LOCUS       NM_001024883            2967 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus protein-O-mannose kinase (Pomk), mRNA.
ACCESSION   NM_001024883 XM_224953
VERSION     NM_001024883.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2967)
  AUTHORS   Yoshida-Moriguchi,T., Willer,T., Anderson,M.E., Venzke,D.,
            Whyte,T., Muntoni,F., Lee,H., Nelson,S.F., Yu,L. and Campbell,K.P.
  TITLE     SGK196 is a glycosylation-specific O-mannose kinase required for
            dystroglycan function
  JOURNAL   Science 341 (6148), 896-899 (2013)
   PUBMED   23929950
REFERENCE   2  (bases 1 to 2967)
  AUTHORS   Vogel,P., Read,R.W., Hansen,G.M., Payne,B.J., Small,D., Sands,A.T.
            and Zambrowicz,B.P.
  TITLE     Congenital hydrocephalus in genetically engineered mice
  JOURNAL   Vet Pathol 49 (1), 166-181 (2012)
   PUBMED   21746835
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097466.1.
            
            On Jun 17, 2005 this sequence version replaced XM_224953.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097466.1, FQ125227.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2967
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.4"
     gene            1..2967
                     /gene="Pomk"
                     /gene_synonym="RGD1310810; Sgk196"
                     /note="protein-O-mannose kinase"
                     /db_xref="GeneID:306549"
                     /db_xref="RGD:1310810"
     exon            1..25
                     /gene="Pomk"
                     /gene_synonym="RGD1310810; Sgk196"
                     /inference="alignment:Splign:2.1.0"
     exon            26..116
                     /gene="Pomk"
                     /gene_synonym="RGD1310810; Sgk196"
                     /inference="alignment:Splign:2.1.0"
     exon            117..280
                     /gene="Pomk"
                     /gene_synonym="RGD1310810; Sgk196"
                     /inference="alignment:Splign:2.1.0"
     exon            281..567
                     /gene="Pomk"
                     /gene_synonym="RGD1310810; Sgk196"
                     /inference="alignment:Splign:2.1.0"
     CDS             289..1338
                     /gene="Pomk"
                     /gene_synonym="RGD1310810; Sgk196"
                     /EC_number="2.7.1.183"
                     /note="sugen kinase 196; probable inactive protein
                     kinase-like protein SgK196"
                     /codon_start=1
                     /product="protein O-mannose kinase"
                     /protein_id="NP_001020054.1"
                     /db_xref="GeneID:306549"
                     /db_xref="RGD:1310810"
                     /translation="MGQQHGARNGLTHRELPRGMGLLLAMALMNVVLYVCLDHLFISP
                     GRATEDPRRCPPGYFRMGRMRNCSRWLSCEELRTEVRQLKLVGEGAVKRVFLSEWNEH
                     KVALSRLTRLEMKEDFLHGLRMLTSLQSQHVVTLAGFCEEDGTILTEYHPLGSLSNLE
                     ETLNLSKYRDVNTWQHRLRLAVEYVSIINYLHHSPLGTRVMCDSNDLPKTLSQYLLTS
                     NFSIVANDLDALPLVDHGSRVLVKCGHRELHGDFVAPEQLWPYGEDTPFQDDLMPPYD
                     EKIDIWKIPDVSSFLLGHVEGSDMVRFHLFDIHKACKNQFPAERPTAQNVLDAYQKVF
                     HSLRDTVMSQTKEML"
     exon            568..2942
                     /gene="Pomk"
                     /gene_synonym="RGD1310810; Sgk196"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgagccgga tttggtggtc tccagttccc agatccgcaa atggagaatg tgaaagaaca
       61 accatgaggc ttcaccaaca ctcggtgtga atgaggacat cagaggtgca ccattgcgtg
      121 ctatgtgaat gcagtatctg cagaggccag aaggcacctt cagatctccc gggactggag
