LOCUS       XM_006232336            3320 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus periostin (Postn), transcript variant
            X2, mRNA.
ACCESSION   XM_006232336
VERSION     XM_006232336.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006232336.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006232336.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3320
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3320
                     /gene="Postn"
                     /gene_synonym="Plf"
                     /note="periostin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 92 ESTs, 22 long
                     SRA reads, 2 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 48 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:361945"
                     /db_xref="RGD:1305285"
     CDS             161..2596
                     /gene="Postn"
                     /gene_synonym="Plf"
                     /codon_start=1
                     /product="periostin isoform X2"
                     /protein_id="XP_006232398.1"
                     /db_xref="GeneID:361945"
                     /db_xref="RGD:1305285"
                     /translation="MVPLLPLSALLLLFLCDVDPANANSYYDKVLAHSRIRGRDQGPN
                     VCALQQILGTKKKYFSSCKNWYQGAICGKKTTVLYECCPGYMRMEGMKGCPAVMPIDH
                     VYGTLGIVGATTTQHYSDVSKLREEIEGKGSYTYFAPSNEAWDNLDSDIRRGLENNVN
                     VELLNALHSHMVNKRMLTKDLKHGMVIPSMYNNLGLFINHYPNGVVTVNCARVIHGNQ
                     IATNGVVHVIDRVLTQIGTSIQDFIEAEDELSSFRAAAITSDLLESLGRDGHFTLFAP
                     TNEAFEKLPRGVLERIMGDKVASEALMKYHILNTLQCSEAITGGAVFETMEGNTIEIG
                     CEGDSISINGIKMVNKKDIVTKNGVIHLIDEVLIPDSAKQVIELAGKQQTTFTDLVAQ
                     LGLASSLKPDGEYTLLAPVNNAFSDDTLSMDQRLLKLILQNHILKVKVGLSDLYNGQI
                     LETIGGKQLRVFVYRTAICIENSCMVRGSKQGRNGAIHIFREIIQPAEKSLHEKLRQD
                     KRFSIFLSLLEAADLKDLLTQPGDWTLFAPTNDAFKGMTNEEREILIGDKNALQNIIL
                     YHLTPGVYIGKGFEPGVTNILKTTQGSKIYVKGVNETLLVNELKSKESDIMTTNGVIH
                     VVDKLLYPADIPVGNDQLLELLNKLIKYIQIKFVRGSTFKEIPMTVYRPAMTKIHIEG
                     EPDFRLIKEGETVTEVIHGEPVIKKYTKIIDGVPVEITEKETREERIITGPEIKYTRI
                     STGGGETEETLQKFLQKEVSKVTKFIEGGDGHLFEDEAIKRLLQGDTPAKKIQANKRV
                     QGSRRRSREGRSQ"
ORIGIN      
        1 agcacagggc tgctggtgct tctgcaaggc agttgcaagt ttcaggttgg cccagcgccc
       61 cctcccacag ccatgctccc tcccacagcc cagagctcta taaattcagc tctctagaac
      121 acaggccaga tctcttcctg gacggagctc agggctgaag atggttcctc tcctgccctt
      181 atctgctctg ctgctgctgt tcctgtgtga cgttgacccc gcaaatgcca acagttacta
      241 tgacaaggtc ctagctcaca gccgcatcag gggtcgggat cagggcccaa atgtctgtgc
      301 cctccagcag attctgggca ccaaaaagaa atacttcagc tcctgtaaga actggtatca
      361 aggtgctatc tgcgggaaga aaaccactgt gctatatgaa tgctgccccg gctatatgag
      421 aatggaaggg atgaaaggct gcccagcagt gatgcccatt gaccatgttt atggcacgct
      481 gggcatcgtg ggagccacga ccactcaaca ctattctgat gtctcgaagc tcagggaaga
      541 gattgaagga aaagggtcct acacatactt cgcgccgagt aacgaagctt gggacaacct
      601 ggattccgac atccgcagag gactagagaa caatgtcaat gttgagttac tgaacgcttt
      661 acacagccac atggttaata agagaatgct aaccaaggac ctgaaacacg gcatggttat
