LOCUS       NM_001108707            3557 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus RNA polymerase I subunit F (Polr1f), mRNA.
ACCESSION   NM_001108707 XM_001076417 XM_343050
VERSION     NM_001108707.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3557)
  AUTHORS   Vannini A and Cramer P.
  TITLE     Conservation between the RNA polymerase I, II, and III
            transcription initiation machineries
  JOURNAL   Mol Cell 45 (4), 439-446 (2012)
   PUBMED   22365827
  REMARK    Review article
REFERENCE   2  (bases 1 to 3557)
  AUTHORS   Schneider DA.
  TITLE     RNA polymerase I activity is regulated at multiple steps in the
            transcription cycle: recent insights into factors that influence
            transcription elongation
  JOURNAL   Gene 493 (2), 176-184 (2012)
   PUBMED   21893173
  REMARK    Review article
REFERENCE   3  (bases 1 to 3557)
  AUTHORS   Tarantino C, Paolella G, Cozzuto L, Minopoli G, Pastore L, Parisi S
            and Russo T.
  TITLE     miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic
            stem cells
  JOURNAL   FASEB J 24 (9), 3255-3263 (2010)
   PUBMED   20439489
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473947.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_343050.3, XM_001076417.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ234148.1, FQ230315.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3557
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..3557
                     /gene="Polr1f"
                     /gene_synonym="Twistnb"
                     /note="RNA polymerase I subunit F"
                     /db_xref="GeneID:362728"
                     /db_xref="RGD:1307824"
     exon            1..354
                     /gene="Polr1f"
                     /gene_synonym="Twistnb"
                     /inference="alignment:Splign:2.1.0"
     CDS             101..1066
                     /gene="Polr1f"
                     /gene_synonym="Twistnb"
                     /note="TWIST neighbor"
                     /codon_start=1
                     /product="DNA-directed RNA polymerase I subunit RPA43"
                     /protein_id="NP_001102177.1"
                     /db_xref="GeneID:362728"
                     /db_xref="RGD:1307824"
                     /translation="MAAGSVESQRPKAASERPVAGQAGILPCLELPSYAAACALVSSR
                     YSCLVAAPHRRHIALSPRYLSRKRTGIREQLDAELLRYSESLLGVPIAYDNIRVVGEL
                     GDIYDDQGHIHLNIEADFVIFCPKPGQKLMGTVNKVSSSHIGCLVHGCFNASIPKPEQ
                     MSYEEWQTLEINVGDELEFDVFRLDSDSAGVFCIRGKLNTTSLQHKGSVVSEDVEETV
                     IEEVVEKIPKKKKKKDKDREVCATVESVTEVADVTDAAAEDEAGLPCSDDVNDFFEEE
                     PKKKKKKKKRHQEDQDPIFQASDSSGYQSDHKKKKKKRKHSEEAN"
     exon            355..496
                     /gene="Polr1f"
                     /gene_synonym="Twistnb"
                     /inference="alignment:Splign:2.1.0"
     exon            497..705
                     /gene="Polr1f"
                     /gene_synonym="Twistnb"
                     /inference="alignment:Splign:2.1.0"
     exon            706..3557
                     /gene="Polr1f"
                     /gene_synonym="Twistnb"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcgcggtcg gtcgcttttt gatgatgtaa gccaagcgtc ggaggcgagc gggaatgttt
       61 gcgtcattcg tgcgagcccc aaagcatcct gacaagccgc atggctgcgg gctctgtgga
      121 gtcgcagcgg cccaaggcgg cctccgagag gccggtggcg ggtcaggccg ggattctgcc
      181 ttgcctggaa ctaccgagct atgccgcggc gtgtgcgctg gtaagcagcc gctattcctg
      241 cttggtggcc gccccgcacc gcaggcacat cgccttgtcg ccccgctacc tgagcaggaa
      301 gcgcacgggc atccgcgagc agctggacgc cgaactcctg cgctactccg agagcctttt
      361 aggtgttccc attgcatatg ataacatcag agttgtgggt gaactgggag atatttatga
      421 tgatcaagga cacattcatc ttaacattga agccgatttt gttattttct gccctaaacc
