LOCUS       NM_001011980            1659 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus peter pan homolog (Ppan), mRNA.
ACCESSION   NM_001011980 XM_216610
VERSION     NM_001011980.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1659)
  AUTHORS   Beausoleil SA, Jedrychowski M, Schwartz D, Elias JE, Villen J, Li
            J, Cohn MA, Cantley LC and Gygi SP.
  TITLE     Large-scale characterization of HeLa cell nuclear phosphoproteins
  JOURNAL   Proc Natl Acad Sci U S A 101 (33), 12130-12135 (2004)
   PUBMED   15302935
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC089842.1.
            
            On Feb 11, 2005 this sequence version replaced XM_216610.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089842.1, SRR8487231.46592.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q13"
     gene            1..1659
                     /gene="Ppan"
                     /note="peter pan homolog"
                     /db_xref="GeneID:298699"
                     /db_xref="RGD:1306325"
     exon            1..106
                     /gene="Ppan"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..1501
                     /gene="Ppan"
                     /codon_start=1
                     /product="suppressor of SWI4 1 homolog"
                     /protein_id="NP_001011980.1"
                     /db_xref="GeneID:298699"
                     /db_xref="RGD:1306325"
                     /translation="MGQSGRSRHQKRARAQAQLRNLEAYAAQPHSFVFTRGRAGRSVQ
                     QLSLDVRRVLEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLVLSKTDSSVYLKLMRL
                     PGGPTLTFQINKYTLIRDVVSSLRRHRMHEQQFNHPPLLILNSFGTPGMHVKLMATMF
                     QNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSIKVVPVGASRGMKKLLQEKF
                     PNMSRLQDISELLASGVGLSESEVEPDGEHNTTELPQAVAGRGNMQAQQSAVRLTEIG
                     PRMTLQLIKIQEGVGNGNVLFHNFVHKTEEELQAILAAKEEKLRLKAQRQNQQAENLK
                     RKQELREAHKKKSLAGIKRARAKADGDSDAEDPGAPPEAVGMSQLEEEEDDAEYFRQA
                     VGEEPDEDLFPTVAKRRRQGGPVGKKRPGKEQRPGNKGRGQSGNWQALKPHGRSQRVK
                     TKLGPRARSRDLGPPSRKGP"
     exon            107..277
                     /gene="Ppan"
                     /inference="alignment:Splign:2.1.0"
     exon            278..379
                     /gene="Ppan"
                     /inference="alignment:Splign:2.1.0"
     exon            380..430
                     /gene="Ppan"
                     /inference="alignment:Splign:2.1.0"
     exon            431..601
                     /gene="Ppan"
                     /inference="alignment:Splign:2.1.0"
     exon            602..678
                     /gene="Ppan"
                     /inference="alignment:Splign:2.1.0"
     exon            679..786
                     /gene="Ppan"
                     /inference="alignment:Splign:2.1.0"
     exon            787..910
                     /gene="Ppan"
                     /inference="alignment:Splign:2.1.0"
     exon            911..989
                     /gene="Ppan"
                     /inference="alignment:Splign:2.1.0"
     exon            990..1119
                     /gene="Ppan"
                     /inference="alignment:Splign:2.1.0"
     exon            1120..1286
                     /gene="Ppan"
                     /inference="alignment:Splign:2.1.0"
     exon            1287..1635
                     /gene="Ppan"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctccgtgct ctctgagtct cttgcacgga agtgaacggt gtgcgccgga agcgactaca
       61 ggggctgcct cgtggagaag caggcagcat ggggcagtcg gggcggtccc gacatcagaa
      121 gcgcgctcgc gcccaggcgc agctccgcaa cctcgaggcc tacgccgcac agccgcactc
      181 tttcgtgttc acgcgaggcc gagcgggtcg cagcgtccag cagctcagcc tggatgtgcg
      241 gcgggtcttg gaacctctca ccgccacacg gctgcaggtt cgaaagaaga actcactgaa
      301 ggactgtgtg gcagtggccg gtcccctggg ggtcacacac tttcttgttt tgagcaaaac
      361 agacagcagt gtatacttga agctgatgcg actcccagga ggccccactc tgacctttca
      421 gataaacaag tacacactga tacgggatgt tgtctcttcc ctgcgccggc accggatgca
      481 cgagcagcag tttaaccacc cgcccctcct gattctgaac agctttggca ccccgggcat
      541 gcacgtcaaa ctcatggcca ccatgttcca gaacctgttc ccatccatca acgtgcacac
      601 ggtgaaccta aacaccatca agcgttgcct cctcattaac tacaatcccg actcccagga
      661 gctggacttc cggcactaca gcatcaaagt ggtccccgtg ggtgcaagcc gtggcatgaa
      721 gaagctctta caggaaaagt ttcctaacat gagccgattg caggacatca gtgagctgct
      781 ggcctcgggt gtggggctgt cagaaagtga ggtggaacca gacggagaac acaataccac
      841 agaactgccc caggcggtgg ctggccgagg gaacatgcag gcccagcaga gtgctgtccg
      901 actcacagag attgggcccc ggatgacact gcagctcatt aagatccagg agggcgttgg
      961 gaacggcaat gtcctcttcc acaattttgt gcacaagacc gaggaggagc tgcaggccat
     1021 cctggcagcg aaggaggaga agctacggct caaggcacag cgtcagaacc aacaggcaga
     1081 gaacttgaag cgcaagcagg aactgcgtga ggctcacaag aagaagagcc tggcaggcat
     1141 aaagcgagca cgtgcaaagg ccgatggcga cagtgacgct gaggacccag gggcacctcc
     1201 agaagcagtg gggatgagcc agctggagga ggaagaggat gatgcagagt atttccgcca
     1261 ggccgtgggc gaggagcctg atgaagactt gttccccaca gtggccaagc ggagacggca
     1321 ggggggccct gtgggcaaga agcggcctgg gaaggagcag aggcctggta ataaaggccg
     1381 tggtcagagt ggcaactggc aggctctgaa gccacatggc agatcccaga gagtcaagac
     1441 caagctggga cccagagcca ggtcccgtga cttgggtcca ccatcaagga aaggaccctg
     1501 aacctgcctg tcagtgggtg gaccatgtgt ggatgcccca gattggggcc cggaagctgc
     1561 cctgggcccc agtgcactcc ggtttccttt cataaaggaa ctgcccagtt acctccaata
     1621 aacctgaaca tgacaaaaaa aaaaaaaaaa aaaaaaaaa
//
