LOCUS       NM_183402               2077 bp    mRNA    linear   ROD 07-APR-2024
DEFINITION  Rattus norvegicus RNA polymerase II subunit M (Polr2m), mRNA.
ACCESSION   NM_183402 XM_343422
VERSION     NM_183402.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2077)
  AUTHORS   Ni,Z., Olsen,J.B., Guo,X., Zhong,G., Ruan,E.D., Marcon,E.,
            Young,P., Guo,H., Li,J., Moffat,J., Emili,A. and Greenblatt,J.F.
  TITLE     Control of the RNA polymerase II phosphorylation state in promoter
            regions by CTD interaction domain-containing proteins RPRD1A and
            RPRD1B
  JOURNAL   Transcription 2 (5), 237-242 (2011)
   PUBMED   22231121
REFERENCE   2  (bases 1 to 2077)
  AUTHORS   Roginski,R.S., Mohan Raj,B.K., Birditt,B. and Rowen,L.
  TITLE     The human GRINL1A gene defines a complex transcription unit, an
            unusual form of gene organization in eukaryotes
  JOURNAL   Genomics 84 (2), 265-276 (2004)
   PUBMED   15233991
REFERENCE   3  (bases 1 to 2077)
  AUTHORS   Matsuda,K., Fletcher,M., Kamiya,Y. and Yuzaki,M.
  TITLE     Specific assembly with the NMDA receptor 3B subunit controls
            surface expression and calcium permeability of NMDA receptors
  JOURNAL   J Neurosci 23 (31), 10064-10073 (2003)
   PUBMED   14602821
REFERENCE   4  (bases 1 to 2077)
  AUTHORS   Roginski,R.S., Mohan Raj,B.K., Finkernagel,S.W. and Sciorra,L.J.
  TITLE     Assignment of an ionotropic glutamate receptor-like gene (GRINL1A)
            to human chromosome 15q22.1 by in situ hybridization
  JOURNAL   Cytogenet Cell Genet 93 (1-2), 143-144 (2001)
   PUBMED   11474202
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Nov 27, 2020 this sequence version replaced NM_183402.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF326772.2, BC079379.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMN12840105 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-152               JAXUCZ010000008.1  81020050-81020201   c
            153-785             JAXUCZ010000008.1  81017603-81018235   c
            786-990             JAXUCZ010000008.1  81015564-81015768   c
            991-2077            JAXUCZ010000008.1  81012770-81013856   c
FEATURES             Location/Qualifiers
     source          1..2077
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..2077
                     /gene="Polr2m"
                     /gene_synonym="Glurr; Grinl1a"
                     /note="RNA polymerase II subunit M"
                     /db_xref="GeneID:192147"
                     /db_xref="RGD:619847"
     exon            1..152
                     /gene="Polr2m"
                     /gene_synonym="Glurr; Grinl1a"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..1134
                     /gene="Polr2m"
                     /gene_synonym="Glurr; Grinl1a"
                     /note="protein GRINL1A; glutamate receptor-like protein
                     1A; glutamate receptor, ionotropic, N-methyl
                     D-aspartate-like 1A; DNA-directed RNA polymerase II
                     subunit M; polymerase (RNA) II (DNA directed) polypeptide
                     M; polymerase (RNA) II subunit M"
                     /codon_start=1
                     /product="DNA-directed RNA polymerase II subunit GRINL1A"
                     /protein_id="NP_899652.1"
                     /db_xref="GeneID:192147"
                     /db_xref="RGD:619847"
                     /translation="MCSLPRGFEPPAPEDLGRQSSAELRERLRRQERLLRNEKFICKL
                     PDKGKKISDTIAKLKAAISEREEVRGRTELFHPVSVDCKLRHKATTRVDTDIDKAQNS
