LOCUS       XM_039095039            6204 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus POTE ankyrin domain family member M
            (Potem), mRNA.
ACCESSION   XM_039095039
VERSION     XM_039095039.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6204
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6204
                     /gene="Potem"
                     /note="POTE ankyrin domain family member M; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 3 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:306365"
                     /db_xref="RGD:1563748"
     CDS             446..5860
                     /gene="Potem"
                     /codon_start=1
                     /product="chromatin structure-remodeling complex protein
                     SYD-like"
                     /protein_id="XP_038950967.1"
                     /db_xref="GeneID:306365"
                     /db_xref="RGD:1563748"
                     /translation="MDYSGNTAFHHAISRGSIAIVKMLLEYNVDIEAKTEYGLTPLQL
                     ATYENQTEMINFLESMSADAQAVQVSNSARRPAHKKEVKHVRFLEEVLFFKDERPLSC
                     GVRPPGQLKSILKNSNRHNSEAGKRLTGTSPWCVNVDNVSSTSSVKGESGRKFHIIPK
                     KIQNIFRKSGVYVCSRGEPVPDVWKAKKSIMDEKYKTDNFYAVSSEHRNSIPKATVDR
                     EASTSTADSLDAAEPDPTNSTNATDCLAALERELTNSNNTADCLADLEPDPTFSTNAA
                     DLQAAVAPEPTMSTHPADCLPDVEPEPTMSTHPADTLAALEPELTNSNNTADCLADLE
                     PEPNMSTHPADSLPDVEPEPTMSTHPADTLAALEPELTNFNNTADCLADLEPDLTIST
                     NAADFQAAVAPEPTMSTHPADCLPDMEPEPTISTHPADTLAALEPELTNSNNTADCLA
                     DLEPDPTISTNAADCRAAVAPEPAMSTNPADSMAAVEPEPTMSTHPADILTADEPEHN
                     TSTKAADCLADLEPEPNLSTHPADSLPDVEPEPTMSTHPADTLAALEPELNNSNNTAD
                     CLADHEPDPTISTNAADFQAAVAPEPTMSTHPADCLPDVEPEPTMSTHHADTLAALEP
                     ELTNFNNTADCLADLEPDPTISTNAADFQAAVAPEPTMSTHPADCLPDVEPEPTMSTH
                     PADTLAALEPELTNSNNTADCLADLEPDPTISTNAADCRAAVAPEPAMSTNPADSMAA
                     VEPEPTMSTHPADILTADEPEHNTSTKAADCLADLEPEPNMSTHPADSLPDVEPEPTM
                     SNHPADTLAALEPESTKSSNAADCLAYVEPEPAMSTHRADSLAALEHELSHANKDADC
                     LASLKAELINSTNATDCLASVGTETTMSTQPTDNLAAVEPEHNSTNTADGLDSVEQEP
                     AKPTYRADSLAALEHELTNSNNTADCLASQKAESIDSTNATDCLASVGTETTMSTHPA
                     DNMATDELEPTHSTNAAYFLAALEPQSTNSSNAADILASVGSETTMSTHLADIPIAHE
                     PDYNDSTNAADSLDSVEPEPAMSTHRADSLAALEHELSHANKAADCLASLKPEPTMST
                     QPADSSAAVEPEPTISTRAADCLATVLPELIRSIHPADCLDSVQPESSMSTHPADNMA
                     TDELEPKNSTNAVYCLAALEPESTKSSNAADCLAYVEPEPEPGMSTHRADSLASLEHE
                     LTNSNNTADCLASQKAESIDSTNATDCLASVGTETTMSTHPADNMATDELEPTHSTNA
                     AYCLAALEPESTKSSSAADCLAYVEPEPAMSTHRADSLAALEHELSHANKDAGCLASL
                     KAELINSTNATDCLASVGTETTMSTQPADSLAAVEPEHNNSTNAADGLDSIEQEPAMP
