LOCUS       NM_001415671            1825 bp    mRNA    linear   ROD 19-NOV-2024
DEFINITION  Rattus norvegicus popeye domain cAMP effector 3 (Popdc3),
            transcript variant 1, mRNA.
ACCESSION   NM_001415671 XM_006256599
VERSION     NM_001415671.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Froese,A., Breher,S.S., Waldeyer,C., Schindler,R.F., Nikolaev,V.O.,
            Rinne,S., Wischmeyer,E., Schlueter,J., Becher,J., Simrick,S.,
            Vauti,F., Kuhtz,J., Meister,P., Kreissl,S., Torlopp,A.,
            Liebig,S.K., Laakmann,S., Muller,T.D., Neumann,J., Stieber,J.,
            Ludwig,A., Maier,S.K., Decher,N., Arnold,H.H., Kirchhof,P.,
            Fabritz,L. and Brand,T.
  TITLE     Popeye domain containing proteins are essential for stress-mediated
            modulation of cardiac pacemaking in mice
  JOURNAL   J Clin Invest 122 (3), 1119-1130 (2012)
   PUBMED   22354168
REFERENCE   2  (bases 1 to 1825)
  AUTHORS   Parnes,D., Jacoby,V., Sharabi,A., Schlesinger,H., Brand,T. and
            Kessler-Icekson,G.
  TITLE     The Popdc gene family in the rat: molecular cloning,
            characterization and expression analysis in the heart and cultured
            cardiomyocytes
  JOURNAL   Biochim Biophys Acta 1769 (9-10), 586-592 (2007)
   PUBMED   17662479
REFERENCE   3  (bases 1 to 1825)
  AUTHORS   Andree,B., Hillemann,T., Kessler-Icekson,G., Schmitt-John,T.,
            Jockusch,H., Arnold,H.H. and Brand,T.
  TITLE     Isolation and characterization of the novel popeye gene family
            expressed in skeletal muscle and heart
  JOURNAL   Dev Biol 223 (2), 371-382 (2000)
   PUBMED   10882522
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Dec 22, 2022 this sequence version replaced XM_006256599.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.2256325.1,
                                           SRR26360176.849365.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-216               JAXUCZ010000020.1  50354775-50354990
            217-935             JAXUCZ010000020.1  50379255-50379973
            936-1044            JAXUCZ010000020.1  50381111-50381219
            1045-1825           JAXUCZ010000020.1  50382270-50383050
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q13"
     gene            1..1825
                     /gene="Popdc3"
                     /note="popeye domain cAMP effector 3"
                     /db_xref="GeneID:641520"
                     /db_xref="RGD:1590760"
     exon            1..216
                     /gene="Popdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            217..935
                     /gene="Popdc3"
                     /inference="alignment:Splign:2.1.0"
     CDS             451..1326
                     /gene="Popdc3"
                     /note="isoform 1 is encoded by transcript variant 1;
                     popeye domain-containing protein 3; popeye domain
                     containing 3"
                     /codon_start=1
                     /product="popeye domain-containing protein 3 isoform 1"
                     /protein_id="NP_001402600.1"
                     /db_xref="GeneID:641520"
                     /db_xref="RGD:1590760"
                     /translation="MEKNSSLWKSLVTEHPLCTTWKQEAEGAIFHLASILFVVGFMGG
                     SGFFGLLYVFSLLGLGFLCSAVWAWVDVCAADIFSWNFVLFVICFMQFVHIAYQVHSI
                     TFAREFHVLYSSLFKPLGIPLPVFRTIALSSEVVTLEKEHCYAMQGKTSIDRLSVLVS
                     GRIRVTVDGEFLHYISPFQFLDSPEWDSLRPTEEGIFQVTLTADTDCRYVSWRRKKLY
                     LLFAQHRYISRLFSVLIGSDIADKLYALNDRVYIGKKHHYDIRLPNYYQLSSPDLSRS
                     PLTEQFRNSRQHCNK"
     exon            936..1044
                     /gene="Popdc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1045..1825
                     /gene="Popdc3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgagcccgt ccccgccgca gggagcggct ccgatccgct gtgcccgtct cgggcgggcg
       61 cgagaggacg catcccgaat ccccgcgcgt gcaggcgggt agcggggcga gcgtgtttcg
      121 gtccgtgggt ttcgggctac tagagccgcc cgccccccgc gcactcggcc ggaaagttct
      181 ttgtgctcca tcgggatagg cgtgagggcc gggaaggaaa tagcaaaatc tttatggact
      241 tcgtctgggt caggagccca gatgagctta aagaaaccgg ggctgaaccc ttagtttttc
      301 gtctccacgc ccactgaacc cctccatgcc ggctcccaca tctcccggcc tgtggagcga
      361 ttgccccgtt ctgtgatggg aaagcgaagg actccgtcat cgctggcctc agagtcatct
      421 aaagagaact gacagggaag cggtgcagcc atggagaaga attcaagctt gtggaagagc
      481 ctggtgacgg agcacccact ctgcaccacc tggaagcaag aggcggaagg ggccattttc
      541 cacctcgcca gtatcttgtt tgtggtgggc tttatgggcg gcagtggatt ctttgggctc
      601 ctttatgtct tcagtttgct ggggctgggc ttcctgtgtt ctgcggtctg ggcgtgggtg
      661 gacgtctgcg ctgctgacat attttcctgg aactttgtgc tgtttgtcat ctgcttcatg
      721 cagttcgttc acatcgcgta ccaggttcac agcatcacct tcgcccgaga attccacgtg
      781 ctgtatagct ccctcttcaa gcccctcggg atccctttgc ccgtcttcag aacaattgcc
      841 ctgagctccg aagtggttac tctggaaaag gagcactgtt acgccatgca ggggaagacc
      901 tccattgata gactctccgt gctggtctca ggaaggatca gagtgaccgt cgatggcgaa
      961 tttctgcact atatttcccc ctttcagttc ctggattctc ccgagtggga ttcgctaaga
     1021 cccacagagg aaggcatttt tcaggtcact ctcacagcag acactgactg tcgatacgtg
     1081 tcctggagga gaaaaaaatt gtatctgctc tttgctcagc atcgatacat ctcccgcctg
     1141 ttttctgttt taatcggcag tgacattgca gataaactct atgccttgaa cgacagagta
     1201 tacataggga agaaacatca ctatgatatc cggttaccca actactatca gctgtcaagt
     1261 ccagacttgt ccagatcacc cctaacagaa cagtttcgga attccagaca acattgtaac
     1321 aaatgacatc aaaacctgaa gttgttttga tggctgggaa aaaaaaaaag acttcatcat
     1381 tccccagata agatagcaca ctattattct attttacaac tgaaactcag agtcaagatg
     1441 ccatcgccag gtgtttatta attcatttta acttccgcac ctcaaataaa ctttacaaac
     1501 gttcatgtat tccttgctgt tgtaatggaa gatgaataat gacgggcgct ctgccccttc
     1561 tctgcatcag aactgagaga ataatttcgt attctctgat atttcctcca acatgctgtc
     1621 tgatactgtt ggcacaggag aagcccttag caaatgtcag caggagagca ggttgctatg
     1681 gtccacagac ccatttctag aatctgcctt ttcctgacaa tctctgatga atgtaagtta
     1741 cactgttgct gtaggaagca gttcctttta tatgtgacat tctctgacat gacttagaaa
     1801 gaagaataaa tgtaagaaac agtaa
//
