LOCUS       NM_001101002            6320 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus POU class 6 homeobox 2 (Pou6f2), mRNA.
ACCESSION   NM_001101002 XM_001055787 XM_001055843 XM_039096067
VERSION     NM_001101002.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6320)
  AUTHORS   Yoshida,S., Ueharu,H., Higuchi,M., Horiguchi,K., Nishimura,N.,
            Shibuya,S., Mitsuishi,H., Kato,T. and Kato,Y.
  TITLE     Molecular cloning of rat and porcine retina-derived POU domain
            factor 1 (POU6F2) from a pituitary cDNA library
  JOURNAL   J Reprod Dev 60 (4), 288-294 (2014)
   PUBMED   24804940
  REMARK    GeneRIF: expressed in the stem/progenitor cells of the rat
            pituitary primordium as well as the diencephalon and retina
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On or before Apr 8, 2021 this sequence version replaced
            XM_039096067.1, NM_001101002.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.72163.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-263               JAXUCZ010000017.1  51167772-51168034
            264-435             JAXUCZ010000017.1  51170067-51170238
            436-527             JAXUCZ010000017.1  51294361-51294452
            528-756             JAXUCZ010000017.1  51297562-51297790
            757-1133            JAXUCZ010000017.1  51436197-51436573
            1134-1274           JAXUCZ010000017.1  51525678-51525818
            1275-1481           JAXUCZ010000017.1  51548905-51549111
            1482-1650           JAXUCZ010000017.1  51565106-51565274
            1651-1819           JAXUCZ010000017.1  51574477-51574645
            1820-6320           JAXUCZ010000017.1  51577855-51582355
FEATURES             Location/Qualifiers
     source          1..6320
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q11"
     gene            1..6320
                     /gene="Pou6f2"
                     /note="POU class 6 homeobox 2"
                     /db_xref="GeneID:681092"
     exon            1..263
                     /gene="Pou6f2"
                     /inference="alignment:Splign:2.1.0"
     exon            264..435
                     /gene="Pou6f2"
                     /inference="alignment:Splign:2.1.0"
     CDS             270..2324
                     /gene="Pou6f2"
                     /note="retina-derived POU-domain factor 1"
                     /codon_start=1
                     /product="POU domain, class 6, transcription factor 2"
                     /protein_id="NP_001094472.2"
                     /db_xref="GeneID:681092"
                     /translation="MIAGQVSKPLLSVRSEMNAELRGEDKAATSDSELNEPLLAPVES
                     NDSEDTPSKLFGARGNTVLPEPGTPDQHQASQTHPSFPVGPQPLLTAQQLASAVAGVM
                     PGGPPALNQPILIPFNMAGQLGGQQGLVLTLPTANLTNIQGLVAAAAAGGIMTLPLQN
                     LQATSSLNSQLQQLQQLQLQQQQQQQQPPPPPTSQHPQPASQAPAQSQQPQSQPTPPH
                     QPPPASQQLPAAPAQLPQATQPQQHQPHSHPQNQNQSSPTQQSSSPPQKPTPSPGGHS
                     LPSPLTPPNPLQLVNNPLASQAAAAAAAMGSIASSQAFGNALSSLQGVTGQLVTNAQG
                     QIIGTIPLMPNPGPSSQAASGTQGLQVQPITPQLLTNAQGQIIATVIGNQILPVINTQ