                     THRSDSLAALEHELSHANKAADCLASLKAEPTMSTQPADTLASVEPEPTFSTKAADCL
                     ATVQPELTRSNHPADCLDSVQPESSMSPHPADSLVAIEPELTNSTKAADFLGAVDPES
                     TKSTHPADSMAVDEPELPNSNIAADCLDDLEPDTTISTNAADCQAAVGSETTMSTQPA
                     DSLAAVEPEPTNSTKAADCLDSAEPEPTMATHHADILTAVEPEHTNCSSTADCLPAVQ
                     PESSMSTHPADSMAAIDAEPTDPAIVADCLAALEPRLSVTCAADSSVLVESHDSGPAS
                     HIGLDYVVDLPLYKESTSEEEIFDSATSDEESSFTPDVEEGLPATQGAEDIFHASARA
                     EPINHSLNLLRESGYLRATEIPRIPFLLFIWLISSLLSIITWMKIQIQQAWHEENGQG
                     APTNKRVGPENNFHNVTNPV"
ORIGIN      
        1 tttgtcttcg gcttcggcgt cggctttgtc ttcggcttcg gcctcggcct cggcctctgc
       61 ctcggctttg gcttcagctt cggcttcggc ttcggctttg gcttcggcgt tggcttcttg
      121 gtcagcttcg gcttcggtgg tttcagcatc gacttcgttg gcttcggcgg cttcagccgc
      181 atcgacagct tcggtgtcga tttcttcggc tgtggcttgg cctgctgcat cagccatttc
      241 tgggaagagg tgctctgctc tcaggacatc gctgcattat gcgagtgccc acaaccatcc
      301 agatgtagtg acactgttat tagaaaataa gtccaacatt aacatccagg atgatgaagg
      361 ctgcacaccg ttgattaagg ctgcgcagcg ggacaacaca cattgtgttt gtgtattgct
      421 caggcacaat gctaatccaa atttgatgga ttacagtggg aatacagcct ttcaccatgc
      481 catttccagg ggcagcatag caattgtaaa gatgctcctg gagtacaacg tagatattga
      541 agccaaaaca gagtatggct tgacaccact gcaacttgca acatatgaaa atcagactga
      601 aatgataaac ttcttagaat caatgagtgc agatgcacag gccgtgcaag tgtcaaacag
      661 tgcaagaaga ccagcacata aaaaagaagt gaagcatgta agatttttgg aagaagtctt
      721 gttttttaaa gatgaaaggc ctttgtcctg tggagtaaga ccaccaggac agctaaaatc
      781 cattttgaaa aactctaacc ggcataattc agaagctggt aagagactta caggaacatc
      841 accatggtgt gtgaatgtgg ataatgtcag ctctacctcc tctgtgaagg gagaatcggg
      901 aagaaaattc catataatac ctaagaagat ccagaacatt tttagaaaat ctggagttta
      961 tgtgtgttct cgaggagagc cagtacctga tgtatggaaa gcaaaaaaat ccataatgga
     1021 tgaaaaatat aaaacagata atttctatgc tgtgtcttct gagcatagaa attctattcc
     1081 taaggctact gttgatcgtg aagcttccac ctctactgct gacagcctgg atgctgccga
     1141 gcctgacccg acaaattcta caaatgctac tgactgtctg gctgctcttg agcgtgagct
     1201 gactaattcc aacaacactg ctgactgtct ggctgacctt gagcctgatc cgactttttc
     1261 taccaatgcc gctgacttgc aggctgctgt tgcaccagag ccaactatgt ccacccaccc
     1321 tgctgactgt ctgcctgatg tggaaccaga gccaactatg tccacccacc ctgctgacac
     1381 tctggctgct cttgagcctg aactgactaa ttccaacaac actgctgact gtctggctga
     1441 ccttgagcct gagccaaaca tgtccaccca ccctgctgac agtcttcctg atgtggaacc
     1501 agagccaact atgtccaccc accctgctga cactctggct gctcttgagc ctgagctgac
     1561 caatttcaac aacactgctg actgtctggc tgaccttgag cctgatctga ctatttctac
     1621 caatgccgct gactttcagg ctgctgttgc accagagcca actatgtcca cccaccctgc
     1681 tgactgtctg cctgatatgg aaccagagcc aactatttcc acccaccctg ctgacactct
