LOCUS       XM_039084417            5587 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protection of telomeres 1B (Pot1b),
            transcript variant X3, mRNA.
ACCESSION   XM_039084417
VERSION     XM_039084417.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039084417.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5587
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5587
                     /gene="Pot1b"
                     /note="protection of telomeres 1B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:690237"
                     /db_xref="RGD:1582873"
     CDS             3472..5439
                     /gene="Pot1b"
                     /codon_start=1
                     /product="protection of telomeres protein 1-like isoform
                     X1"
                     /protein_id="XP_038940345.1"
                     /db_xref="GeneID:690237"
                     /db_xref="RGD:1582873"
                     /translation="MSLAPVPPYTYTPLNLLKDGTVVSVCGVVKFFKPPYLSKGTDYC
                     SVVTIVDQTHVKLTCMLFSRNCETLPIIYKVGDIVCFRGLKIQAYKNELQGISTRGFA
                     SLTFDGTLGAPVVSRTLSKSFNFTAQDYNMVETLRTWASTHISASSNLVQLSNAEPMQ
                     YYDLTCQLLGKAEVDGVSFLLKVWDGTRTKIPSWRLCLQDMAFEGDLSHILRLQNLVI
                     DVVVYDNHVQVAKSLKIGSFLRIYSLHTKLQPVNSESPTSLVRLEFHLHGGTSYGRGI
                     RVLPESNYDVNQLKKSLESVDLEAIQTSDDTYQSDNENCSSPESDSVSLYEMERCQQL
                     CATKLTDYHCLEKTSLCAILKQSAPRQYRIIAKLRSYMPRRLLQSVKLLCPKCHLLQE
                     VPYDENVDKILQDASGKAPDYKLHGTPLYDSEVWTTKGQEGRQVAVHFVKNDGILPHS
                     SECLVLIEGGRLCEIYKLSSMFHSVIPVKSGPEDLELLDLAAPFLIRGKVCHYGDLKF
                     LAYRSFTCLVKVTPRCNQCSNLKSIQNLSTIPNKRLWLPSSVAEALGIVPLQYVFVMT
                     FTFDDGTGVLDVYLKDSDKFFQIPASEVLTDDDLQRNLERIMNVICPPGIKIDAYPWL
                     ECLIKSYNVTSGTEHQICYQIFDTMVAEDIL"
ORIGIN      
        1 gtaagtgtgt atgcgtgtgc gtgtgcgcgt gcccgtgttt gtatctctgt ggtccggagg
       61 gtggcctcag aggcttctgg taggagtgag tgcgtgtgcc ggtgtttgtg tctctgttgt
      121 acggaggcgg ggctcagggg cttctggtac gtatgagtgc gcatgcgtgt ccgcgcgcgc
      181 ccgtgtttgt gtctctgttg tccggaggcg gggctcaggg ccttctggta ttcgcccagg
      241 tgaaagatca ctggtttggg aacccgttaa agtatcaagg ttagtaagtt agcctgacaa
      301 gtttcaggga aaaaagccta aacccggtgc acaattaaca gagatccacc ggcttttgcc
      361 tttgcggcag agtgctagga ttaaaggcat gagccagaat gctctgctac agatctgaag
      421 actagctttt agaagcactt tgatacaaaa acttcagaaa agaaacgttt gagctccttg
      481 gaagtgtact ttgggtttgg aattgccata aagctataaa atcatatact ctaaaacctc
      541 caccccaaca ctgaaactaa agaacaaccc cccccccaaa aaaaaagact taaaacaaat
      601 tatgggctat attttggaca aaacgttgat tttgtgtgtg tgtgtgtgtg tgtgtgtgtg
      661 tgtgtcctca gcagcaagta tcagcttgaa tttttatgcc tcttgaatta ataaaggaag
      721 tcaaatggat accagaagtt cagccactga ataaattaca gaaattagat ttcagatctc
      781 tacagccagg atgtgattat agtaagatgc atgtccagtt aagtttgtta actcaaatgt
      841 gttttcctct taaaaactat gcacatattt tatgtttagt atctttgtga gagctcttag
