LOCUS       NM_001105745            2407 bp    mRNA    linear   ROD 27-JUL-2024
DEFINITION  Rattus norvegicus POU class 2 homeobox 3 (Pou2f3), mRNA.
ACCESSION   NM_001105745 XM_001059708 XM_343378
VERSION     NM_001105745.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2407)
  AUTHORS   Glahder,J.A., Hansen,C.N., Vinther,J., Madsen,B.S. and Norrild,B.
  TITLE     A promoter within the E6 ORF of human papillomavirus type 16
            contributes to the expression of the E7 oncoprotein from a
            monocistronic mRNA
  JOURNAL   J Gen Virol 84 (Pt 12), 3429-3441 (2003)
   PUBMED   14645924
REFERENCE   2  (bases 1 to 2407)
  AUTHORS   Cabral,A., Fischer,D.F., Vermeij,W.P. and Backendorf,C.
  TITLE     Distinct functional interactions of human Skn-1 isoforms with Ese-1
            during keratinocyte terminal differentiation
  JOURNAL   J Biol Chem 278 (20), 17792-17799 (2003)
   PUBMED   12624109
REFERENCE   3  (bases 1 to 2407)
  AUTHORS   Andersen,B., Weinberg,W.C., Rennekampff,O., McEvilly,R.J.,
            Bermingham,J.R. Jr., Hooshmand,F., Vasilyev,V., Hansbrough,J.F.,
            Pittelkow,M.R., Yuspa,S.H. and Rosenfeld,M.G.
  TITLE     Functions of the POU domain genes Skn-1a/i and Tst-1/Oct-6/SCIP in
            epidermal differentiation
  JOURNAL   Genes Dev 11 (14), 1873-1884 (1997)
   PUBMED   9242494
REFERENCE   4  (bases 1 to 2407)
  AUTHORS   Yukawa,K., Yasui,T., Yamamoto,A., Shiku,H., Kishimoto,T. and
            Kikutani,H.
  TITLE     Epoc-1: a POU-domain gene expressed in murine epidermal basal cells
            and thymic stromal cells
  JOURNAL   Gene 133 (2), 163-169 (1993)
   PUBMED   8224904
REFERENCE   5  (bases 1 to 2407)
  AUTHORS   Andersen,B., Schonemann,M.D., Flynn,S.E., Pearse,R.V. 2nd, Singh,H.
            and Rosenfeld,M.G.
  TITLE     Skn-1a and Skn-1i: two functionally distinct Oct-2-related factors
            expressed in epidermis
  JOURNAL   Science 260 (5104), 78-82 (1993)
   PUBMED   7682011
  REMARK    Erratum:[Science. 1993 Dec 3;262(5139):1499.. PMID: 8248794]
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473975.1.
            
            On or before Oct 3, 2007 this sequence version replaced
            XM_343378.3, XM_001059708.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: L23862.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5756307,
                                           SAMEA5760383 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2407
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q22"
     gene            1..2407
                     /gene="Pou2f3"
                     /note="POU class 2 homeobox 3"
                     /db_xref="GeneID:116544"
                     /db_xref="RGD:621691"
     exon            1..103
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..1368
                     /gene="Pou2f3"
                     /note="Rov 1 pou-homeodomain protein; oct-11;
                     transcription factor Skn-1; octamer-binding transcription
                     factor 11; OTF-11; octamer-binding protein 11"
                     /codon_start=1
                     /product="POU domain, class 2, transcription factor 3"
                     /protein_id="NP_001099215.1"
                     /db_xref="GeneID:116544"
                     /db_xref="RGD:621691"
                     /translation="MVNLEPMHTEIKMSGDVADSTDARSTFGQVESGNDRNGLDFNRQ
                     IKTEDLGDTLQQSLSHRPCHLSQGPTMMPGNQMSGDMASLHPLQQLVLVPGHLQSVSQ
                     FLLSQTPPGQQGLQPNLLSFPQQQSTLLLPQTGPGLTSQAVGRPGLSGSSLEPHLEAS
                     QHLPGPKHLPGPGGNDEPTDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFS
                     QTTISRFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSASTPSSYPTLSEVFGRKRK
                     KRTSIETNIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKRINC
                     PVATPVKPPIYNSRLVSPSGSLGSLSVPPVHSTMPGTVTSSCSPGNNSRPSSPGSGLH
                     ASSPTASQNNSKAAMNPSSAAFNSSGSWYRWNHPAYLH"
     exon            104..172