                     GITLSPIKPGQQLHQSSQTSVGQAGTQGNLLHLAHGQASTSQSPVRQASSSSSSSSSS
                     SALSVGQLVSNPQTAAGEVDGVNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGP
                     AYSQSAICRHTILRSHFFLPQEAQENTIASSLTAKLNPGLLYPARFEKLDITPKSAQK
                     IKPVLERWMAEAEARHRAGMQNLTEFIGSEPSKKRKRRTSFTPQALEILNAHFEKNTH
                     PSGQEMTEIAEKLNYDREVVRVWFCNKRQALKNTIKRLKQHEPTSAVPLEPLADSPEE
                     NC"
     exon            436..527
                     /gene="Pou6f2"
                     /inference="alignment:Splign:2.1.0"
     exon            528..756
                     /gene="Pou6f2"
                     /inference="alignment:Splign:2.1.0"
     exon            757..1133
                     /gene="Pou6f2"
                     /inference="alignment:Splign:2.1.0"
     exon            1134..1274
                     /gene="Pou6f2"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..1481
                     /gene="Pou6f2"
                     /inference="alignment:Splign:2.1.0"
     exon            1482..1650
                     /gene="Pou6f2"
                     /inference="alignment:Splign:2.1.0"
     exon            1651..1819
                     /gene="Pou6f2"
                     /inference="alignment:Splign:2.1.0"
     exon            1820..6320
                     /gene="Pou6f2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaaaacaac aaacacacag ggagaaattc tggggaaatt tgagaattgc ccacctcctt
       61 tgtcttttgt cagtctctct cttcacctcc caatgccaag tgctccaaaa tccagccaac
      121 aaacccagtg cctgggatac taatctatca ccgtaaattt agattgacaa tactatgggt
      181 cgaccgcatt gattacattg attctatttc aaatatttac aatacactga gacaagccta
      241 atctattttc taaagagttc aaggatccaa tgatagctgg acaagtcagt aagcccttgc
      301 tgtcagtgcg gagtgaaatg aatgcggagt tgagaggtga ggacaaggct gctacttcag
      361 acagcgagct gaatgagccc ctgcttgcgc ccgtggaatc aaatgacagc gaggacactc
      421 ccagcaagct cttcggggcc agaggaaaca cagtcctacc agaaccagga actcctgacc
      481 agcaccaggc cagtcagacc catccctcct ttccagttgg accacagcct cttctaacgg
      541 cacagcagtt agcctctgct gtggccgggg tgatgccggg aggcccccca gccctcaatc
      601 agcctatcct catccccttc aacatggcgg gacaactagg tggtcagcaa ggcctggtcc
      661 tcacactgcc caccgcgaat ctcacaaaca tccaagggct ggtagcggca gctgcagctg
      721 gaggcattat gactctgcca ttgcaaaatt tacaagctac ctcatccctg aactcccagc
      781 tgcaacagct ccagcaactc cagctccagc agcaacagca gcagcaacaa ccacctcctc
      841 caccaaccag ccagcaccca cagccagcct cacaggcgcc cgcacagtct cagcagccgc
      901 agtcccagcc caccccgcct caccagccac cacctgcttc acagcagttg ccagctgccc
      961 cagctcagct gccgcaggct actcagcctc aacagcatca acctcattcc catccccaga
     1021 accagaacca gtcgtctcca acccagcaga gctcaagccc ccctcagaaa cccaccccat
     1081 ctccaggagg acatagcctt ccgtcaccac tcacaccgcc taaccctcta cagctggtta
     1141 ataatcctct agcaagtcag gccgccgctg cagcagcagc catgggctcc atagcaagct
     1201 cacaggcctt tggcaatgcc ctctccagcc ttcagggggt cacaggtcaa ctagttacta
     1261 atgcacaagg acagattatt gggaccattc cactgatgcc taacccaggg ccatcgagtc
     1321 aagcagcaag tggcactcag ggccttcaag tacagcctat cacaccccag ctcctaacca