      181 ttctagagtc tgtgagctgc catggggagc caagcagggc actgagggac acaggcgtgt
      241 ggttggaggc cttgctggga ggaaaaagag actgctgaag ggactgacat gggacagcaa
      301 catggagcca ggaatggtct tacccacaga gagctccccc ggggcatggg gctactgctc
      361 gccatggccc ttatgaacgt ggtcctctac gtctgcctcg atcatctctt catctcccct
      421 gggcgagcta ctgaggaccc tcggcgctgc cctccgggtt acttcagaat ggggcggatg
      481 agaaactgct cgcgctggtt gtcctgtgag gagctgagga cggaagtcag gcagctgaag
      541 ctcgttgggg aaggagccgt gaagagagtc tttctgtctg aatggaatga acacaaagtc
      601 gctctctccc ggctcaccag gctggaaatg aaggaggact tcctacatgg actgcggatg
      661 ctgacatcgc tacagagcca gcacgtggtc acactggccg gcttctgtga ggaagacggc
      721 acgattctca ccgagtacca ccccttaggt tccctgagca acctggaaga aacactaaac
      781 ctttcaaagt accgagacgt gaacacttgg cagcacaggc tgaggctagc cgtggagtac
      841 gtcagcatca ttaactacct gcaccacagc cccctgggca cgcgggtcat gtgtgactct
      901 aacgacctgc ccaaaacgtt gtcccagtac ctgctgacaa gtaacttcag cattgtggct
      961 aacgacctgg acgcgctgcc cctggtggac cacggctcta gggtacttgt gaagtgtggc
     1021 cacagggagc tccacgggga tttcgtggcc ccagagcagc tgtggcccta cggagaagac
     1081 acacccttcc aagatgacct catgcccccc tatgatgaga agattgacat ctggaagatt
     1141 ccggacgtct ccagtttcct tctggggcac gtggaaggga gtgacatggt tagattccat
     1201 ttgtttgata tccataaggc gtgtaagaac cagttccccg cagagagacc caccgctcag
     1261 aacgttctag acgcctacca gaaggttttc cactccctcc gagataccgt gatgtcgcag
     1321 acgaaagaaa tgctgtaaaa atacaccatt gagtgatggc ttctggctga ttggtgtccc
     1381 agctgttctt gatgatggag gaggaacttt ggatggatgg acgttgaccc cggccattct
     1441 gccacggatg ccctcctcta tgctggcaca tttgagtgtt ttgctctcct gggaacagga
     1501 ttggtaggtc aaagggagtt caaagggagc gatcaaatgg caatcttgaa gacatgttgc
     1561 ctgccctggg aacagttttt atacactagt aggaaacaga catctttcag tgaccatttg
     1621 tggaaaacaa aacaaaacac aacccactag ttcctcagag accatctctc ctaattcaaa
     1681 aagctctcct ggaagctggg gatgttttag ctcagtggca gggcacttgg cctggttatg
     1741 tacaaagctt tggatctgac ccttagcgtg tgcacacaca ctcttgctcg aacagtgacc
     1801 atagcatgtg cacacacact catgctcgaa cagtgaccat agcatgtgca cacacaccca
     1861 tgctcaaaca gtgaccatag catgtgcaca cacactcatg ctcaaacaat ggccatcctg
     1921 gatgccagaa gtgtgcccct ctttcttgtc agtgaggtcg ttgtcagcgt tggtgatggt
     1981 tttctgtgac gttcctactc tgtctcctgt cactgagcca agtatgtatg gcttttaggc
     2041 actttgtggg ttcttctttc ttccaccctg gttcttccct ttcaaccccc taacactgga
     2101 taggagagaa aagacagaga aaggagagcg ggtgacgttg ttgttagact acttcctgtc
     2161 gataaggggc atcgagttcc ttgaagcaaa tctgatcttt gctgtcggga tatctgatct
     2221 cttgtttcct gctacttcac aaatggcaac caacagcaaa caacaaacaa cccatcccgg
     2281 gggtcctagc atttatatac ctatgaaaag tccccagaat tccaaacatc acgcaatcaa
     2341 aggaactctc tgcagctgac agaaccacac ccctgctaga gcaccaggca aatcatagtc
     2401 agctgtcggg aacaacctga agcagcccca cgtcccacac ctgagattaa aacgaaaaca
     2461 ttctgatctg tgttttcaaa gaagtcaaag tgcaccatgg cggggttggg gatttagctc
     2521 agtggtagag cgcttgccta gcaagcacaa ggccctgggt tcggtcccca gctccgaaaa
     2581 aaagaaaaaa aaaaaaagtg caccatggca gcatgccttt gagattgtcg atgtctagaa
     2641 atgtttggag cagcaagttg aaggaacgtt cttacctgcc ttggagggtg ctttgaaatt
     2701 cctgctgacc tggagtctct ttctgtgtga atgtttcaca tccagtgtcc ctctgtacta
     2761 gaaagtactg agcctaccct gggcttgcgt gactgttctt taaaacatcg aggagccacg
     2821 aatgctggtg cccacctgta attccagcac ctgggagaca ggaggatcca agagttcagg
     2881 gctatcctgg gctatagacc atggccctgt ccacccccac cccaataaaa aacaaaaagg
     2941 tcaaaaaaaa aaaaaaaaaa aaaaaaa
//