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
     exon            173..207
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
     exon            208..312
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
     exon            313..415
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
     exon            416..498
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
     exon            499..681
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
     exon            682..823
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
     exon            824..960
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1122
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
     exon            1123..1189
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
     exon            1190..1328
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
     exon            1329..2407
                     /gene="Pou2f3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttccccgg gggccaggct ggggcagcag cgagggacct gggggggcgc tggctttggc
       61 cccgcctggg gcaggatggt gaatctggag cccatgcaca cagagatcaa gatgagtggg
      121 gatgtcgctg attccacaga tgcccgcagc acttttggtc aagtggagtc aggaaatgat
      181 cgaaatggcc tagatttcaa cagacagatt aagacagagg atctgggtga cactttgcag
      241 cagagcctct cccacaggcc atgccacctg agccaagggc ctaccatgat gcctggaaac
      301 caaatgtctg gggacatggc ttctctccat ccacttcagc agcttgtgct ggtccctggc
      361 cacttacagt ctgtatccca gtttctgctt tcccagaccc ctcctgggca gcaaggtctg
      421 cagccgaatc ttctctcctt tccacagcaa cagagcactc tactcctccc acagacagga
      481 cctggcctca cctcccaggc agttggacgc cctgggctgt caggatcctc tttagagccc
      541 cacctggaag cttctcaaca tctgccaggg cccaagcatc tgcctggccc cggagggaat
      601 gacgaaccca ctgacctgga ggagctggag aagttcgcca agaccttcaa gcagaggcgc
      661 ataaagctag gcttcacaca gggggatgtg ggattggcga tgggaaagct gtatggtaac
      721 gacttcagcc agactaccat ctcgagattt gaggccctca acctgagttt caagaacatg
      781 tgtaaactca agccactgct ggagaagtgg ctgaatgatg cagagtcctc cccgtcagac
      841 ccttcagcaa gcactcccag ctcgtacccc actctcagcg aagtatttgg caggaagagg
      901 aagaaacgga ccagcatcga gaccaacatc cgcctgactt tggagaagcg atttcaagat
      961 aaccctaaac ccagctcgga agagatttcc atgattgcgg agcagttgtc catggagaag
     1021 gaagtggtaa gagtctggtt ctgcaatcga cgccaaaagg agaagagaat caactgccct
     1081 gtggccacac ctgtcaagcc gcccatctac aactcccggc tggtctctcc ctcagggtct
     1141 ctgggctccc tctcagtccc tcctgtccac agcaccatgc ctggaacagt aacgtcatcc
     1201 tgttcccctg ggaacaacag caggccctcg tctcccggct caggactcca tgccagcagc
     1261 cccacggcat ctcaaaataa ctccaaagca gcaatgaacc cctcctccgc cgcctttaac
     1321 tcctcagggt catggtaccg ttggaaccat cccgcctacc tccactgaga ccaaaaactt
     1381 cctcccgttc cacctggccc ctggttccca ccaggaggaa gagcggccac accttccacg
     1441 tatggacaga cactttgaga ctcggagcgg gagaaatggc cgctgctgaa gagcaaaccc
     1501 acaatcttgc cttctcctgg atccagagct tccagagaac caagctgtga ccaaaggcca
     1561 cactcttgcc ttgggctctt gatcaccccg ctgggagttt accgtgctca cccgtgaccc
     1621 gcttcatgct cacatgatgg cttcacctat tggagaaagg gcattctgcc attgttagtt
     1681 ttcagctcac cggtgggatt ctgggacagc cttttgctcg ttgtgccaaa ctgcaagaag
     1741 ggtagattat ggttttgact ctgacctcag ccacaatcct gaactgatcc aaattctatg
     1801 agaagactga aatctcgtgt ctctaccaaa gccttatttt gttaaattag cacagttttc
     1861 ttacagcatc tccatttttg cccaactttc ttttagccct tactcccttt tctacaacaa
     1921 aacctgtcta tccttaggtc ctacaaagtc ccttcctctc tacaaatggc taagctcccc
     1981 tctggccatg ttgctccatt cacgtgtact cttttgttgc ccacatgttc ccaagttcaa
     2041 gaacacttgt tttttttctg ttctctgtgg gttttcttgt cctgtcccct ctccttgctc
     2101 ctggccacag agaagtacac acactgtggc cactttcttg tacatagtcc tttcctactc
     2161 tgcactatga ccgttcatct ttaatgtgta atttcccagc gaaatgttta actcaggtgt
     2221 gcattttgaa gatgtctcta tattatttta tcttctgtta gaaaaggaag ggggatacca
     2281 gagtgtggaa caccccacag agttcccacg tgagctgggg ttctgcagac tttgtggagg
     2341 aacatcgtat gtggagtctc cttctgtggg tctgtgtgta aaactgtcac atgaaagcca
     2401 tcccaga
//