                     DLMLDTSSLVPECSSVDIESSKTTSETQGPTHLTHKGNEETLATGCTVNTCPSARITT
                     QDPSSEVNEHLPQHSSQVEEISSSVDSLFITKLQKITIADQTEPSEENTSTENFPGLQ
                     SETPKKPHYMKVLEMRAKNPVPPPHKFKTNVLPTQQSDSSSHCHKGQSPASSEEHRRR
                     ARQHLDDVTAARLLPLHHLPAQLLSIEESLALQKEQKQNYEEMQAKLAAQKLAERLNI
                     KMQSFNPEGESSGRYREVRDEDDAQSSDEC"
     exon            153..785
                     /gene="Polr2m"
                     /gene_synonym="Glurr; Grinl1a"
                     /inference="alignment:Splign:2.1.0"
     exon            786..990
                     /gene="Polr2m"
                     /gene_synonym="Glurr; Grinl1a"
                     /inference="alignment:Splign:2.1.0"
     exon            991..2077
                     /gene="Polr2m"
                     /gene_synonym="Glurr; Grinl1a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggaaccctg cccgccgcac cagccgcagc ccgtgcgcaa tgtgctcgct gccccgcggc
       61 ttcgagcccc cagctcccga ggacttgggg cggcagagtt cggcggagct gcgggagagg
      121 ttgaggcgcc aggagagact tttgcgcaac gaaaaattca tttgcaaatt gcccgacaaa
      181 ggtaaaaaga tctcagacac cattgccaaa ctgaaagctg ccatttcaga acgtgaagag
      241 gtcagaggga gaactgaact atttcatcct gttagtgtag actgtaagct aaggcataaa
      301 gcaaccacaa gagttgatac cgacatagac aaggcccaga attctgacct gatgcttgat
      361 acttcatcat tagttcctga atgttcctca gtagacattg aatcatctaa aacaacctca
      421 gaaacacagg gacctacaca tctcactcac aaaggcaatg aagagacttt ggcgactggc
      481 tgcacagtga atacctgccc gtctgcccgc atcacaaccc aggatccctc atctgaagtt
      541 aatgaacatc tcccccagca ttcaagtcaa gtggaagaga tttccagcag cgtcgacagt
      601 ctgtttatca ctaaattgca aaagatcaca attgcagacc agactgaacc ctcagaagaa
      661 aacaccagca ctgagaactt tccaggactg cagagtgaga ctcctaagaa gcctcattac
      721 atgaaagtgc tagaaatgcg agctaaaaac ccagtgcccc ctcctcataa gtttaagacc
      781 aatgtgttac ccacacaaca gagtgactca tcaagtcatt gtcacaaggg tcagtctcct
      841 gcttcctcag aagagcatcg acgcagggct aggcagcatc ttgatgatgt tacagcagca
      901 cgccttcttc cgctccacca cctgcctgca cagctgctct ccatagaaga gtcgctggct
      961 ctgcagaaag agcagaagca gaattatgag gagatgcagg cgaagctcgc agcacagaaa
     1021 ctagccgaga gactgaatat taaaatgcag agcttcaatc cagaagggga gtcttcaggg
     1081 agataccgag aagtgaggga tgaagatgat gcccagtcct cggacgaatg ctgaagatga
     1141 gcgctgggag atcccgggag ttgactgttg agcttacatt gtctcattga acttcctaac
     1201 aagtatcaag acagtgtcag accttgttga gggacagcag ttttttaagt tatacaaagg
     1261 tagctacaaa tatgaaccca gtttgtcttt cagaagatga tcttcacatg cttgaacagt
     1321 ttaatatttg aacattgtgt ttggccgtgt tgtgttacag ttttgcagta tattgtgcat
     1381 tggtctgata ttttagtgtg agtagagcac acgttttctt taagatatct gctttttcct
     1441 tcttcgtatt cttatcagat agcattgctt acaccccttc tggtgaaata ctttgttatc
     1501 ccaggcacct aaagtgaatt aggaaggcct ggtcccctca ctcgagaaat gaggggagca
     1561 gtctaaagaa tggtacgcat gcttgcatgg acacgttcct gagacgctgg atgtgaaatg
     1621 ccgcacacga cactcagaaa ccacaaccag tgtgtctgct gctctgtcct ctcttggggc
     1681 gactgctgtc ttcctgtgat gaggttaagg agcccttgga agaagtgctg ggtggggagg
     1741 gtcttctgag ccggtgtggg gagctgctcc tggctgccct aggctgaact cattgccatc
     1801 ttggatgata ggtccctgta caggacactc gtgcttggta aggaaaccgg tgtttttcta
     1861 agagttacag ttgaattatc agtatattgc ttttttcctt gttaaaccca cagagatgtt
     1921 tataggcgca gaaacctcag tcatgtatgt acacatttgt gttgtttaaa atgattatat
     1981 gatcgttttc agcaaagata acaatgttat caaaaagcct ttgtctatta tgtggaactt
     2041 gtaaaggaga aataaaatac caatcagagc aactcca
//