     1381 atgcccaggg ccaaatcatt gccacggtca tcggaaacca gatcttgcct gtgatcaata
     1441 cccagggtat taccctgtcc cccatcaagc caggccagca gcttcaccaa tcttcccaga
     1501 catcagttgg tcaagcaggc acccaaggca acctcctgca cctggctcat ggccaagcat
     1561 ccacctctca aagtccggtg cgacaggctt cctcctcctc ctcttcatcc tcctcttctt
     1621 cagctttgag cgtgggccag ttagtcagca atcctcaaac ggcagcgggt gaggtggacg
     1681 gggttaatct ggaggagatc cgagaatttg ccaaagcttt taaaatccga cgcctgtccc
     1741 ttggcctgac acagactcag gtgggacaag ccctcagtgc cacagagggc cctgcataca
     1801 gccagtcggc catctgcaga cacaccatcc tgagaagcca ctttttccta ccacaggaag
     1861 cccaagagaa cactatagct agcagtctga cagccaaact gaaccctggc cttttgtatc
     1921 ctgccaggtt tgaaaagctg gacatcaccc ctaaaagtgc ccagaagatt aagccggtgc
     1981 ttgagcggtg gatggctgag gctgaggccc gccatcgagc aggtatgcag aatctcacgg
     2041 agtttattgg gagtgagcca tccaaaaagc gcaagcggcg cacctccttc acaccccagg
     2101 cccttgagat cctcaatgcc cactttgaga agaacacaca cccctcaggg caggaaatga
     2161 ccgagattgc tgagaagcta aactatgacc gggaagtagt tagagtttgg ttctgcaata
     2221 agagacaagc tctgaagaac acaatcaaac gtttaaagca gcacgagccc acctctgcgg
     2281 tccccctgga acccttagcg gactctccgg aagaaaactg ttagacacac cgttcatgat
     2341 cagaaggaag catctcagaa actgagcatt accccaagtc tccacaaaaa agaaagaaaa
     2401 aagaagaaaa aagaatttaa agacaccccc agtcatcatc tctcttgtat gtaaaagact
     2461 aaaaacaaaa actaccaagt gggcagaatg gtttatacat gtctgttggt tttccaaaag
     2521 gaaaaaaaaa ggagagagaa attttaaatt tttaaacaag aaaaaatacc acatgaagga
     2581 gtatgtggta ggatcattcg ctccccccac ctgtctccct aaagccagtt ttttaaaagc
     2641 aaaccaaata accacttact tttttctgta cgtgatgaaa atgtgaacac cttttaagga
     2701 aaaaggaaaa aaaactaaac caaaaaaaaa aaaaaaaaaa gaacaaaagc aaaaaaaccg
     2761 ccaacacaaa cttgtatctg ttcaaagcga atgcaagcct gccacctgga ggagtgactg
     2821 caacccttca gggactaagt gctgatcact gcaaacccta tttaccaaag tcggaaacac
     2881 tgcaaatgct actgctcgtc tactcgcctc tgcgtgaaga gttatgttat gagtttttac
     2941 atgtgtacca acaggaaagt ggaagcccgc tttctcccat ctttcttgcc tgatgtctgt
     3001 gccaccacgg cggatgctat tgttgggagc attctctagg gctcactgtc tacaatttgc
     3061 ttcttagcag atgaagtagc ttcctctttt ctttctttct ttttttgtta ttgtttttgt
     3121 tttctgaatt gtgtcatttc cttttttgtt ttatttttgg cgggtggtgg ggtggagaaa
     3181 caacctggat tgtgtgccaa agccttcgtg gctttctttc actatgagtt gtaggtttga
     3241 gagagaaaat ggagttcaca cttccctttc ttccctattg ctccatttcc ctttcctgtg
     3301 gttccgggga atcttctgga agatggcaga agtgggaaga atggtttctt tcccactcca
     3361 atcctgcaga aacgcaggag acaatccagg ataactaagt ctgtctgctg aatgactgtc
     3421 aacactggca gaggctgtaa ctgctcacgg ttcacaccag agattgggat ttttctcggt
     3481 ctactagcca catatgtgga gagctgatac aaattaattc tgtaatataa acatacgctg
     3541 cacatatggt tcaatactta aacctgtgtt atgcttctgt tcaaagcaaa ttctctaaga
     3601 agtctatagc caaagaaaag tctcaagatt tcagtcagta cacacgcaca caagcacgtc
     3661 catgctcatt cgcctcacac acagagagag accacaaaag atgatggtga cctagattgt
     3721 taggggctgt tgagtgtcct gttaacctcg tcttttctgc tacttgtttc atcaaacagt
     3781 gttggcagac atttggagct ggggtacatc tgttcttggg atatatacat ggcataaaaa
