LOCUS       NM_001107784            4598 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus RNA polymerase III subunit F (Polr3f), mRNA.
ACCESSION   NM_001107784 XM_001054408 XM_230642
VERSION     NM_001107784.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4598)
  AUTHORS   Renaud M, Praz V, Vieu E, Florens L, Washburn MP, l'Hote P and
            Hernandez N.
  TITLE     Gene duplication and neofunctionalization: POLR3G and POLR3GL
  JOURNAL   Genome Res 24 (1), 37-51 (2014)
   PUBMED   24107381
REFERENCE   2  (bases 1 to 4598)
  AUTHORS   Lefevre S, Dumay-Odelot H, El-Ayoubi L, Budd A, Legrand P, Pinaud
            N, Teichmann M and Fribourg S.
  TITLE     Structure-function analysis of hRPC62 provides insights into RNA
            polymerase III transcription initiation
  JOURNAL   Nat Struct Mol Biol 18 (3), 352-358 (2011)
   PUBMED   21358628
  REMARK    Erratum:[Nat Struct Mol Biol. 2011 Apr;18(4):516]
REFERENCE   3  (bases 1 to 4598)
  AUTHORS   Dumay-Odelot H, Durrieu-Gaillard S, Da Silva D, Roeder RG and
            Teichmann M.
  TITLE     Cell growth- and differentiation-dependent regulation of RNA
            polymerase III transcription
  JOURNAL   Cell Cycle 9 (18), 3687-3699 (2010)
   PUBMED   20890107
  REMARK    Review article
REFERENCE   4  (bases 1 to 4598)
  AUTHORS   Chiu YH, Macmillan JB and Chen ZJ.
  TITLE     RNA polymerase III detects cytosolic DNA and induces type I
            interferons through the RIG-I pathway
  JOURNAL   Cell 138 (3), 576-591 (2009)
   PUBMED   19631370
REFERENCE   5  (bases 1 to 4598)
  AUTHORS   Hu P, Wu S, Sun Y, Yuan CC, Kobayashi R, Myers MP and Hernandez N.
  TITLE     Characterization of human RNA polymerase III identifies orthologues
            for Saccharomyces cerevisiae RNA polymerase III subunits
  JOURNAL   Mol Cell Biol 22 (22), 8044-8055 (2002)
   PUBMED   12391170
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474026.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_230642.4, XM_001054408.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132262,
                              SAMD00132264 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4598
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q41"
     gene            1..4598
                     /gene="Polr3f"
                     /note="RNA polymerase III subunit F"
                     /db_xref="GeneID:311487"
                     /db_xref="RGD:1306428"
     exon            1..273
                     /gene="Polr3f"
                     /inference="alignment:Splign:2.1.0"
     CDS             47..1162
                     /gene="Polr3f"
                     /EC_number="2.7.7.6"
                     /note="polymerase (RNA) III (DNA directed) polypeptide F,
                     39 kDa; polymerase (RNA) III subunit F"
                     /codon_start=1
                     /product="DNA-directed RNA polymerase III subunit RPC6"
                     /protein_id="NP_001101254.1"
                     /db_xref="GeneID:311487"
                     /db_xref="RGD:1306428"
                     /translation="MGAPSRPHEEGPARPKEEGPSSLPRPHPWRAPPPVPENSSALLR
                     ATFPLVLKTTLMAEVKVKVQPPDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEA
                     QQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNK
                     GIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTG
                     GAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYIC
