LOCUS       NM_001108503            3007 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus RNA polymerase III subunit E (Polr3e), mRNA.
ACCESSION   NM_001108503 XM_001075970 XM_341919
VERSION     NM_001108503.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Renaud M, Praz V, Vieu E, Florens L, Washburn MP, l'Hote P and
            Hernandez N.
  TITLE     Gene duplication and neofunctionalization: POLR3G and POLR3GL
  JOURNAL   Genome Res 24 (1), 37-51 (2014)
   PUBMED   24107381
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Dumay-Odelot H, Durrieu-Gaillard S, Da Silva D, Roeder RG and
            Teichmann M.
  TITLE     Cell growth- and differentiation-dependent regulation of RNA
            polymerase III transcription
  JOURNAL   Cell Cycle 9 (18), 3687-3699 (2010)
   PUBMED   20890107
  REMARK    Review article
REFERENCE   3  (bases 1 to 3007)
  AUTHORS   Hu P, Wu S, Sun Y, Yuan CC, Kobayashi R, Myers MP and Hernandez N.
  TITLE     Characterization of human RNA polymerase III identifies orthologues
            for Saccharomyces cerevisiae RNA polymerase III subunits
  JOURNAL   Mol Cell Biol 22 (22), 8044-8055 (2002)
   PUBMED   12391170
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473956.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_341919.3, XM_001075970.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132262,
                              SAMD00132263 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q36"
     gene            1..3007
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /note="RNA polymerase III subunit E"
                     /db_xref="GeneID:361640"
                     /db_xref="RGD:1308086"
     exon            1..127
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            128..199
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     CDS             164..2290
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /note="RNA polymerase III polypeptide E; polymerase (RNA)
                     III (DNA directed) polypeptide E; polymerase (RNA) III
                     subunit E"
                     /codon_start=1
                     /product="DNA-directed RNA polymerase III subunit RPC5"
                     /protein_id="NP_001101973.1"
                     /db_xref="GeneID:361640"
                     /db_xref="RGD:1308086"
                     /translation="MANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPH
                     LSAKIKPKQQKVELEMAIDTLNPNYCRSKGEQIALNVDGACTDETSTYSSKLMDKQTF
                     CSSQTTSNTARYAAALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGD
                     SSQDEAEEDVKQITVRFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRS
                     EHERQYLLCQGSSGVENTELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTL
                     PLADQIKVLMKNVKVMPFANLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYP
                     KDSSSPHSGMPAEVLCRGRDFVMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVV
                     RINRGWEFLLPYDLEFIKKHPDVVQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGPSA
                     PVVSGEQRVQTAKTKAQQNHAFLERELQRRKEQIRGTTVLPSVQIKEEPLSEEEADGD
                     ELEAEEEEPMDTAPSSCLSTKLANGLPAGRAVGGDSLNGHPIPGCASNPVARELKAFV
                     EATFQRQFVLTLSELKRLFNLHLAGLPPGHTLFSGVSDRMLQDTVLAAGCKQILVPFP
                     PQTAASPDEQKVFALWESGDMSDQHRQVLLEIFSKNYRVRRNMIQSRLTQECGEELSK
                     QEVDKVLKDCCVSCGGMWYLKGTVQS"
     exon            200..250
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            251..328
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            329..444
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            445..527
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            528..635
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            636..685
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            686..805
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            806..891
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            892..936
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            937..1028
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..1149
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            1150..1231
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            1232..1291
