LOCUS       XM_039098610            1420 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus inorganic pyrophosphatase 1 (Ppa1),
            transcript variant X1, mRNA.
ACCESSION   XM_039098610
VERSION     XM_039098610.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098610.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1420
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1420
                     /gene="Ppa1"
                     /gene_synonym="Pp; Pyp"
                     /note="inorganic pyrophosphatase 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 23
                     ESTs, 6 long SRA reads, 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 90 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:294504"
                     /db_xref="RGD:1589773"
     CDS             170..1105
                     /gene="Ppa1"
                     /gene_synonym="Pp; Pyp"
                     /codon_start=1
                     /product="inorganic pyrophosphatase isoform X1"
                     /protein_id="XP_038954538.1"
                     /db_xref="GeneID:294504"
                     /db_xref="RGD:1589773"
                     /translation="MSSFSSEERAAPFTLEYRVFIKNEKGQYISPFHDVPIYADKMTN
                     AFSTLKDQQQVWQSQESLADVFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLRY
                     VANLFPYKGYIWNYGAIPQTWEDPGHSDEHTGCCGDNDPIDVCEIGSKVCARGEIIRV
                     KVLGILAMIDEGETDWKVIAINVDDPDAANYHDISDVERLKPGYLEATVDWFRRYKVP
                     DGKPENEFAFNAEFKNKEFAVDIIKNTHDYWKALVTKKTDGKGISCMNTTVSESPFKC
                     DPDAAKAIVDALPPPCESACALPMDVDKWFHHQKN"
ORIGIN      
        1 ggtgcaaggc gagccccatg cgttaaaggc aaggcgccgg cgaccagcgg gccagctcgt
       61 ggtgcgcagg cgcgagcttc ctccacggta caaccgctcc gaggctgggc tgtgtggttg
      121 tgtagctgtg cagcggcggc gacggcggca caggcacatc tcggacacca tgagcagctt
      181 cagcagcgag gagcgcgcag cgcccttcac cctggagtac cgcgtcttca tcaaaaatga
      241 gaaagggcag tatatttctc catttcatga tgttccaatt tacgcagaca agatgacaaa
      301 tgcctttagt actctgaagg accagcagca ggtgtggcag tcacaggaat cactggctga
      361 tgtgttccac atggtggttg aggttccacg ctggtcaaat gcaaaaatgg agattgctac
      421 aaaggaccct ttaaacccga ttaagcaaga cgtgaagaag ggaaagctcc gctatgtggc
      481 caatctgttc ccttacaaag gctacatctg gaactatggc gccatccccc agacttggga
      541 agacccagga cacagtgacg agcacactgg ctgctgtggt gacaacgacc caattgacgt
      601 ttgtgaaatt ggaagcaagg tatgtgccag aggtgagata atcagggtga aggtcctggg
      661 catactggcc atgatcgacg agggtgagac cgactggaag gtcattgcca ttaatgtgga
      721 cgatccagac gcagccaatt accatgatat ttctgatgtg gaacggctga aacccggcta
      781 cttagaagct accgttgact ggtttagaag gtataaggtt cctgatggga aaccagaaaa
      841 tgagtttgca ttcaacgcag aatttaaaaa taaggagttt gcagttgaca ttattaaaaa
      901 cacccacgat tattggaagg cattagtgac taagaagaca gatgggaaag ggatcagttg
      961 catgaacacc acagtgtctg agagcccctt caagtgtgat cctgatgcag ccaaagccat
     1021 tgtggatgct ttaccaccac catgtgagtc tgcctgcgca ctaccaatgg acgtggataa
     1081 atggttccat catcagaaaa actgatgcga ttccttggga gtgcaggctg atacggctgt
     1141 atcctgttca tctggaagca ttagacacag aagtgtagta acttctccat gctctgaatt
     1201 tctatgctca cctaatgggg tagattccgc tgtgactggt ccaatatgtt cagaaggtta
     1261 gccatctaga cacctcacat cccaaccaag acaactttta ctaaatgtta gctctcaaag
     1321 ctgaggggac atggaagtca tttgtggata gatgtgtaag gtgggcacct attggatgta
     1381 tatgtttatc atgttaggaa ataaagttat tttactgaaa
//