     1741 ggctgctctt gagcctgaac tgactaattc caacaacact gctgactgtc tggctgacct
     1801 tgagcctgat ccgactattt ctaccaatgc cgctgactgt cgggctgctg ttgcaccaga
     1861 gcccgctatg tccaccaacc ctgctgacag tatggcagct gttgagcctg agccgactat
     1921 gtccacccac cctgctgaca ttctgactgc tgacgagcct gaacataata cttctaccaa
     1981 agctgctgac tgtctggctg accttgagcc tgagccaaac ttgtctaccc accctgctga
     2041 cagtctgcct gatgtggaac cagagccaac tatgtccacc caccctgctg acactctggc
     2101 tgcacttgag cctgaactga ataattccaa caacactgct gactgtctgg ctgaccatga
     2161 gcctgatccg actatttcta ccaatgccgc tgactttcag gctgctgttg caccagagcc
     2221 aactatgtcc acccaccctg ctgactgtct gcctgatgtg gaaccagagc caactatgtc
     2281 cacccaccat gctgacactc tggctgctct tgagcctgag ctgactaatt tcaacaacac
     2341 tgctgactgt ctggctgacc ttgagcctga tccgactatt tctaccaatg ccgctgactt
     2401 tcaggctgct gttgcaccag agccaactat gtccacccac cctgctgact gtctgcctga
     2461 tgtggaacca gagccaacta tgtccaccca ccctgctgac actctggctg ctcttgagcc
     2521 tgaactgact aattccaaca acactgctga ctgtctggct gaccttgagc ctgatccgac
     2581 tatttctacc aatgccgctg actgtcgggc tgctgttgca ccagagcccg ctatgtccac
     2641 caaccctgct gacagtatgg cagctgttga gcctgagccg actatgtcca cccaccctgc
     2701 tgacattctg actgctgacg agcctgaaca taatacttct accaaagctg ctgactgtct
     2761 ggctgacctt gagcctgagc caaacatgtc cacccaccct gctgacagtc tgcctgatgt
     2821 ggaaccagag ccaactatgt ccaatcaccc tgctgacaca ctggctgctc ttgagcctga
     2881 gtcgactaaa tcctccaatg ctgctgactg tctggcctat gttgagccag agccagctat
     2941 gtccacccac cgtgccgaca gtctggctgc tcttgagcat gagctgtctc atgccaacaa
     3001 agatgctgac tgtctggctt ctctcaaggc tgagctgatt aattccacca atgctactga
     3061 ttgtctggct tctgttggga ctgagacaac catgtccacc cagcctactg acaatttggc
     3121 agctgttgag cctgaacata attccaccaa tactgctgac ggtctggact ctgttgaaca
     3181 agagccagct aagcccacct accgtgccga cagtctggct gctcttgagc atgagctgac
     3241 taattccaac aacactgctg actgtctggc ttctcagaag gctgagtcaa ttgattctac
     3301 caatgctact gattgtttgg cttctgttgg gactgagaca actatgtcca cccaccctgc
     3361 tgacaatatg gctactgatg agcttgagcc tacacattcc accaatgctg cttactttct
     3421 ggccgctctt gagccccagt cgactaattc ctccaatgct gctgatattc tggcttctgt
     3481 tgggtctgag acaaccatgt ctacccacct tgctgatatt cctattgctc atgagcctga
     3541 ctataatgat tctaccaatg ctgctgacag tctggactcc gttgagccag agccagctat
     3601 gtccacccac cgtgccgaca gtctggctgc tcttgagcat gagctgtctc atgccaacaa
     3661 agctgctgac tgtctggctt ctctcaagcc tgagccaacc atgtccaccc agcctgctga
     3721 cagttcggca gctgttgagc ctgagcctac aatttccacc agagctgctg attgtctggc
     3781 tactgttctg ccggagctaa ttaggtcaat ccaccctgct gactgtctgg actctgttca
     3841 gcctgagtca tctatgtcca cacacccagc tgataatatg gctactgatg agcttgagcc
     3901 taaaaattcg accaacgctg tttactgtct ggctgctctt gagcctgagt cgactaaatc