      721 tccttcaatg tacaacaatc tggggctttt tatcaatcat tatcccaatg gggttgtcac
      781 tgtgaactgt gctcgagtaa tccacgggaa ccagattgcc acaaatggtg ttgtccatgt
      841 catcgaccgt gtcctgacac aaattggcac ctccatccaa gacttcattg aagcagaaga
      901 tgagctttca tcattcagag cggctgccat cacttctgac cttttggagt cccttggaag
      961 agacggtcac ttcacactct ttgctcccac caatgaggct ttcgagaaac tcccacgagg
     1021 agtcctagaa aggatcatgg gagacaaagt ggcttctgaa gctctcatga agtaccacat
     1081 cctgaatacc ctccagtgct ctgaggctat cacaggagga gcggtgtttg agaccatgga
     1141 aggaaacact attgaaatag ggtgtgaggg agacagcatc tccattaacg gaatcaagat
     1201 ggtgaacaag aaagacattg tgacgaagaa tggtgtcatc cacctgattg atgaagtcct
     1261 cattcctgat tctgctaaac aagttattga gctggctgga aaacagcaaa ccactttcac
     1321 ggacctggta gcccagttag ggttggcgtc ttctctgaag ccggatggag agtacacgct
     1381 gttagcgcct gtgaacaatg cgttctctga tgacactctg agcatggacc agcgccttct
     1441 taagctaatt ctgcaaaatc acatattgaa agtaaaagtc ggccttagtg atctctacaa
     1501 tggacagatt ctggagacca ttggaggcaa acaactccgt gtcttcgtgt atcggacggc
     1561 tatctgcata gaaaactcat gcatggtgag aggaagcaag caggggagga acggtgccat
     1621 tcacatattc cgagagatca tccaaccggc ggagaagtcc ctgcacgaaa aactgcgcca
     1681 agataagcgc ttcagcatct tcctcagcct cctcgaagct gcagatctga aagatcttct
     1741 gacacagccc ggagattgga ccttgtttgc accaaccaat gatgccttca agggaatgac
     1801 taatgaagaa agggagattc tgattgggga taaaaatgct ctccaaaaca tcattcttta
     1861 ccacctgacc ccaggggttt atattggaaa gggatttgaa cccggagtca ccaacatcct
     1921 gaagaccaca cagggaagca aaatctatgt gaaaggagtc aatgagacgc ttttggtgaa
     1981 tgagttgaag tccaaagaat ctgacatcat gacaacaaac ggcgtcattc acgttgtgga
     2041 caaactcctc tatccagcag acattccggt tggaaatgat cagctcttgg aattactgaa
     2101 caaactgata aaatacatcc aaattaagtt cgttcgtggc agcaccttca aagaaatccc
     2161 catgactgtc tatagacctg caatgacgaa gatccacatt gaaggcgagc ctgacttcag
     2221 gctgattaaa gaaggtgaaa cagtgacaga agtgatccac ggagaaccag tcattaaaaa
     2281 gtacaccaaa atcatagacg gggttcctgt tgaaataact gaaaaagaga cccgggaaga
     2341 acgcatcatc acaggtcctg agataaaata cactaggatt tccacaggag gtggggaaac
     2401 agaagagacc ctgcagaaat tcttgcaaaa agaggtctcc aaggtcacaa agttcattga
     2461 aggtggcgat ggtcacttat ttgaagatga ggcgattaaa agactgcttc agggagacac
     2521 acctgcaaag aagatacaag ccaacaaaag ggttcaaggg tctagaaggc gatcaagaga
     2581 aggccgttct cagtgaaaat tcaaaggcca gacaacagag tttatataat cctaaatcaa
     2641 caatctgatt tttaagggaa attataagag ccccattgac ttcggaatct gaaatggcaa
     2701 caaacagaag ctaattgtca agcaaatctg aacgcagagt taatttgttt ctgaatgaga
     2761 aacataggaa aatgatagtc tcctgtgggg taggaactga aggaaatata ggaccatgca
     2821 gggattttat ctcaatgaga gaagttctga ttatattagg aatccaccaa agaccatcat
     2881 tgtgactgga tccacacagc taagtctttg ctcagtgaac atggtcaaga agaggctgga
     2941 aaaacccaaa gcacacagtt acctttccat gggaggctaa gctatcaaaa gcggtgttca
     3001 gttatacaac aagcaagcca agccaccaaa ttacaaacag tggtgttaca tatttctcgt
     3061 gcaatgtggg tttcctgcta aattttgttg tttttacact tgatttatat cctcgagatg
     3121 attgtcatat gctttttgca gtacaaatgt ttctctcaaa catttcaata aaaacattct
     3181 tcaggtataa agagaattac ttcagacttg gtaattcaga aaactcaagg tttaagttaa
     3241 aagtgagttt agactttgga ataggacttc ataccttttt ttattgttaa caagtactca
     3301 ataaaggaat ctgaataaca
//
