LOCUS       NM_001109599            2527 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus POU class 2 homeobox associating factor 1
            (Pou2af1), mRNA.
ACCESSION   NM_001109599 XM_001074701
VERSION     NM_001109599.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2527)
  AUTHORS   Shore P, Dietrich W and Corcoran LM.
  TITLE     Oct-2 regulates CD36 gene expression via a consensus octamer, which
            excludes the co-activator OBF-1
  JOURNAL   Nucleic Acids Res 30 (8), 1767-1773 (2002)
   PUBMED   11937630
REFERENCE   2  (bases 1 to 2527)
  AUTHORS   Lee L, Stollar E, Chang J, Grossmann JG, O'Brien R, Ladbury J,
            Carpenter B, Roberts S and Luisi B.
  TITLE     Expression of the Oct-1 transcription factor and characterization
            of its interactions with the Bob1 coactivator
  JOURNAL   Biochemistry 40 (22), 6580-6588 (2001)
   PUBMED   11380252
  REMARK    Erratum:[Biochemistry 2001 Jul 27;40(28):8430]
REFERENCE   3  (bases 1 to 2527)
  AUTHORS   Chasman D, Cepek K, Sharp PA and Pabo CO.
  TITLE     Crystal structure of an OCA-B peptide bound to an Oct-1 POU
            domain/octamer DNA complex: specific recognition of a protein-DNA
            interface
  JOURNAL   Genes Dev 13 (20), 2650-2657 (1999)
   PUBMED   10541551
REFERENCE   4  (bases 1 to 2527)
  AUTHORS   Chang JF, Phillips K, Lundback T, Gstaiger M, Ladbury JE and Luisi
            B.
  TITLE     Oct-1 POU and octamer DNA co-operate to recognise the Bob-1
            transcription co-activator via induced folding
  JOURNAL   J Mol Biol 288 (5), 941-952 (1999)
   PUBMED   10329190
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473975.1.
            
            On Oct 4, 2007 this sequence version replaced XM_001074701.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5756307,
                              SAMEA5760494 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2527
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q23"
     gene            1..2527
                     /gene="Pou2af1"
                     /note="POU class 2 homeobox associating factor 1"
                     /db_xref="GeneID:690528"
                     /db_xref="RGD:1594728"
     exon            1..112
                     /gene="Pou2af1"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..867
                     /gene="Pou2af1"
                     /note="POU domain, class 2, associating factor 1; POU
                     class 2 associating factor 1"
                     /codon_start=1
                     /product="POU domain class 2-associating factor 1"
                     /protein_id="NP_001103069.1"
                     /db_xref="GeneID:690528"
                     /db_xref="RGD:1594728"
                     /translation="MLWQKSTASEQAPAPPRPYQGVRVKEPVKELLRRKRGHTSVGTA
                     GPPAAVVLPHQPLATYSTVGPSCLDMEVSAPTVTEEGTLCAGWLSQPAPATLQPLAPW
                     TPYTEYVSHEAVSCPYSADMYVQPVCPSYTVVGPSSVLTYASPPLITNVTPRSTATPA
                     VGPQLEGPEHQAPLTYFPWPQPLSTLPTSSLQYQPPAPTLSGPQFVQLPISIPEPVLQ
                     DMDDPRRAISSLTIDKLLLEEEESNAYELNHTLSVEGF"
     exon            113..243
                     /gene="Pou2af1"
                     /inference="alignment:Splign:2.1.0"
     exon            244..286
                     /gene="Pou2af1"
                     /inference="alignment:Splign:2.1.0"
     exon            287..552