                     ELGISKVELSMEDIETILNTLIYDGKVDMTIIAAKEGTVGSVDGHMKLYRAVNPILPP
                     TGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF"
     exon            274..391
                     /gene="Polr3f"
                     /inference="alignment:Splign:2.1.0"
     exon            392..459
                     /gene="Polr3f"
                     /inference="alignment:Splign:2.1.0"
     exon            460..527
                     /gene="Polr3f"
                     /inference="alignment:Splign:2.1.0"
     exon            528..640
                     /gene="Polr3f"
                     /inference="alignment:Splign:2.1.0"
     exon            641..784
                     /gene="Polr3f"
                     /inference="alignment:Splign:2.1.0"
     exon            785..892
                     /gene="Polr3f"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1084
                     /gene="Polr3f"
                     /inference="alignment:Splign:2.1.0"
     exon            1085..4598
                     /gene="Polr3f"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggacaagttg cggcgaccct gctgagcaag gcggagcagg cacatcatgg gcgccccaag
       61 ccgacctcat gaagaaggcc cggcgcgacc gaaggaagaa ggtccctcgt ccctcccacg
      121 cccccacccc tggcgtgcgc ctccaccggt tcccgagaat tccagcgcgc tcctccgggc
      181 cacttttcct ctagtcttga aaaccaccct catggcggag gtgaaggtga aggtgcagcc
      241 gccggacgcg gatccggtgg aaatagaaaa cagaattata gaattatgcc accagttccc
      301 tcatggaatc acagatcaag taattcagaa tgaaatgcct cacatagaag cccagcaacg
      361 ggcagtggcc atcaatagac tattgtccat gggtcagttg gatcttttac ggagtaatac
      421 aggcctttta tatagaataa aggattctca gaatgctggt aaaatgaagg ggtccgataa
      481 ccaggaaaag ctagtctacc aaatcataga ggatgcaggg aataaaggaa tatggagcag
      541 agatattcgg tacaaaagca acttgccatt aacagaaatc aacaaaattc tcaagaattt
      601 ggaaagtaaa aagcttatta aagctgtgaa gtctgtagca gcttccaaaa agaaggttta
      661 catgctctat aacctgcagc cagaccggtc tgtgactggc ggggcctggt acagtgacca
      721 ggattttgaa tctgaatttg ttgaggtgct taatcaacag tgtttcaaat tcctacagag
      781 caaggcagag actgcaagag aaagtaaaca gaatccagtg atacaaagaa acagttcatt
      841 tgcttcatca catgaagtgt ggaagtacat ctgtgaactg ggcatcagta aggtagagtt
      901 gtccatggag gacattgaaa ccatcttgaa cacactcatt tatgatggca aagtggatat
      961 gactatcatt gctgccaagg aaggcactgt tgggagcgtt gatggacaca tgaaactgta
     1021 cagggcagtc aacccaatcc tcccacctac aggcttggtc cgggcaccct gtggactctg
     1081 tcccgttttt gatgactgcc atgaaggtgg tgaaatttca ccatctaatt gtatttacat
     1141 gacagagtgg ctcgaatttt aatagagctg tgaactttat ttacatttgg caaactgaac
     1201 ttcgtgggaa acaaataatt catgatggag tgtcaaatta ctttgagagc atacttcaca
     1261 ataatgggta ctgacttgct gctatggaaa cacttattta tgaagacaga aaacaaagga
     1321 gattaagttt aataaagttt aattgggaag tctcttcttc attaagtaaa ataccttgaa
     1381 ggtctggaag actaaggaaa agaagccagc aaacctacgt tgaccatgta ctgagataaa
     1441 ggctggagtg agaagatgcc cacttgagtt acttaagatc gtcattgaaa actcatcggg
     1501 tttattaccg ccatttctgt ttggtttttc ttgggttttg ttgagaagaa attacaagtg
     1561 gtgcaggcag gaccagctgg tgatgggagt gtgtgtgcca gctcgggcct gggttgtaaa
     1621 gtgggtattt ctttttctac accatctgtt tttcacccca gtaggactct cagaggagcg
     1681 cgcctccata ccgacatccc tcccaaacgc tgttgtccag gacatgtttc cacatcactg
     1741 atcctccata ccaaaggaaa taatctcact gtcctttctt ggtaaggcca taactttctc
     1801 tgtatgcctt aagtgtatta tttcctggat tttttttttc agattcttat tccatgcctg