      901 gataggattt ttttttcatt acaactgaga ctgaatattt caatattatt catgtttttt
      961 ccagcttttg cctaggaagt atttattgtt ttgtaatgca ttggaataag tttctgaagt
     1021 ataaagttga attgatctag ccaccatact caaggtgatc tctaattttc attaataata
     1081 aacagtagca ttttggtatg tgaacataag tgaatttttg tttctgatat tcttagatta
     1141 tgagagatga actaggactt tcagggcaac tattttactt gcctttcttt gggatgagag
     1201 cagttactga ggaatttggg tattacagta acaatgtggg aatctcatgc cagacatcag
     1261 cagaagaaag acatgacttc ctttgagttt agactattct ttcccctgcc caaagaatat
     1321 atgacagata tgatatagat agggtatagc aagtacactg gaagaaaacc aggtaggcag
     1381 tgacagtaac acaggtaaga attgataact gattggcact agtggcagaa gggatgatag
     1441 gggtagactg ataggaaaaa atagaaatct aatgttaata acaacaagga acatttattg
     1501 agtgctttat gttgggtggc attttaggtg ttgtgtgcgt taactcattt aattattaaa
     1561 aaaattatga catcgatgct ttatgtttac ctatgtattt gaaaacattg cattttcctg
     1621 agatagctag ttagtggtag aggtgacaat taaatctaga gtttgtttta ggcttgagac
     1681 aaaatcaaga gttagaaggc cttgcagagt aattacatta caggggcaat gagtacagga
     1741 agcttaactg taatttctag acacgctggc aagaaaagag gagataacat atgctgtgag
     1801 ttcaagttgg gacatgtagg tgagatcttt ggtgtgggat catcttgacc tgaactgcct
     1861 gtaggcttgg cccttgctcc tgtgtccctt tctaagtagg ggtaagaaga tgggttttgc
     1921 tttgtttatt tctgttcttc ttttccagcc acactgggtt ttcatcaaat tcacaggctt
     1981 gtttcacttt tcctcacatt gtgaggcctt tgttgtgagt cagaggtaga ggagaaagat
     2041 cctcacaggg tacctgcctt tgctccaaac aatggctgct gctgtcctct cctagtctta
     2101 atgtttcaga tctgtgaaga agaatgtgac ctgctcttgg tcctaatcaa taaaaacctt
     2161 ccttaaattt catattagtt gcagacactt ttggaattag atgacaaaac tcttttctca
     2221 ctgaagaatc cctttcctta gctctgttag tttactgccc tggatctcct ctggtggatc
     2281 aaagaaaaaa ttgaaacttc gtagattgtc tagctgtttg ccatctgatg tcttagctca
     2341 tgtccaggat ctgcctgcca ccatacctgg cttatggtga ctcttttagg aataaatttg
     2401 tcatgttttc tatttgatca gtaaacttaa cagcctttct gttgactatt ttaaagtttg
     2461 agatgtgata tagaagagta ttaattagga tctactttta atctgttttt taaataaata
     2521 aaacataccc atatggttgt ttataaggag tccatggttt gtgtgagaca gaaagtttta
     2581 aaatgagagt caaaagaaaa gttgacagac ggtacaaaga ctaaattgta cttttttgtt
     2641 gtatatcgac tggaactcat tgtcctagtt tatgagtttt tcatttcaca tttagaattt
     2701 ttctttttaa attggaattt gtttctcaaa gcaatcttta ttttattttg ctgagagatt
     2761 tattagagga tgaaaaagaa gcttgggaaa ttaatgaact tcactttatt ctgtatctta
     2821 aataaggctt gaatcaagtt atgaattcta catattttct tcctcagatt tttctcagat
     2881 gacttaatat ttattagaac atggtatatt gagttcctaa aagtatggtc taagtgagat
     2941 tcagagaaag gttctctaaa gatcaataaa aggaatagaa taactatgta taactgaaca
     3001 catcccatag tatagtatga gtatattaag gagtagactg tggcagtata ggtttttaaa
     3061 ggcaaatgag catgcttgct gaagataccc ataatagata ttagtagcaa gtgtatcatt
     3121 agtacaggct tacatattca gaggttgtgt gtgtgtgtgt atatgtgtgt gtgtgtgtgt
     3181 gtgtgtgttt gtgtatgtat gcaatagact tcatttagga gtgaggagta aagctgtagc
