LOCUS       NM_001191878            4132 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus RNA polymerase III subunit B (Polr3b), mRNA.
ACCESSION   NM_001191878 XM_343188
VERSION     NM_001191878.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4132)
  AUTHORS   Renaud,M., Praz,V., Vieu,E., Florens,L., Washburn,M.P., l'Hote,P.
            and Hernandez,N.
  TITLE     Gene duplication and neofunctionalization: POLR3G and POLR3GL
  JOURNAL   Genome Res 24 (1), 37-51 (2014)
   PUBMED   24107381
REFERENCE   2  (bases 1 to 4132)
  AUTHORS   Dumay-Odelot,H., Durrieu-Gaillard,S., Da Silva,D., Roeder,R.G. and
            Teichmann,M.
  TITLE     Cell growth- and differentiation-dependent regulation of RNA
            polymerase III transcription
  JOURNAL   Cell Cycle 9 (18), 3687-3699 (2010)
   PUBMED   20890107
  REMARK    Review article
REFERENCE   3  (bases 1 to 4132)
  AUTHORS   Ablasser,A., Bauernfeind,F., Hartmann,G., Latz,E., Fitzgerald,K.A.
            and Hornung,V.
  TITLE     RIG-I-dependent sensing of poly(dA:dT) through the induction of an
            RNA polymerase III-transcribed RNA intermediate
  JOURNAL   Nat Immunol 10 (10), 1065-1072 (2009)
   PUBMED   19609254
REFERENCE   4  (bases 1 to 4132)
  AUTHORS   Hu,P., Wu,S., Sun,Y., Yuan,C.C., Kobayashi,R., Myers,M.P. and
            Hernandez,N.
  TITLE     Characterization of human RNA polymerase III identifies orthologues
            for Saccharomyces cerevisiae RNA polymerase III subunits
  JOURNAL   Mol Cell Biol 22 (22), 8044-8055 (2002)
   PUBMED   12391170
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jul 17, 2010 this sequence version replaced XM_343188.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.24613.1,
                                           SRR26643292.28820.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-72                JAXUCZ010000007.1  21030062-21030133   c
            73-105              JAXUCZ010000007.1  21024483-21024515   c
            106-162             JAXUCZ010000007.1  21024226-21024282   c
            163-227             JAXUCZ010000007.1  21024074-21024138   c
            228-303             JAXUCZ010000007.1  21020471-21020546   c
            304-404             JAXUCZ010000007.1  21019458-21019558   c
            405-496             JAXUCZ010000007.1  21017111-21017202   c
            497-614             JAXUCZ010000007.1  21013922-21014039   c
            615-723             JAXUCZ010000007.1  21012472-21012580   c
            724-846             JAXUCZ010000007.1  21005653-21005775   c
            847-966             JAXUCZ010000007.1  21000189-21000308   c
            967-1101            JAXUCZ010000007.1  20999485-20999619   c
            1102-1263           JAXUCZ010000007.1  20988264-20988425   c
            1264-1464           JAXUCZ010000007.1  20985743-20985943   c
            1465-1627           JAXUCZ010000007.1  20982817-20982979   c
            1628-1781           JAXUCZ010000007.1  20980311-20980464   c
            1782-1856           JAXUCZ010000007.1  20977301-20977375   c
            1857-1955           JAXUCZ010000007.1  20976689-20976787   c
            1956-2083           JAXUCZ010000007.1  20972122-20972249   c
            2084-2293           JAXUCZ010000007.1  20963783-20963992   c
            2294-2452           JAXUCZ010000007.1  20961675-20961833   c
            2453-2570           JAXUCZ010000007.1  20960347-20960464   c
            2571-2713           JAXUCZ010000007.1  20957070-20957212   c
            2714-2817           JAXUCZ010000007.1  20942416-20942519   c
            2818-2984           JAXUCZ010000007.1  20941784-20941950   c
            2985-3098           JAXUCZ010000007.1  20937476-20937589   c
            3099-3272           JAXUCZ010000007.1  20934562-20934735   c
            3273-4132           JAXUCZ010000007.1  20926866-20927725   c
FEATURES             Location/Qualifiers
     source          1..4132
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..4132
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /note="RNA polymerase III subunit B"
                     /db_xref="GeneID:362858"
                     /db_xref="RGD:1565311"
     CDS             1..3402
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /EC_number="2.7.7.6"
                     /note="polymerase (RNA) III (DNA directed) polypeptide B;
                     polymerase (RNA) III subunit B"
                     /codon_start=1
                     /product="DNA-directed RNA polymerase III subunit RPC2"
                     /protein_id="NP_001178807.1"