     3841 ggtgacaggc aaattgaagc aagtggaact aggctctggc ttcttgacaa agaagtttag
     3901 caacaaaggc tctccaataa aggaaaaata gacaagtagc ttataaaaca cctcagaaga
     3961 gccttcccca ttagcatatt aattcacttt caaaagagct tccccaaggc atgagccacg
     4021 agatccaaga aggccacaga atgaaaggca aagaaaccct tggagcctgt taatgttttc
     4081 accctggtga gggcagagag ttctatcaaa gcaggtaaga accatcaacg tagatactca
     4141 tgagtagtta aaaagcatgc tcgtgtactg tctagaggca aatcatgaaa gggaaaaaga
     4201 aaccccacct ccagttgccc agttggttac aaagaccatc ttgtatcccc tagcaagctc
     4261 tcccaagcag gggttctagt ttttttttct gttggctcct ttgctggtaa caaaaatggg
     4321 acagtaaaat agtccctcag atgcaatcat aaatcagcaa tcataaaact cccaccaagg
     4381 aaactaaata ataattctgg acatagagtc attaataaca gtgtctccat gccactagtc
     4441 tgattctaat tggaccacaa ccagcccgat tagtgccaac aacatcatgg tagcatttca
     4501 caactgcaaa gactgaagaa ataccagcaa cccagaaacc gaaactttat tgattaaaac
     4561 agattttgta ttctcctagg acctgctaca aattccatca agaaaaactc cccaagaaga
     4621 gacgctaaca agataacata ggacggatgc taaatgttta aaatctgaac cggaagcagg
     4681 cacatgaggc ctgctcagtt ctgaggtcta tgattgggag agcatagcta gaatagtaaa
     4741 aatataaaat aaaactaatc acccagagta gaacaaaaaa gaagtgaatt catcccatgg
     4801 ttgtaaaact attcacatgc agtgattttt ttatagtttt ataattttgt attgttttat
     4861 aaattattta tatagtgttg taatgcttct tatattgatt ttttactgat gaattttttg
     4921 ctacaaggca aaaaaaaaag atgcctgaac agattcttag gaatataaac tatacttggg
     4981 aacacataag ccttcaggac cacacctact gcttaatttt attagatatt tcttatttcc
     5041 tctggtaaag aacttcatat gccaataaca tctaagtgtc ttttatgttt ccatgaactg
     5101 aaggttaagg ttgctaccaa caaaaagtaa aagccacttt gggcaaatgt gattgtattt
     5161 caagcttctg tgtctttctc acacatttta aaaattgttg tcatctccat tttcttcatc
     5221 attgatgaga catgacagcc gatattgtat tttacacttg cttgtggagg ttgttttctc
     5281 tttcaaccaa aaagatattt tgagtagtta aaagtttcac ttgcctttgc aagttttgaa
     5341 ctctttctgt cgtgaacaca cagtcacaca cacacacaca cacacacaca cacacacaca
     5401 cacacaccac aaaagagaac aaaaaaaaaa aaaaacaaag gaaaaccaag agctgggaga
     5461 ggcagaacaa acaagtagag gcatatcaaa gaactcaagc tgtaaccaaa aagaaatcca
     5521 attgcctttg ctctcttctc tacgctggac caaagctcag tacgtgtagg aatatgcaca
     5581 ttgtgtagat atggctaaat gttgctgaca atcttgcaat actaaactgt tcctatttta
     5641 agaaaaacaa atcacaaact gctcatcaat gttttacctc agcactctac ttgtacccag
     5701 ttaacgatca agcataaaaa caacggagaa aaaggaaatt gattttcatt tccatgtctg
     5761 actgtaaaat cagtttggat aatattttgt aatgagcttt tttgtcatgt gacttgcttg
     5821 tcttcaactt gcaattctgt gaggcacatt ggcttatttg ttgttgaaaa gtgttttttt
     5881 tttaaatacc ttgaagtttt gatttattat ttcatcctct gtgctgtgat ctagactggt
     5941 caccagggtc acttaatgaa gcgctgcaaa ggaatctgct tctccatgcc tggggcaggc
     6001 agcaggagag agagcaggaa actagactgg gttgttctgg aaaaaaaaat catgccgaca
     6061 agacattgac atgatagact cgtgaccaag aagccaaact ggatattgaa aagctcctta
     6121 cttgttctaa cattgaaacc aaagctgact tatctgcaca ggttgctaaa tgtttaaaaa
     6181 ataaaataaa ataaaaactg tccttaatct agagcaatat ctgtatggtc cgtaaagctg
     6241 cactttgtgt atttctgaac agcttcagat ctgtcacttt taatttgtac catgaaaaat
     6301 aaagacttgt ttgacatgaa
//
