      
        1 cggacagctg gttggcgctt ggaccacgcc gcagcagcag gtccctccac gtgctttcgg
       61 cggcgccatg gaactggagg agtcggggat ccgtgaggaa tgtggtgtgt tcgggtgcat
      121 cgcttctgga gactggccca cgcagctaga tgtgccacat gtgatcactc tgggactcgt
      181 ggggcttcag caccgaggtc aggagagcgc tggtattgtg accagtgatg ggagttcagt
      241 gcctaaattc agggtgcata agggaatggg ccttgtaaat catgttttta ccgaagacaa
      301 tttgaagaaa ttgtatgtct caaatcttgg aatcggacat acgcggtacg ccaccacagg
      361 gaagtgtgag ctggaaaatt gccagccgtt tgttgttgag actctgcatg ggaaaatagc
      421 tgtggcccat aacggagagc tggtgaacgc agctcggctg aggaagaagc ttctgcggca
      481 tggtattggg ctttccacat cctccgatag tgaaatgatt acccagttac tcgcatatac
      541 ccctcctcag gaacaagatg atactccaga ctgggtagca agaattaaga acttaatgaa
      601 ggaagcgccc gcagcctact ccctggtcat aatgcacagg gacgtcattt acgcagtgcg
      661 agatccatac ggaaatcgtc ctctatgcat cggccgtctt atgccagttt ctgacataaa
      721 tgacaaaggg tctttcctga acttgaagat tgctggaagc cgagcctcgg ctgcatttac
      781 agagaaaaag tcttcagaga ctgaaggatg ggtggtgtcc tcagagtctt gcagcttttt
      841 atctattggt gcgagatatt gccatgaagt gaagcctggg gaaattgtag aaatatccag
      901 acatggtgtc agaactcttg atataattcc aaggtctaat ggagacccag tggctttttg
      961 tatcttcgaa tatgtttatt ttgcaagacc agatagtatg tttgaagacc agatggttta
     1021 tacggtaagg taccggtgtg gccagcagct ggcagttgaa gcaccagtgg aggcggacct
     1081 ggtcagcaca gttccagaat ctgccacgcc tgcggccctg gggtatgcga caaagtgtgg
     1141 gctgccatat gtggaggtgc tgtgtaagaa ccggtatgta ggaagaacct tcattcagcc
     1201 aaacatgagg ctaagacaac ttggggttgc aaagaaattc ggcgtgttgt ctgacaactt
     1261 taaaggcaaa agaattgttc tcatagatga ttccattgtg agaggcaata ctatctcacc
     1321 catcataaaa ctcctcaaag aatccggtgc aaaggaggta cacattcgag tcgcttcgcc
     1381 accaataaaa catccgtgct tcatgggaat aaacattcct acaaaagaag agcttatagc
     1441 caataagccc gaatttgagt atcttgcaga gtaccttgga gcaaacagcg ttgtgtatct
     1501 gtcagtggaa ggactagttt cgtctgtgca acaagaaata aagttcaaga agcagaaagt
     1561 taaaaagcgt gatatcacaa ttcaagaaaa tggaaatggt ctggagtatt ttgagaagac
     1621 gggacactgt acggcttgcc tcactggcca gtaccctgtg gatctggaat ggtagctgcc
     1681 tggaccgatg tgctgcttcc agactgaaag gtcatcaaga agtggtttac atgtgttcct
     1741 cagttggtac aaaatggaca ccacttgctt atgtattata ccttaagttt tgagattttc
     1801 tgaggtcact gaattgctat aattgaatca taaagattac atgtaatgcg acatgtgggg
     1861 attctttttg tataaggact gacttttcac ccaagagaag gcaggaagtg gcatttccca
     1921 gacccatgct tgaatggttc taaagaggtg agatagggag gttgtgtgcc caggacagga
     1981 agctttataa agtttcatga aaagcttgaa ttcattgtgc cccatatgta tctagtctat
     2041 gcagtcaagt ctgcagttat ggccttggtc tttgattctt ccaccccata cacacatgta
     2101 tggctctggg gaccagtgta caactcctaa aaaatgaaaa cctatgtgga aagctgaggc
     2161 aggagagtcc tgagttcaag gccaacctgg gttttcctgt ctcaagataa agaacctctt
     2221 tctgtgcctc ggactccaca tctgtttcct aagtcattca taaacttaat gcttagcggg
     2281 aacttgtgtg tttgtctggg aggcttagag ctgccgtttt acccctgctt ctttaccatg
     2341 catggtcagt agcttcagaa gctaatggta attagctttc actaaattag ttttcagttt
     2401 ccttgtgatg gaggtttgca gaccttttcc atctctttgg gatataccag aacgactgag
     2461 aaatctatct ggagccctgt ttttctacac ttgacagaaa atatttagcc tagcaaataa
     2521 cttagtaagt acattggaaa gagaaaattt taatttcaag taagccttta tccttgattt
     2581 gattaaactt ggctgtttga atgagtgctt gatcatttac agaactgtgt acttgtatac
     2641 atgtatgcat ttggtttaaa cagagggaat agagacacag tagggccgat tttgtttaaa
     2701 ggctgagggg acagccactg tttggggaat tagattgcct gtacccaagc gttagctcat
     2761 gatcatgttt tttctaattt tttttgttag gtctagtgac atttttaatt tttttatgat
     2821 gcagatttag tggattgagg tgatttacta actcctgttt gtgtgggatt tttcacatgg
     2881 aaaaataatt gtctctatat tgccaaaatt tgctactttc caaacccact tagaaatata
     2941 atatttatta aaaactgaaa tcattagtcc acatttggta tatagtgtgg tgtgtcacat
     3001 atggcaggtc aaaataaact gttaggactt cgaggtcatg tgctgcgtgc ggtgcctgag
     3061 gttgtcctgt ggcatagaca caggctggcc tttcacagcc ctggggccat tttagtgggt
     3121 gcaacctcct gtgttacatg cattgtgtgt aatggcggcg tggaggggta aggccgttag
     3181 gtcagttttt aaatggcctt atttaaattt gatgttttac aaagaaactc agggaaggta
     3241 ctacaaccaa aatctctaat ttgacttttg tgttccacag tttttatttt gttttattgg
     3301 aatactttta taaagggaaa taataaccat ggtcgtttgt acaactttct taattatttc
     3361 ttcattgtta ccttttattt tacaagtttc tgaatatgga ttaaattaac attttaccag
     3421 tttcaagcct tattttatct gctttaaatg tatataacta gagtactata tgctgaaaag
     3481 atgaaaaatg tgtttgaaga cagttaacgt cctaaactaa tgtaagccta ctttttgttt
     3541 tgtatgtgcc tgtgtggttt tttgtttttt tgcaacaaat atatgtaata aacgtgttta
     3601 tatgtgtgct ttttaaaaa
//
