LOCUS       NM_001399310            1170 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus POU class 2 homeobox associating factor 3
            (Pou2af3), mRNA.
ACCESSION   NM_001399310 XM_006243057
VERSION     NM_001399310.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1170)
  AUTHORS   Peltekova,V.D., Lemire,M., Qazi,A.M., Zaidi,S.H., Trinh,Q.M.,
            Bielecki,R., Rogers,M., Hodgson,L., Wang,M., D'Souza,D.J.,
            Zandi,S., Chong,T., Kwan,J.Y., Kozak,K., De Borja,R., Timms,L.,
            Rangrej,J., Volar,M., Chan-Seng-Yue,M., Beck,T., Ash,C., Lee,S.,
            Wang,J., Boutros,P.C., Stein,L.D., Dick,J.E., Gryfe,R.,
            McPherson,J.D., Zanke,B.W., Pollett,A., Gallinger,S. and
            Hudson,T.J.
  TITLE     Identification of genes expressed by immune cells of the colon that
            are regulated by colorectal cancer-associated variants
  JOURNAL   Int J Cancer 134 (10), 2330-2341 (2014)
   PUBMED   24154973
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Jan 6, 2022 this sequence version replaced XM_006243057.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.1775241.1,
                                           SRR26643293.45181.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760434 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-142               JAXUCZ010000008.1  60492371-60492512   c
            143-237             JAXUCZ010000008.1  60491675-60491769   c
            238-292             JAXUCZ010000008.1  60488216-60488270   c
            293-516             JAXUCZ010000008.1  60486684-60486907   c
            517-1170            JAXUCZ010000008.1  60484596-60485249   c
FEATURES             Location/Qualifiers
     source          1..1170
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q23"
     gene            1..1170
                     /gene="Pou2af3"
                     /gene_synonym="Colca2; RGD1563866"
                     /note="POU class 2 homeobox associating factor 3"
                     /db_xref="GeneID:315652"
                     /db_xref="RGD:1563866"
     exon            1..142
                     /gene="Pou2af3"
                     /gene_synonym="Colca2; RGD1563866"
                     /inference="alignment:Splign:2.1.0"
     exon            143..237
                     /gene="Pou2af3"
                     /gene_synonym="Colca2; RGD1563866"
                     /inference="alignment:Splign:2.1.0"
     CDS             178..891
                     /gene="Pou2af3"
                     /gene_synonym="Colca2; RGD1563866"
                     /note="colorectal cancer-associated protein 2; colorectal
                     cancer associated 2"
                     /codon_start=1
                     /product="POU class 2 homeobox associating factor 3"
                     /protein_id="NP_001386239.1"
                     /db_xref="GeneID:315652"
                     /db_xref="RGD:1563866"
                     /translation="MTVKELLQQRRAHQAASGATLTGSSSIHLPDTTMPSPAGLYFEP
                     EPTSSTPSYFQAREFSTCVSCEENPSCLDQIFESYLQTDTPPEPLLNSAQIAPHYFPE
                     SCPVASFCHNLMPGSPSDSSSLSGSYDCSYSPAQLPAYTPENYTFPPSLDSLYSSLPE
                     EGYFCQHWPSHPQYNHSSPTTPSSVCYYASCEAEHLDALRTTELFSYPGMDCMDFAPS
                     AATTGDFYKRETSCDACYS"
     exon            238..292
                     /gene="Pou2af3"
                     /gene_synonym="Colca2; RGD1563866"
                     /inference="alignment:Splign:2.1.0"
     exon            293..516
                     /gene="Pou2af3"
                     /gene_synonym="Colca2; RGD1563866"
                     /inference="alignment:Splign:2.1.0"
     exon            517..1170
                     /gene="Pou2af3"
                     /gene_synonym="Colca2; RGD1563866"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggggtgggaa gagacgaagg aagcaacaga gtcggagagt ggagggagaa agagagtgag
       61 gaagtaaaga catttttgaa aaagggaaag aaccgacagg agaacattcc ccaaacttga
      121 ccccttttct ggggtcagtg caaaaaacct aaagtgtatc aaggcgtccg tgtgaagatg
      181 accgtgaaag agcttctgca gcaaagaagg gcacaccagg ccgcctcagg ggcaaccttg
      241 acaggcagca gcagtatcca ccttccagac accaccatgc catcgcctgc aggactgtac
      301 tttgagcctg aaccaacgtc ttccacaccc agttattttc aggcccgaga gttttccacc
      361 tgtgtctctt gtgaagaaaa ccctagctgc ctggaccaga tcttcgagtc ctaccttcag
      421 actgacacac ccccggagcc cttgctcaac tctgcacaaa tcgctcccca ctatttccca
      481 gagagctgtc cagtggcctc tttctgccat aacctgatgc caggctcgcc ttcggattcc
      541 tccagtctct ctggctccta tgactgcagc tactcaccag ctcagctgcc tgcttatact
      601 ccagaaaatt acacgtttcc accttctctg gattccctat actccagcct cccagaagaa
      661 ggctacttct gccagcattg gccttctcac ccccagtaca accactcctc ccctaccacc
      721 ccctcctcgg tctgctacta cgcatcctgt gaagcagaac atttggatgc cctcaggacc
      781 acagagctct tctcctaccc cggcatggac tgtatggact ttgccccttc agcggccacc
      841 actggcgatt tctataagag ggaaacaagc tgcgatgcct gctatagtta gtaggaacca
      901 cactggaatg tgtcatgggg gtttctgttt ctagatgaca gttcaacgca ttcacaaact
      961 accccacata tggtttacat ttcaccattt tcaatcaccc tgtagctagt gtgggaattg
     1021 acacaatgcc ctcaagcctg gtctcatgac agtcttattt tatatactca ctgttaaatt
     1081 tttttgtatg gattgttttt ttcccagtgc cttccttctt agtataaaga acaaactttt
     1141 ttgtaaacga ataaataact ttgtataata
//