      481 agggcagaaa ctgatgggta cagttaataa agtgtcttct agccatattg gctgtttagt
      541 acatggatgt tttaatgctt ctatccctaa acctgagcag atgtcatatg aggagtggca
      601 aacattggag ataaatgtag gggatgaact ggaatttgat gtgtttcgct tagactcaga
      661 ttctgctgga gtattctgca ttcgaggaaa actaaatacc acaagtttgc agcataaggg
      721 ctctgtagtt tctgaagatg tagaagaaac tgtcattgaa gaggttgttg aaaaaattcc
      781 aaagaagaag aagaagaaag acaaagacag agaagtctgt gcaacagtgg aaagtgttac
      841 agaggtagca gatgttacag atgctgctgc agaggacgaa gcaggcctgc cgtgtagtga
      901 tgatgtcaat gacttctttg aggaagagcc aaagaagaag aaaaagaaga agaaaaggca
      961 ccaggaagat caggacccca ttttccaagc cagtgactcc agtggctacc aaagtgacca
     1021 taaaaagaaa aagaagaaaa gaaaacacag tgaagaggct aactgagtca cctaagaaga
     1081 gacagtaatt gtcttttcta ttgttaacat attcagatat acaggtgaat agattttttg
     1141 aatggtagga aatgctgata ggaaattcac aaacaaatac ttgattggag ggttttgtac
     1201 taaaatcata caactgatta tataaatttt ggataatacc agtattatta tagtattatt
     1261 ttattacagt aaaggggaaa tgttaacaaa tgtttcttac cttgactcat attgttaatg
     1321 ttctacgtaa aattttacat tctcaacatc tgccaaagaa ctttatgctt tcaatttttt
     1381 tctgataata aatgttgtct ttagccagaa catttttttt aaaaagcaca atacatttac
     1441 taagtttaaa ttttccttaa acagtatttc tattttattt aaaatgtata cctaaggaag
     1501 attatctaga actcttacat accctgtgac tgtctgttga atgtgtggtg ggcggaaaac
     1561 tcattgtctc tcccagaggg tgtgtgtaca tgtgttcttg aattccgaga ctgttagggg
     1621 aagggctgtt aatttctact ttgtgtttca gtagtcttta ttttgttata tagatcatga
     1681 gcaaggtgaa gatgggataa atgtggttct tgctagttga aaatctccag taagctttta
     1741 atgattaggg gtgttctaga cttgtttgag gaggagctcc accgtcatta ctgctttcac
     1801 tgataaatgt gggatgtgtt atgcctaacc agaaggttat aatgaagatg agttggttga
     1861 ggttcataat caacccatag ccaggcactt aatagttgta atgtgtttta ttgaggccaa
     1921 aggatataaa aatcaagtta atgttcattt ctctgtgaag caaaatggga gaaacacttg
     1981 tgtgcacaca gcctaagtga ggaaataaaa cagtaattgt aaataccatg aagaaaacat
     2041 tgatctcctt agttagtatc tggaaatata cgggcgtagg gttgaccttc cgtgtcagtc
     2101 attgctgttg tcactgactg gcagacatag tgtgagcatc aatttactat ttgataagga
     2161 gtaacttttg gcaaccatgt ttcctgattt aatgtatggt atatagagca taaagaatgc
     2221 agcaatttaa tgtgtacagg tagatctgac caacagagga aaggtacaaa ccaacatctt
     2281 tcactcagga tacttgaaaa tttttatgtg gctttcaggt cccttcttaa actgtgacta
     2341 ttccaaatta acatgccttg tctcagtaca aaatatgaga ttttaaatta aagatatttt
     2401 aagaaataca aagaatactg caatacagtt gtctttccct ccttttacct catccctcct
     2461 gttcccatac ctacccactc ccgcacccac tctccttcct ccatccatcc ttgatgtcta
     2521 ttaaaaaatg gagtacagac ctagacagaa ttcttggcag gaatcgccag tggtggagaa
     2581 gcacttaaag aaatgctcaa cacccttagt catcagggaa ttgtaaatca gaacaactct
     2641 gaaattctgt cttacaccta tcaaaatggc taagatatta aaaaaaacaa aacaaaacaa
     2701 aaaacctcaa gcaacagctc gtgctaacga ggatgtggat gtggatcaag gggaacaccc
     2761 tggtgggggt ccaaacttcc aactgctttg gaagtaactt tggtgttttc ttagaaaact
     2821 gggaatagat ctacctcaag acacagctct gggacatata cccaaaagaa ccactaccat
     2881 atcacaagac atttgctcaa ctatgttcaa agcagctatt cataatagcc ataaactgga
     2941 aacaacccac atgtccttca actaaagaat gcataaagaa aatatggttc atttacacaa
     3001 tggaatagta ctcagctatt gaaaacaatg acatcattaa atttgcaaat ggatggaact
     3061 agaaaagatc ctgaacccag aaagacaaac agtctgtatt cacttgtatg tggattttag
     3121 tacaggataa ctgctataaa ccacagaccc aaagatacta agcatggaag acccacgggg
     3181 gacacgctca tatctcattg agaaggggaa attgaaaatt taactttttg cttaacactt
     3241 ttgctaagta aaatattaat tttatcctgt ttccagttta ttttttctca gtggttaagt
     3301 aagatcatag atgaaactca ttacattact tcagacaatg ctcttcaaat gaatttgtaa
     3361 attgaaaggg attgtaatgt ttgttttgta aggatttgat gtaacatatc tagaaaatgt
     3421 tcaataaatc cttcatattt taggagttga atttgtgatt atatttagca cagtatggta
     3481 agtcacatga ttcttgcctt ccatgaacac caaaacaaca tgttaaattt atctattgat
     3541 aaaaaaatag ataagca
//
