LOCUS       NM_031335                470 bp    mRNA    linear   ROD 02-APR-2024
DEFINITION  Rattus norvegicus RNA polymerase II, I and III subunit F (Polr2f),
            mRNA.
ACCESSION   NM_031335
VERSION     NM_031335.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Knutson,B.A. and Hahn,S.
  TITLE     TFIIB-related factors in RNA polymerase I transcription
  JOURNAL   Biochim Biophys Acta 1829 (3-4), 265-273 (2013)
   PUBMED   22960599
  REMARK    Review article
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Vannini,A. and Cramer,P.
  TITLE     Conservation between the RNA polymerase I, II, and III
            transcription initiation machineries
  JOURNAL   Mol Cell 45 (4), 439-446 (2012)
   PUBMED   22365827
  REMARK    Review article
REFERENCE   3  (bases 1 to 470)
  AUTHORS   Schneider,D.A.
  TITLE     RNA polymerase I activity is regulated at multiple steps in the
            transcription cycle: recent insights into factors that influence
            transcription elongation
  JOURNAL   Gene 493 (2), 176-184 (2012)
   PUBMED   21893173
  REMARK    Review article
REFERENCE   4  (bases 1 to 470)
  AUTHORS   Dumay-Odelot,H., Durrieu-Gaillard,S., Da Silva,D., Roeder,R.G. and
            Teichmann,M.
  TITLE     Cell growth- and differentiation-dependent regulation of RNA
            polymerase III transcription
  JOURNAL   Cell Cycle 9 (18), 3687-3699 (2010)
   PUBMED   20890107
  REMARK    Review article
REFERENCE   5  (bases 1 to 470)
  AUTHORS   Hu,P., Wu,S., Sun,Y., Yuan,C.C., Kobayashi,R., Myers,M.P. and
            Hernandez,N.
  TITLE     Characterization of human RNA polymerase III identifies orthologues
            for Saccharomyces cerevisiae RNA polymerase III subunits
  JOURNAL   Mol Cell Biol 22 (22), 8044-8055 (2002)
   PUBMED   12391170
REFERENCE   6  (bases 1 to 470)
  AUTHORS   Kayukawa,K., Makino,Y., Yogosawa,S. and Tamura,T.
  TITLE     A serine residue in the N-terminal acidic region of rat RPB6, one
            of the common subunits of RNA polymerases, is exclusively
            phosphorylated by casein kinase II in vitro
  JOURNAL   Gene 234 (1), 139-147 (1999)
   PUBMED   10393248
REFERENCE   7  (bases 1 to 470)
  AUTHORS   Kershnar,E., Wu,S.Y. and Chiang,C.M.
  TITLE     Immunoaffinity purification and functional characterization of
            human transcription factor IIH and RNA polymerase II from clonal
            cell lines that conditionally express epitope-tagged subunits of
            the multiprotein complexes
  JOURNAL   J Biol Chem 273 (51), 34444-34453 (1998)
   PUBMED   9852112
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AB017711.1.
            
            On Jun 10, 2007 this sequence version replaced NM_031335.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB017711.1, CA509743.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..470
                     /gene="Polr2f"
                     /note="RNA polymerase II, I and III subunit F"
                     /db_xref="GeneID:83503"
                     /db_xref="RGD:708567"
     exon            1..65
                     /gene="Polr2f"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..429
                     /gene="Polr2f"
                     /EC_number="2.7.7.6"
                     /note="DNA-directed RNA polymerase II subunit F; RNA
                     polymerases I, II, and III subunit ABC2; RPB6 homolog;
                     polymerase (RNA) II subunit F; polymerase (RNA) II (DNA
                     directed) polypeptide F"
                     /codon_start=1
                     /product="DNA-directed RNA polymerases I, II, and III
                     subunit RPABC2"
                     /protein_id="NP_112625.1"
                     /db_xref="GeneID:83503"
                     /db_xref="RGD:708567"
                     /translation="MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGER
                     PQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKI
                     PIIIRRYLPDGSYEDWGVDELIISD"
     exon            66..135
                     /gene="Polr2f"
                     /inference="alignment:Splign:2.1.0"
     exon            136..266
                     /gene="Polr2f"
                     /inference="alignment:Splign:2.1.0"
     exon            267..338
                     /gene="Polr2f"
                     /inference="alignment:Splign:2.1.0"
     exon            339..470
                     /gene="Polr2f"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tttctctgct ctgcgacccg gaccggccag taaggagaag gtatcatgtc agacaacgaa
       61 gacaatttcg atggcgatga ctttgatgac gtggaggagg acgaagggct tgacgacttg
      121 gaaaatgctg aggaggaggg tcaggaaaat gttgagattc tcccatctgg tgaacgaccg
      181 caggccaacc agaagcgtat caccactcca tacatgacca agtacgagcg agcccgagtg
      241 ctgggcaccc gggctctcca gattgcgatg tgtgccccag taatggtgga gctggagggg
      301 gagacagacc ctttgctcat cgccatgaag gaactcaagg cccggaagat ccccatcatc
      361 attcgccgtt acctgccaga tggaagctat gaggattggg gcgtggatga gctcatcatc
      421 agcgactgag cagagctgtc aggctgtgcc aggcaccatc tctatgccca
//
