LOCUS       NM_001105921             728 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus RNA polymerase II subunit J (Polr2j), mRNA.
ACCESSION   NM_001105921 XM_001077131 XM_213753
VERSION     NM_001105921.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Knutson BA and Hahn S.
  TITLE     TFIIB-related factors in RNA polymerase I transcription
  JOURNAL   Biochim Biophys Acta 1829 (3-4), 265-273 (2013)
   PUBMED   22960599
  REMARK    Review article
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Corbi N, Bruno T, De Angelis R, Di Padova M, Libri V, Di Certo MG,
            Spinardi L, Floridi A, Fanciulli M and Passananti C.
  TITLE     RNA polymerase II subunit 3 is retained in the cytoplasm by its
            interaction with HCR, the psoriasis vulgaris candidate gene product
  JOURNAL   J Cell Sci 118 (Pt 18), 4253-4260 (2005)
   PUBMED   16141233
REFERENCE   3  (bases 1 to 728)
  AUTHORS   Fanciulli M, Bruno T, Di Padova M, De Angelis R, Iezzi S, Iacobini
            C, Floridi A and Passananti C.
  TITLE     Identification of a novel partner of RNA polymerase II subunit 11,
            Che-1, which interacts with and affects the growth suppression
            function of Rb
  JOURNAL   FASEB J 14 (7), 904-912 (2000)
   PUBMED   10783144
REFERENCE   4  (bases 1 to 728)
  AUTHORS   Kershnar E, Wu SY and Chiang CM.
  TITLE     Immunoaffinity purification and functional characterization of
            human transcription factor IIH and RNA polymerase II from clonal
            cell lines that conditionally express epitope-tagged subunits of
            the multiprotein complexes
  JOURNAL   J Biol Chem 273 (51), 34444-34453 (1998)
   PUBMED   9852112
REFERENCE   5  (bases 1 to 728)
  AUTHORS   Nishi Y, Yamamoto K, Yao Y, Yamamoto M, Nogi Y, Matsuo H and
            Muramatsu M.
  TITLE     Isolation and characterization of cDNA encoding mouse RNA
            polymerase II subunit RPB14
  JOURNAL   Gene 187 (2), 165-170 (1997)
   PUBMED   9099876
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473973.1.
            
            On or before Oct 3, 2007 this sequence version replaced
            XM_213753.3, XM_001077131.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AW919016.1, FM080184.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..728
                     /gene="Polr2j"
                     /note="RNA polymerase II subunit J"
                     /db_xref="GeneID:288588"
                     /db_xref="RGD:1310198"
     exon            1..105
                     /gene="Polr2j"
                     /inference="alignment:Splign:2.1.0"
     CDS             53..406
                     /gene="Polr2j"
                     /EC_number="2.7.7.6"
                     /note="polymerase (RNA) II (DNA directed) polypeptide J,
                     13.3kDa; polymerase (RNA) II subunit J"
                     /codon_start=1
                     /product="DNA-directed RNA polymerase II subunit RPB11-a"
                     /protein_id="NP_001099391.1"
                     /db_xref="GeneID:288588"
                     /db_xref="RGD:1310198"
                     /translation="MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGN
                     IIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE
                     ERFRVAIKDKQEGIE"
     exon            106..195
                     /gene="Polr2j"
                     /inference="alignment:Splign:2.1.0"
     exon            196..370
                     /gene="Polr2j"
                     /inference="alignment:Splign:2.1.0"
     exon            371..728
                     /gene="Polr2j"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcggaagg cggctgcggg ttggtgtctg ggagtgagag cgccttgcta ggatgaacgc
       61 ccctccggcc ttcgagtcgt tcttgctctt cgagggcgag aagaaaatca ccattaacaa
      121 ggacaccaag gtgcccaacg cttgcttgtt caccatcaac aaagaagacc acactctggg
      181 gaacatcatt aaatcgcagc tgttgaagga cccgcaggtg ctgtttgccg gctacaaagt
      241 ccctcacccc ttggagcaca agatcatcat tcgtgtgcag accaccccag actacagccc
      301 ccaggaggct ttcaccaatg ccatcacaga cctcatcagt gagctctccc tcctggagga
      361 gcgattccgg gtggccatca aggacaagca agaaggaatt gagtagcagc tgaaagaagc
      421 tcagtggctg taaggctggt gcgtgtatct gcccttctcc gtccaccacg atggcgacag
      481 ccactctcag ctctccagct gggcacagga cactgtccca ttctgtacat agactgttat
      541 tttcctaata aagtacagca aaagaggggc tgtgcggcat gtggcctgtc actgagaccc
      601 aaaccacagg ctgggcagaa cctgggactg ctgggcctgc ctgagttaag caaggtagga
      661 gccccagtgg agcctgtgtg actgcactca cttccgacag tagaatttaa taaaaaatac
      721 tcactggt
//
