LOCUS       NM_001031653            1921 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus RNA polymerase III subunit D (Polr3d), mRNA.
ACCESSION   NM_001031653 XM_224335
VERSION     NM_001031653.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1921)
  AUTHORS   Renaud M, Praz V, Vieu E, Florens L, Washburn MP, l'Hote P and
            Hernandez N.
  TITLE     Gene duplication and neofunctionalization: POLR3G and POLR3GL
  JOURNAL   Genome Res 24 (1), 37-51 (2014)
   PUBMED   24107381
REFERENCE   2  (bases 1 to 1921)
  AUTHORS   Canella D, Bernasconi D, Gilardi F, LeMartelot G, Migliavacca E,
            Praz V, Cousin P, Delorenzi M and Hernandez N.
  CONSRTM   CycliX Consortium
  TITLE     A multiplicity of factors contributes to selective RNA polymerase
            III occupancy of a subset of RNA polymerase III genes in mouse
            liver
  JOURNAL   Genome Res 22 (4), 666-680 (2012)
   PUBMED   22287103
REFERENCE   3  (bases 1 to 1921)
  AUTHORS   Dumay-Odelot H, Durrieu-Gaillard S, Da Silva D, Roeder RG and
            Teichmann M.
  TITLE     Cell growth- and differentiation-dependent regulation of RNA
            polymerase III transcription
  JOURNAL   Cell Cycle 9 (18), 3687-3699 (2010)
   PUBMED   20890107
  REMARK    Review article
REFERENCE   4  (bases 1 to 1921)
  AUTHORS   Chiu YH, Macmillan JB and Chen ZJ.
  TITLE     RNA polymerase III detects cytosolic DNA and induces type I
            interferons through the RIG-I pathway
  JOURNAL   Cell 138 (3), 576-591 (2009)
   PUBMED   19631370
REFERENCE   5  (bases 1 to 1921)
  AUTHORS   Hu P, Wu S, Sun Y, Yuan CC, Kobayashi R, Myers MP and Hernandez N.
  TITLE     Characterization of human RNA polymerase III identifies orthologues
            for Saccharomyces cerevisiae RNA polymerase III subunits
  JOURNAL   Mol Cell Biol 22 (22), 8044-8055 (2002)
   PUBMED   12391170
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC099167.1.
            
            On Aug 12, 2005 this sequence version replaced XM_224335.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099167.1, SRR8487227.224699.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06621351 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p11"
     gene            1..1921
                     /gene="Polr3d"
                     /note="RNA polymerase III subunit D"
                     /db_xref="GeneID:306012"
                     /db_xref="RGD:1311816"
     exon            1..42
                     /gene="Polr3d"
                     /inference="alignment:Splign:2.1.0"
     exon            43..212
                     /gene="Polr3d"
                     /inference="alignment:Splign:2.1.0"
     CDS             48..1244
                     /gene="Polr3d"
                     /EC_number="2.7.7.6"
                     /note="polymerase (RNA) III (DNA directed) polypeptide D,
                     44kDa; polymerase (RNA) III subunit D"
                     /codon_start=1
                     /product="DNA-directed RNA polymerase III subunit RPC4"
                     /protein_id="NP_001026823.1"
                     /db_xref="GeneID:306012"
                     /db_xref="RGD:1311816"
                     /translation="MSEGNAAGEPSNPGGPRPLLSGGRGLVGRRPAPPLTPGRLPSIR
                     SRDLTLGGVKKKTFTPNIISRKIKEEPKEEVTMKKEKRERDRDRQREGHGRGRGRPEV
                     IQSHSIFEQGPAEMMKKKGNWDKTVDMSDMGPSHIINIKKEKRETDEETKQILRMLEK
                     DDFIDDPGLKNDTRNMPVQLPLAHSGWLFKEESEEPDVKPFSAGPKEEDMEVDVPAVK