                     /db_xref="GeneID:362858"
                     /db_xref="RGD:1565311"
                     /translation="MDVLAEEFGSLTPEELAAPIPTVEEKWRLLPAFLKVKGLVKQHI
                     DSFNYFINVEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFNVTRPVSPHEC
                     RLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNE
                     CPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAV
                     KQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQ
                     IFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIY
                     TAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVI
                     PKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALG
                     MMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMED
                     GPIIKLAGNLGVEDVNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVSTFRLMRRAG
                     YINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDF
                     LHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPR
                     NTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNAT
                     VAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAA
                     TRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI
                     TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQE
                     DMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDV
                     CEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV
                     LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGY
                     SGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLAKYNE"
     exon            1..72
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            73..105
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            106..162
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            163..227
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            228..303
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            304..404
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            405..496
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            497..614
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            615..723
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            724..846
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            847..966
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1101
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            1102..1263
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            1264..1464
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            1465..1627
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            1628..1781
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            1782..1856
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            1857..1955
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            1956..2083
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            2084..2293
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            2294..2452
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            2453..2570
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            2571..2713
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            2714..2817
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            2818..2984
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            2985..3098
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            3099..3272
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
     exon            3273..4132
                     /gene="Polr3b"
                     /gene_synonym="RGD1565311"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggacgtgc tagctgagga gttcgggagc ctgactccgg aggagctggc tgcgccgatc
       61 ccgactgtgg aggaaaaatg gaggctgctt ccagcatttt taaaggtaaa aggcctggtg
      121 aaacagcaca tcgactcctt taactatttc attaatgtag agataaagaa gataatgaaa
      181 gccaacgaaa aggttacaag cgatgctgat cccatgtggt acttaaagta tcttaatatc
      241 tatgttggac ttcctgacgt cgaagaaagc ttcaatgtaa ctagaccagt gtcccctcat
      301 gagtgccgtc tgcgggacat gacgtactcc gcccccatca ccgtggacat cgagtatacc
      361 cgaggcagcc agaggataat ccgcaatgcc ttacccattg gcagaatgcc catcatgctc
      421 cgaagttcaa actgtgttct gacagggaaa actccagcag agtttgccaa actcaacgag
      481 tgtccattag acccaggtgg ctacttcatc gttaaaggag tggagaaagt cattcttatc