     3241 agagaccttt aggacaataa ttctcaggta gtcagtcata tgtgagaacc tgaacctcta
     3301 agtggcttta tgtgttttat tagggctgat gctactccag taatattcca aaaaaaattc
     3361 tcaaaaggga aaattctcag ttacttaata tttggaagta aagcagctgt tttgaagatt
     3421 agaccttatt aagagtttga ataattctgt aaagggattt tcgacagaat aatgtctttg
     3481 gccccagtac caccttacac atacacaccc ctaaatctac ttaaggatgg cactgttgtc
     3541 agtgtctgtg gtgttgtgaa gttctttaag cctccgtact taagcaaagg aacggattat
     3601 tgttctgttg taacaattgt ggaccagaca catgtgaagt taacgtgcat gctctttagt
     3661 agaaactgcg aaacccttcc catcatttat aaagttggag acattgtttg cttccgtggg
     3721 ctgaagatcc aggcatataa aaatgagctt cagggaatca gcacacgtgg ttttgcatct
     3781 ttaacatttg atggcacctt aggggctcct gtcgtatctc gtactttaag caagagcttt
     3841 aacttcactg ctcaggacta caatatggta gaaaccttgc ggacttgggc atccacacac
     3901 atttcagctt cttccaactt agtgcagctt tctaatgctg aacccatgca gtattatgac
     3961 ctgacttgtc agctcctggg caaagcagaa gtggacggag tgtcatttct cctaaaggta
     4021 tgggatggca ctaggacgaa gattccctct tggagattat gcctacaaga catggctttt
     4081 gaaggtgact taagtcacat tctacggcta cagaatctgg tgatagacgt tgtcgtttat
     4141 gataatcatg tccaagtggc taaatcccta aagataggaa gcttccttag aatctacagc
     4201 ctccatacca agcttcagcc agttaattca gagtccccaa cttccttggt aagactcgag
     4261 tttcatcttc atggaggaac cagctatggt cgtgggatca gggtcttacc agaaagtaac
     4321 tatgatgtga atcagctgaa aaaatcttta gaatctgtag atttggaagc tattcagacc
     4381 tcagatgata cctatcaatc agacaatgag aactgttcaa gccctgaatc agactcagtt
     4441 tccctgtatg agatggaaag atgccagcaa ctctgtgcta caaaacttac agattaccat
     4501 tgtttagaga agacatcgtt gtgtgccatt ttgaagcaaa gtgctcctcg acaatatcga
     4561 atcatagcaa agctaagatc atacatgccc agaagacttt tacagtctgt gaaactcctt
     4621 tgtcctaaat gtcatttatt gcaagaagtt ccatatgatg aaaatgtgga taaaattttg
     4681 caagatgcat caggtaaagc cccagactac aagctgcatg gtacaccatt atatgactca
     4741 gaagtctgga ccacaaaagg ccaagaggga cggcaggttg ctgttcattt tgtaaagaat
     4801 gatggaatcc ttcctcactc aagtgaatgt ctagttttga tagaaggagg acggctctgt
     4861 gaaatctata aactgtcaag catgtttcac agtgtgattc ctgtgaagtc tggccctgag
     4921 gacctggagc tcctagacct tgcagcacca ttcctcatac gaggaaaggt gtgtcattat
     4981 ggagacttga agttcttggc atacagatct ttcacttgct tggttaaagt cacaccaaga
     5041 tgtaatcagt gctcaaactt gaaatccata caaaacctaa gtactattcc taataaaaga
     5101 ctatggcttc catcctctgt agcagaagct ctgggcattg tacctctaca gtatgtgttt
     5161 gttatgactt tcacatttga tgatggaacc ggagtattag atgtctacct caaggattct
     5221 gacaagtttt tccagatccc agcatcagaa gtactcactg atgatgacct gcagagaaat
     5281 ctggaaagga tcatgaatgt tatttgtcct ccaggaataa aaatagatgc atacccatgg
     5341 ctggagtgcc tcatcaagtc ctacaatgtc acaagtggaa cggaacatca aatatgttac
     5401 cagatatttg acaccatggt tgcagaagac atcctctagt actgctactc catgtagtag
     5461 gtgcatggag gtggggagtg tagtagtctt acaaaaagtt atgactgtga ctctaaaaac
     5521 ccacttctct gttattgaat tactcattcc aattttcact agagcattaa attcttttat
     5581 acagaaa
//