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            1292..1449
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            1450..1511
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            1512..2029
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            2030..2107
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            2108..2233
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
     exon            2234..3007
                     /gene="Polr3e"
                     /gene_synonym="RGD1308086"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acgtgtccgc cggagtttct ccagcagcaa catggccgct ccctgataga agacccggcc
       61 gccgccgtct ctgcagccca cgggtccctg ggccgttccg ccgcccgcgt gcggccccgg
      121 cggagagatt gagttgagga ctgtgtggcg ggctctccct agtatggcca atgaagaaga
      181 tgacccagtc atacaggaga tcgatgtgta cttggccaaa agtctggcag agaagctgta
      241 tctctttcag tatcctgttc gtcctgcttc gatgacctat gatgacattc cacatctctc
      301 agccaagatc aagcccaaac agcagaaggt tgagcttgag atggccatcg acaccctgaa
      361 tcccaactac tgccgcagca aaggggagca gattgcattg aacgtggatg gtgcctgtac
      421 tgacgagact agcacatatt cctcaaagct gatggacaag cagaccttct gctcctccca
      481 gaccaccagc aacacggctc gttacgcggc tgcactctac aggcaaggcg agctccacct
      541 gacgccttta catggcatcc tacagcttcg gcccagcttc tcctaccttg ataaggcaga
      601 tgccaagcac cgagagaggg aggcggccaa tgaggcaggg gattcttctc aggacgaggc
      661 agaagaagat gttaagcaga tcacggtacg gttctccagg ccagagtcag agcaggctcg
      721 ccagcgtcgc gtgcagtcct atgagttctt gcagaagaag catgcagagg aaccctgggt
      781 ccacctacac tactatggca tgagggatag ccgctcagag catgagcgcc agtacctgct
      841 gtgtcaggga tccagcgggg tagagaacac ggagctcgtc aagtcgccca gcgaatacct
      901 catgatgctc atgccaccca gcccggagga ggagaaggac aagcccgtag ctcccagcaa
      961 tgtcctgtcc atggcccagc tgcgtacatt gcccctggct gatcagatta aagtcctgat
     1021 gaagaacgtg aaagtcatgc cttttgctaa cctcatgagc ctcctgggcc cctctgtgga
     1081 ctctgtggct gttctgcgtg gcatccagaa ggtggcgatg ttggtccaag gaaactgggt
     1141 ggtgaaaagt gacatcctgt atcctaagga ttcttccagc cctcatagtg gtatgcctgc
     1201 tgaggtgctc tgcaggggcc gagactttgt catgtggaag ttcacacaga gccgatgggt
     1261 ggtaagaaag gaggtggcag cagtgaccaa actctgcgct gaggatgtga aggactttct
     1321 ggaacacatg gctgtagtga ggatcaacag aggctgggag ttcttactgc cttacgacct
     1381 ggagtttatc aagaagcatc cagatgtggt ccagcggcaa cacatgctgt ggtcgggcat
     1441 ccaggccaaa ttagaaaaag tctataatct cgtaaaagaa accatgccaa agaagccgga
     1501 tggaccatca gcgcctgttg tctctgggga acagcgggtc caaacagcca aaaccaaggc
     1561 ccagcagaac catgctttct tggagcgtga gctgcagcga cggaaggagc agattcgggg
     1621 aaccacagtc ctgcccagcg tgcagatcaa ggaggaaccc ctgagtgagg aggaagccga
     1681 tggggatgag ctggaggctg aggaagaaga acccatggac actgcaccca gtagttgcct
     1741 cagcaccaag ttggccaatg ggctgcctgc tgggcgggca gtgggtgggg acagcctaaa
     1801 tgggcaccca attccaggct gtgccagcaa cccggttgcc cgggaactga aggcttttgt
     1861 ggaagccacc tttcagagac agtttgtgct cacgttgagc gaactcaagc gcctcttcaa
     1921 cctgcacctg gcaggcctgc ccccgggcca cacactcttc agtggtgtct cagaccgaat
     1981 gctacaggat acggtgctgg ccgctggctg caagcagata ctggtgcctt ttcccccaca
     2041 gactgctgct tcccctgatg agcagaaggt atttgccctc tgggagtctg gagacatgag
     2101 tgaccagcat cgacaggttt tgcttgaaat attttccaaa aattaccgag tacgtcggaa
     2161 tatgatccag tctcggctga ctcaagaatg tggagaagag ctaagcaagc aggaggtgga
     2221 taaagtgcta aaggactgtt gtgtaagctg tggtggcatg tggtacctta aggggacagt
     2281 acaatcctga caatagtagc aaaccactaa ctcaacgaac ccaagcccag ggaaggacgg
     2341 cagagccaca cgtagtctcg acttgcctca agacacagga agaggatctg cccacctggt
     2401 ggcctgtggc actgcctggc ccagaggaca gaggggctca cactcagcca gtggcagggt
     2461 cagcgtaagt gagatcgctc ccaacagaga ccagccgggc cttctttgca gtacaatttg
     2521 aaattcctga tgtattttgc ttattgggtt tcattctcat aataaagaga gtgtacactg
     2581 acatgggcag gattatgaaa atcatggttt aatattttcc tcttttaaat gaatgccaac
     2641 atagttaaag ttatgtttac aagatgaaga gaaccttaag gtttttaata tttaaaatgc
     2701 ctagaagcta ataattagtc ttagagtttc tctctgctaa gacttctgcc aattttatta
     2761 aaccaaattg aacattttac tgttgggttt ctaaggccac tttaccttat acagcagcct
     2821 gctttctgta gcggtctcaa ctgtttacac agaccatagc aaacattcta ttaactccat
     2881 cgtctcctac tgtttgcata aaggtgcaaa tggaaccagg taagtgtgga acagtgtgta
     2941 agcgaggtta tcactttgat gtaaaaaaaa ttatattttg tgtattttta aaataaatgc
     3001 taacact
//