      541 caggagcagc tgtccaagaa caggatcatt gtggaggcag acaggaaggg ggctgttggg
      601 gcttcagtta ccagctccac ccacgagaaa aaaagtagaa ccaacatggc ggtgaaacaa
      661 gggcgctttt atctgaggca taacaccctg tctgaagata tacccattgt catcatattc
      721 aaggccatgg gtgttgagag tgaccaggaa attgtgcaga tgattggaac ggaggagcac
      781 gtgatggctg cgtttgggcc cagcctggag gagtgccaga aagctcagat cttcacccag
      841 atgcaggcgt tgaagtatat agggaataaa gtaagaagac aaagaatgtg gggaggtgga
      901 ccaaagaaga ccaaaataga agaagcaaga gaacttctgg cctctaccat tctgacccat
      961 gtaccagtta aggaattcaa tttccgagct aagtgtatct acacggcagt gatggtgcga
     1021 agggtgatct tggcccaagg agataacaag gtcgatgaca gagactatta cggcaacaag
     1081 cgactggagc tggcaggcca gctcttgtct cttctttttg aagatttgtt taaaaagttt
     1141 aattcagaaa tgaagaagat tgcagaccaa gtgattccta aacaaagagc agcccagttt
     1201 gacgtcgtga aacacatgcg ccaagaccag attaccaatg gcatggtcaa tgccatctcc
     1261 acgggaaatt ggtctctgaa gagatttaag atggaccggc agggtgtgac ccaagtgctg
     1321 tctcgcttgt cctatatatc tgcacttggc atgatgacaa gaatctcttc ccagttcgaa
     1381 aaaacaagaa aagtgagtgg ccctcgttct ctgcagccat ctcagtgggg aatgctctgt
     1441 ccctccgaca cacctgaagg agaggcctgc ggtttggtta agaacttggc cctcatgaca
     1501 catataacaa ccgacatgga agatggaccc attattaagt tagctgggaa cttgggagta
     1561 gaagatgtga atttattatg tggagaagag ctctcttacc caaatgtatt ccttgtcttc
     1621 ctgaatggta acatcctggg tgtcattcga gaccataaaa agcttgtgag cacgttccgg
     1681 ctgatgcgaa gagcaggcta catcaatgaa tttgtctcca tctccacaaa ccttacggac
     1741 cgatgtgttt acatttcctc tgatggcggg cgcttgtgca ggccttacat cattgtcaag
     1801 aaacagaagc ccgcagttac caataagcac atggaagagc tggctcaagg ttacaggaat
     1861 tttgaagatt tcttacatga gagtctggtt gagtacttag atgtgaatga agaaaatgat
     1921 tgtaacattg cgctctacga acatacaatt aataaagaca ccacccactt ggagattgaa
     1981 cccttcactc ttctcggtgt ttgcgccggc ctgatcccgt accctcatca caaccagtct
     2041 ccaagaaaca cctaccagtg tgccatgggc aagcaagcca tgggtaccat tggatacaat
     2101 cagcgaaaca gaattgatac actaatgtat ctactagcat atccacaaaa acccatggtt
     2161 aaaacaaaaa ccattgagtt gatagacttt gagaaattgc cagctgggca gaatgcaact
     2221 gttgccgtga tgagctacag cggctatgac attgaagacg cccttgtttt gaacaaggcc
     2281 tctctggaca gaggttttgg gcgttgtctc gtctataaaa acgctaagtg cacattgaag
     2341 cgatatacca atcagacttt tgataaggtg atgggtccca tgttggatgc tgctaccaga
     2401 aaacccatct ggcgacatga aattttagat gcagatggca tttgttctcc aggtgagaaa
     2461 gtagaaaaca agcaggtgct tgtaaacaag tccatgccca cagtgactca gattcctctg
     2521 gaagggagca acgtgccaca gcagccacag tataaggatg tgcccatcac gtacaaaggt
     2581 gcaacagact cttacatcga gaaagtgatg atctcttcca acgctgagga cgctttcctc
     2641 atcaagatgc tcctgagaca gacgcggcgt ccagagatcg gagacaaatt cagcagtcgc
     2701 catggacaaa agggtgtctg cggcctgatc gtcccccaag aagacatgcc gttctgtgac
     2761 tctggcatct gtcccgacat cataatgaac cctcacggct tcccatcgag aatgacggtt
     2821 ggaaagttga ttgagttgct ggccggcaag gcaggcgtgt tagacggcag gttccactac
     2881 ggcaccgcct ttggagggag taaagtgaag gacgtgtgtg aagacctcgt tcgccatggt
     2941 tacaactacc tggggaagga ctatgtcacc tcgggcatca ccggtgagcc cttagaagcc
     3001 tacatctatt ttgggcctgt gtactatcag aaactgaaac acatggtgct ggataaaatg
     3061 catgcccggg ccagaggacc acgagctgtc cttaccaggc agcccactga agggcgatct
     3121 cgcgatggcg gcctgcgtct tggagaaatg gagcgtgact gtttaattgg ctatggagcg
     3181 agtatgcttt tgctggagag actaatgatc tcaagtgatg ccttcgaagt tgacgtctgt
     3241 gggcagtgtg gactacttgg atattctggc tggtgtcact actgcaagtc ctcgtgccac
     3301 gtgtcctccc tccgcatccc atatgcctgc aagctgctct tccaggagtt gcagtccatg
     3361 aacatcatcc ccaggttgaa actggccaag tacaacgagt aaagacgtgc agtgctcacg
     3421 aggaggatgt agtctcggcg acctgtgcag ccagaggcag agggcgcacg gtgacttctc
     3481 tgctcattct gcttcctgga gaacggcgag ggccagcagc agctgaggtc cagaggctgg
     3541 cttgacacct tggacctgca tcctcgaacc gcaggaggtg ctgggcccca cacagcacag
     3601 caccgtgtgg agtcacacac agatgggcac aggctagaga aagtgccaac gcctattaat
     3661 tttgtcgttt gtttgtttgt ttgtttgttt gtgttgagtt gagttggagc ctcactctgt
     3721 atcccaggct ggattggaac tcaccccaat cctgccttcg tcttgcacaa gtgctggagt
     3781 catggatgtg agccagcata tctggtttgt ttatgttatt atgttttaaa atttacgtat
     3841 tagaaaaatc ttcctcctta aaatcccccc gacgtcctct ggttagcaga actctgggtt
     3901 cttgtcagat gtggaggaag taaagaatca tttgaattgg gactaagacg ttacctcagt
     3961 cagtcacgtg cctgttgcat atctgtgacc tgagttcacc cccagcagcc cgtgtaaggg
     4021 ctggacatgg cacctaacac cgtgtaaaat ccagtactgc ggggtggcag tggggaggag
     4081 acaggcaggc ccctggcgct tactgacagc gcatagccag tccgtgcgct tc
//