                     /gene="Pou2af1"
                     /inference="alignment:Splign:2.1.0"
     exon            553..2527
                     /gene="Pou2af1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 taaacggtgg ttccacagga ggaaagcacg cccagtcaca ttaaagaagc caaactgtct
       61 gcttcaaaga gaaaaggcaa catcctgtca caagccatgc tctggcaaaa atccacagct
      121 tcagagcaag ctcctgcccc tccacggcca taccagggcg ttcgagtcaa ggagccggtg
      181 aaggagctac tgagaagaaa gcgtggccat accagtgttg ggacagctgg tccaccagct
      241 gcggtggtac tgccccacca gcccctggca acctacagca cagtgggtcc ttcctgcctt
      301 gacatggagg tttctgctcc cacagtgaca gaggagggga cattatgtgc tggctggctc
      361 tcccaacctg ccccggccac tcttcaaccc ttggctccat ggacgcccta cacggagtat
      421 gtgtcccatg aagctgtcag ctgcccttac tccgctgaca tgtatgtgca gcctgtgtgc
      481 cccagctata cagtggtggg accctcctcg gtattgacct atgcctcccc accactcatc
      541 actaacgtca cgccaagaag cacggctaca cccgcagtgg ggccgcagct ggagggccca
      601 gagcaccagg cgccccttac ctatttcccg tggcctcagc ccctttccac actgcccacc
      661 tccagtctgc agtatcaacc tccagcccca accctgtctg ggccccagtt tgtccagctc
      721 cccatttcta tcccagagcc agtccttcag gacatggatg accccagaag ggccatcagc
      781 tctctgacca ttgacaagct tcttctggag gaagaggaga gcaacgctta cgagctcaac
      841 cacaccctct ccgtggaggg cttctagggt tggcttgcat ctaatagccc tttcacccaa
      901 aactgagatt taaaaggagc ccagatggag cccagaagta gctattccat aggctccctt
      961 tcttcctaaa gctaaattgt attccttctt ttctcccttc ttccttctct ccacttcctt
     1021 ccaccaagtc ccatttcact tctttcttat ttctcctttc agttttcttc ctctggagca
     1081 gcaaactata gtgatattat gaacaatact ttatactgaa tgtcaccaag tcgtgcagct
     1141 cagggttttc ctttcgagtc acatcactag ggaagcgtcc ttctctcagg tgccctctgc
     1201 ttcctggtgg cagtagcttt agaaatctac tctatgacca tttgcccttt ctgccattct
     1261 gaaatgcatt tcagttttgt tttgtgtgcc atgctcagcc ttggccagat gtgctatata
     1321 agtagatgtt tctggtgtgg ctagagggga tgggacagga ccatcagggt aggtagtggc
     1381 agtcagtgaa tgatggacga cagggatgag gaggagcagg acacggacct gtgtctgtgg
     1441 ttagagaggg agttggggtg ggggaaggct gaggagtgac ctaacaatca gctttgaaaa
     1501 aaatatcact ttaatgcaat ttaggggttc gtgatggtga ttatgagctg gctagggatc
     1561 aatgatgagt caggccctct aatgtgatgc cagcacttca aatacttttt gtcagcatat
     1621 tgtcatagca acaggaaaag gaacaggtga agcctatcag tgaggaggct ctcacttagt
     1681 ccttccacgt gggcttttgc ttcctgttgt gactcaccca gggccatctt gatacactgc
     1741 catggcgtct tccgcccact cactgtctgt ctctggggtc ctggagtcct ggttggcagg
     1801 cctaccagcc ttaattttca cttttcttta gtttttggtg gagaagcata acattttctg
     1861 ttgagtgatt gctgtcttgg ggtgctctgc tcctgaggtg gatgtgtgtg tctttgggaa
     1921 ctggcccacg attactaatg atgtatgtca ccattacata cacacaagct tagtctatag
     1981 aatccatgta gaataacaga cgttctagaa aatgacagtt tctttgatat cccaccccct
     2041 ttgcttccat ttttaatgaa aacttagagt tacctgtctt ttttctttct tctgctttgt
     2101 gtttatttta attcagacat ttcaccatct acctaaaatc ctgcgtatct tgaatttcct
     2161 gttattcctc tttaatactt ggattgaatg ttacatctgg atggtgggtt tacacttcta
     2221 ttggtggtta ctatgaacaa gaaagggagc aggaagcctc ggcttatttc attaagaccc
     2281 tgttgcactt aaaaacacta tttaagattt tccagctact ttgggagttt gagataatgc
     2341 aggggtggca atcacagagg agataatgct gggaaaacaa accaaaacag caaagaaagt
     2401 agtgtgagtg tttgctagga ttgaattggt accttgaaac ctcaagtctt ggctgcaggt
     2461 gtccatccag atttcctcct gagtttttct actcctatgc aacattttca ataaagattt
     2521 gtcgatg
//