     1861 tagtgtgact ctaccacgag tgccaaattc taattttata gtctaatctc tacatggaat
     1921 gtgctaaatg ggacctttgg aaggtgacac tgtgtgtaga atcctcatga gtggagttag
     1981 ggcctgtata gaagagaccc aaagtcttct gttacccact gtcatggaag gacacaagaa
     2041 aagaataagg aagtgagcct tcatcagatg agtaatctac tggcaccttg gacttcccag
     2101 cttttagaat tatttccgtg ataaaccatc aatctacagt gcgctgtcaa agcagataga
     2161 ctagataata gctaatcttt taactaaaat taaaacttaa aactagctgg gtgaggtgat
     2221 gcattctttg agtcccagcg attgggaggc agaggtaggc agatcgtgat gagttcaagg
     2281 ctagcccagt ctacatagtg aattccagga catccagggt tacataggga tagaccctgt
     2341 ctccaacatt aaaacagaac attacccttc actcactctc taaggggtct tcagctggtc
     2401 cccttttatt cttcaaaaaa caactgtggt gtgacaagtc taagcagaaa gctatcactg
     2461 tgtaccagtt gcacagaaga cagccatgta cctttgaagg atctcagcag gtggattgtc
     2521 tttttttttt tttttttttt ttttttttga gacagggttt gtaagataag actagtgctt
     2581 ctcttacact ggagtaagat ccagttagag tagactttgt taccattgcc acccttcaca
     2641 agaagtggag gaaaaaactt acattttata tataatctag cattcaaaaa aagctggtga
     2701 cattaaatgc ttactctgta gagctggcca tggaattcat ctgataaaaa tgagctagtg
     2761 agtttgattt tactgatcta tatatcaggg taactaatga ttgtgttcac ttagagcact
     2821 gccaaaaggt ggtagagctc agctccaaag aggagcacaa tacaaaccct ttcagttggc
     2881 ccatgctttt ggattatata tttaaaaaac ttagtaaaaa caaacaacca aaaccttaga
     2941 cacaaagtaa gctgagtata gtggagaagg cctttaatcc aagtacccag gaggcagagg
     3001 caggcagatc tctgagtgag aggccaggct ggtctataca gcccagtgta cagccagggc
     3061 taccctatcg tgaaagacca gatgacagta agagagaagg agccgagtta ctgtctaagc
     3121 gcgctctgca ttctatcctt tttgtgttgt tggacataga gcgtctctcc acgctggcct
     3181 ggaattcagt ttacggtctt agggtctagc ctggccttga acttgtggtt ctcctgcttc
     3241 agcttcccag gtgctggcat gcagccatgc ctggctttgc attgtcttga taattagagt
     3301 ttttaaatca gcactcagtg gctagaaatg ctccttacct caccagcata aggagatagc
     3361 ttaaatgttt tttctcacca ttacttttta ctctgaatat ttttgcctta taacattttt
     3421 ttactctgag tattaactga gagggatagg taagtttgaa aatgttgcaa ctgttctgta
     3481 aataaaatga attctacaga aataagctaa caaaagaaat cataatgtca caaactcaag
     3541 ctgcagatga agcccagatt cttcatactt cccacttcat attcggcact ttcttcaccg
     3601 agaacacaca ctaatctgtt gaggaccccg aataaaagtg atccacaaaa aaaggagaca
     3661 tcatgagatg atttagtggt ttttagatat atttctttct ttttttttcc cccctggagc
     3721 tgaggaccga acccagggcc ttgtgcttgc taggcaagcg ctctaccact gagctaaatc
     3781 cccaacccca atttagtggt ttttaatgaa tgtggattct cacattaaac tttcagtttg
     3841 gcattaaata agttttatat aagggttttg gtggtgatca attaagcaac gaaatcggac
     3901 aattccattc tgtgatggac ccagtgatag aatactcctg gtatgatgag gtctctggcc
     3961 ccaaccatca gcccaacagc gaagggaaaa ggtagtttca gatttactta tagcaggtga
     4021 gagatgaata caaaataggt gccctgtggc agtgtggtcc agtaagacag catcttgaac
     4081 tcagtcctgc ttctgcgtgc tcctattagg tttatagata ggcaccacaa catctagaca
     4141 agtagcattt tctaccatga tggaaagagt ctgtatttgg tgtttaatac aaaaaccttg
     4201 agccagatgg ctggctggca cttgacacga acgattagga actaagtttt tatttagttg
     4261 cctgtgcata ctgtttatat tagacagcac agctcaacag agagctctct tgcatattct
     4321 ccccctggga attagggaat ttcacactga aatgtgttag tttataattg agctttttaa
     4381 agttaggaaa acaaaaaaag ttttcattat gtgtgtgggt gtgtgtgtgt ataacagact
     4441 tttttgcagt gattcagcca aacctaaaat ccaatttgag tctacttgaa tttgaattat
     4501 ttaccctgct tttttgaaat cttaaaaaat taacatatga ataacagttt gcaatttgtt
     4561 ttctgttgca ggataaaaat atattcattt gatatata
//