                     VKEEPRDEEEEAKVKAPPRAARKTPGLPKDVSVAELLRELSLTKEEELLFLQLPDTLP
                     GQPPTQDIKPVKTEVQGEDGQMVVIKQEKDRETRLAENACTLADLTEGQVGKLLIRKS
                     GKVQLLLGKVTLDVTMGTTCSFLQELVSVGLGDSRTGEMTVLGHVKHKLVCSPDFESL
                     LDHKHR"
     exon            213..256
                     /gene="Polr3d"
                     /inference="alignment:Splign:2.1.0"
     exon            257..408
                     /gene="Polr3d"
                     /inference="alignment:Splign:2.1.0"
     exon            409..533
                     /gene="Polr3d"
                     /inference="alignment:Splign:2.1.0"
     exon            534..702
                     /gene="Polr3d"
                     /inference="alignment:Splign:2.1.0"
     exon            703..968
                     /gene="Polr3d"
                     /inference="alignment:Splign:2.1.0"
     exon            969..1121
                     /gene="Polr3d"
                     /inference="alignment:Splign:2.1.0"
     exon            1122..1896
                     /gene="Polr3d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tagaggtgag gtcgtgaaac tcggcgtaga gcctcaacgc aggaaccatg tcggaaggaa
       61 acgccgcggg cgagcccagc aatcctggag ggccccgacc ccttctctct gggggccggg
      121 gacttgtggg ccggcggccc gctcccccgc ttacgccagg ccgccttccc tccatccgct
      181 ctcgggacct cacccttggc ggtgtcaaga agaaaacctt caccccaaat atcatcagtc
      241 ggaagatcaa agaagagcca aaggaagaag taactatgaa gaaggaaaag cgtgaacggg
      301 acagagaccg ccagcgtgag ggtcatggac ggggacgtgg ccgcccagaa gtgatccagt
      361 cccattccat ctttgagcag ggtccagcag aaatgatgaa aaaaaaaggg aactgggata
      421 agactgtgga tatgtcagac atggggcctt ctcatatcat caacatcaaa aaagagaaga
      481 gagaaacaga tgaagaaacc aagcagatct tgcgcatgct ggagaaggat gatttcatcg
      541 atgacccagg gctaaagaat gacacacgga acatgccagt acaactgcca ctggctcatt
      601 cagggtggct tttcaaggag gagagtgaag agccagacgt taagcctttt tctgctggcc
      661 ccaaggaaga agacatggag gtggatgtgc cagctgtaaa agtgaaagag gagccacggg
      721 atgaggaaga ggaggcgaaa gtgaaagccc ctccaagagc agccaggaag acccctggtc
      781 ttccaaagga cgtgtctgtg gcagagctgc tgagggagtt gagcctcacg aaggaggagg
      841 agctgctgtt ccttcagctg cctgataccc tccctgggca gccgcctact caggacatca
      901 agcctgtcaa gacagaggtg cagggcgagg atggacagat ggtagtcata aagcaagaaa
      961 aggaccggga aaccaggcta gcagagaatg cttgtacctt ggctgacctg acagagggtc
     1021 aagtgggcaa gctactcatc cgcaaatcag ggaaggtgca gcttctcctg ggcaaggtga
     1081 ctctggatgt gaccatggga acaacctgtt ctttcctgca ggaactggtg tctgtgggcc
     1141 ttggggacag caggacaggg gagatgacag tcctaggaca tgtgaagcac aaacttgtat
     1201 gttctcctga ttttgaatct ctcttggatc acaaacaccg gtgaaatgga cagatggagg
     1261 aggatggtga ctgcccatga ccgctgccta ctccagacct ttgttctcaa agacatgcag
     1321 cccagttggg gcctctttaa cccacttgtt gcagcttttg gtggctatag tcccagtccc
     1381 cccaaccccc acactagggc ccatgctgcc ccccgccccc ccagcagcta tgagtgggaa
     1441 ttgacacagc atgagtatgg aaacgtcctc acttctggga acctgaccct gctatttatt
     1501 ttatttatgt cttaatcctc aactgactgc atcctcgcag agcaggatgg ggcaggcttc
     1561 tttttgggga gccatgggct acagggctca agggggtagg aaagaaccgg gataggatag
     1621 aactgccgga gacttaaaac tcagtctcag ctcactggtc tctagttcag tgtccctgaa
     1681 caaactacct aacctttctg agcctcgtag tcctcacctg acatgtgagg ataataccta
     1741 cctcacaggg ttggggtgag gatcaaacgg aatgttgtag atgagaactc cttgcacaag
     1801 accaggcata cattgtataa gggtgtgtat gtatgtatac acatatatac acatacccat
     1861 aggcgctcaa taaatgttag ttttcctttc ctttgcaaaa aaaaaaaaaa aaaaaaaaaa
     1921 a
//