     3961 ctccaatgct gctgactgtc tggcctatgt tgagccagag ccagagccag gcatgtccac
     4021 ccaccgtgcc gacagtctgg cttctcttga gcatgagctg actaattcca acaacactgc
     4081 tgactgtctg gcttctcaga aggcagagtc aattgattct accaatgcta ctgattgttt
     4141 ggcttctgtt gggactgaga caactatgtc cacccaccct gctgacaata tggctactga
     4201 tgagcttgag cctacacatt ccaccaatgc tgcttactgt ctggctgctc ttgagcctga
     4261 gtcgactaaa tcctccagtg ctgctgactg cctggcctat gttgagccag agccagctat
     4321 gtccacccac cgtgccgaca gtctggctgc tcttgagcat gagctgtctc atgccaacaa
     4381 agatgctggc tgtctggctt ctctcaaggc tgagctgatt aattccacca atgctactga
     4441 ttgtctggct tctgttggga ctgagacaac catgtccacc cagcctgctg acagtttggc
     4501 agctgttgag cctgaacata ataattccac caatgctgct gacggtctgg actctattga
     4561 acaagagcca gctatgccca cccaccgttc tgacagtctg gctgctcttg agcatgagct
     4621 gtctcatgcc aataaagctg ctgactgtct ggcttctctc aaggctgagc caaccatgtc
     4681 cacccagcct gctgacactt tggcatctgt tgagcctgag cctacttttt ccaccaaagc
     4741 tgctgattgt ctggctactg ttcagcctga gctaactagg tcaaaccacc ctgctgactg
     4801 tctggattct gttcagcctg agtcatctat gtccccacac cctgctgaca gtttggtagc
     4861 tattgagcct gaactgacta attccaccaa agctgctgac tttctgggtg ctgttgatcc
     4921 cgagtcaacc aaatccaccc accctgctga cagtatggca gttgatgagc ctgagctgcc
     4981 taattccaac attgctgctg actgtctgga cgaccttgag cctgatacga ctatttctac
     5041 caatgccgct gactgtcagg ctgctgttgg gtctgagaca accatgtcca cccagcctgc
     5101 tgacagtttg gcagctgttg agcctgagcc gactaattcc accaaagctg ctgactgtct
     5161 ggactctgct gagccagagc caactatggc cacccaccat gctgacattc tgactgctgt
     5221 tgagcctgaa catactaatt gctccagtac tgctgactgt ctgcctgctg ttcagcctga
     5281 gtccagtatg tccacccacc ctgctgacag tatggctgct attgatgctg agcctacaga
     5341 tcctgccatt gttgctgact gtctggctgc tcttgaacct cggctgtctg ttacatgtgc
     5401 tgctgacagt agtgtgttag ttgagagtca tgactcagga ccagctagtc acattggatt
     5461 ggattatgtt gttgatttac ctctttacaa ggagagtaca agtgaagaag aaatatttga
     5521 ttctgctact tcagatgagg aatcttcttt tacccctgac gtagaagaag gtctgcctgc
     5581 tactcagggt gctgaggata tttttcatgc ttccgcacga gctgaaccaa taaaccacag
     5641 cttgaacctt ctcagggaga gtggatatct tcgggcaaca gagataccac gcataccttt
     5701 tttgctcttc atatggctta tatcctcact tttatccatc ataacatgga tgaaaatcca
     5761 aattcaacaa gcatggcatg aagaaaatgg ccaaggagct cccactaaca agagagtcgg
     5821 accagaaaat aattttcata atgtaacaaa tccagtttag agaaatacaa ctgaccaggt
     5881 aatatttttt cctacttgga tgtttcctat tctagaatga ggagattatt gtcacttcca
     5941 gtgaaaacat gtgtttcctg aatgactaag ccgggaaaac ttcctgttaa atgttattgt
     6001 ctatttatcg ctgtcattct gaactctgac ttctgaagtt agcatagcct ttgaccgcaa
     6061 cattccaaaa gaagcaactt ctgagattaa aaataacaag agaagcatcc accttctcac
     6121 tgtttctctc tacattgatc cagatgataa tgacactgat gttgttgatg ctgggcatga
     6181 caatatcacc agtgatgtgc ctga
//
