LOCUS       XM_039092836            3452 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DNA polymerase nu (Poln), transcript
            variant X2, mRNA.
ACCESSION   XM_039092836
VERSION     XM_039092836.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3452
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3452
                     /gene="Poln"
                     /note="DNA polymerase nu; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 1 Protein, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102555079"
                     /db_xref="RGD:7675413"
     CDS             680..3310
                     /gene="Poln"
                     /codon_start=1
                     /product="DNA polymerase nu isoform X1"
                     /protein_id="XP_038948764.1"
                     /db_xref="GeneID:102555079"
                     /db_xref="RGD:7675413"
                     /translation="MKMENYEACVGFDLCETPLSTVAQKIMSAMRSGDLMASRNEGER
                     TKTSEVTKKPSVHFSVLAEHEKTQPLETKNPKSLINQTPRGSVELSSQPSITKLSAGQ
                     VQNSISSSGLSSYLIPQCDQEASVLQNREHKRKHFLKENIGKEDKDSLNLKRKYITCS
                     NSPEKASKHTALGKETDGTESWQNSEDTRALGKQLCDVRYLGDLAKVQLMDVLKQAAA
                     LVVTLMYKDGSTQLSAKQALTCPVKGIVVLLKSHVGSSPLILPAHGGALGKDFTSTDH
                     CIYIHTEQSPFWDPKQEAHSLFVRNILFWTLRCKCPVVCFNAKDFVRTVLQLYGEDGS
                     WKHVAGFVGLDPRVAAWLIDPSDTAPSFEDLVAKHLEKSIIVKPSSTFNDASINIVSQ
                     NVCVNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKISIDKEEMERT
                     SALLGAHLKKLEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQ
                     LSTSEAMLNSLQDLHPLPKIILEYRQVHKIKSTFIDGLLAYMKKGSISSTWNQTGTVT
                     GRLSAKHPNIQGISKHPIQISRPRNFKGKEEETATISPRTLFVSSEGYTFLAADFSQI
                     ELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVV
                     YGAGKERLAACLGVTVLEATHFLEQFLQKYKKIKDFAQTVIGQCHSAGYVASILGRRR
                     PLPRICAQNQQLRAQAERQAVNFVVQGSAADLCKLAMIRIFAAVATSPTLTASSCQKD
                     HGVLATGTDLGTAAAGAPKGELEYWPLMGTPDPTAGDPGLSLTHLPATVQQPVRSLLP
                     TPIKGFFFHPAYLYPWATVE"
ORIGIN      
        1 gccttgggag ttaagtgtgt ttttctaaat aaccattgta aaagattcaa tagccatcaa
       61 tcctaccctg cgagaggcct gatagggact gggctactga cctggttatt ggcaccacgt
      121 tgggtcaccc taccaggggt ggtggtggtg gtaagagctg ttgggagaag gaggggtctg
      181 ctcggcctca agtttccggt cccccagtgg tgtcaagact gccagccata cttaggacag
      241 gaggcctaac tgaactagac aggcctgaat gcccagcagc cggaagatac tcagacttca
      301 actctggagc ggggggcggg gtgcggcgga gcgagcgcag agcctctagt gagaaaacca
      361 atcctcttga gcctagcggg aaagatggca ggctaggggc ggggttaagg ggcggtgcat
      421 ctggcaggag aaccagtcac tttgccctgg cttcttggaa ttggttggtc agcggttact
      481 cctcggtctc ccggacacct cgccgcctgc gcagacacta cggatggtgt aatctgcgcg
      541 tgcgcgctca ggtactcccg tgaggcattg cggggcgcgc ggttggaggc tggaggagag
      601 cagtggcccg ggcgccctga ggctagttat atctatagat cgagtcgttt gaacctgatg
      661 aacgcagatt gagggcttta tgaaaatgga aaattatgag gcatgtgtag gttttgatct
      721 ctgtgagaca cccctctcca ctgttgctca gaagattatg tctgctatgc gctcaggtga
      781 tttaatggct tctaggaatg agggagagag gacaaagact tcagaagtga caaagaaacc
      841 cagtgttcat ttctcagtat tagctgagca tgaaaagact caaccactag aaacaaagaa
      901 ccccaagtca ttaataaacc agacaccaag aggatctgtt gagctctctt ctcaaccctc
      961 cattaccaag ctctctgctg gtcaagtaca gaacagcatt agctcatcag gcctttccag
     1021 ttatttaatt ccacagtgtg atcaggaagc ttcagtttta cagaacagag agcataagag
     1081 aaagcatttc ctaaaggaaa atataggcaa agaagataag gacagcttga atcttaaaag
     1141 aaaatatatt acatgtagta attccccaga aaaagcaagt aaacacacag cgctgggaaa
     1201 agagactgat gggaccgaat cctggcaaaa ttccgaggac acaagagctt tggggaaaca
     1261 gctgtgtgat gttagatatt tgggtgattt ggcaaaagtc cagctgatgg atgttctcaa
     1321 gcaggcagca gccctggtgg tgacattgat gtacaaggac ggttccacac agctcagtgc
     1381 caagcaggct ttaacttgtc ctgttaaagg aattgtggtg ttactaaaaa gccatgtagg
     1441 cagcagccct ctgattctcc cagcccatgg tggtgctctg ggcaaggatt tcacatccac
     1501 agatcactgt atctacatac ataccgagca atcccctttc tgggacccaa agcaagaagc
     1561 acatagtcta ttcgtcagga acatactgtt ttggacactt aggtgtaaat gccccgttgt
     1621 ttgttttaat gccaaggact ttgtgagaac agtactgcag ctttatggtg aggatggcag
     1681 ttggaagcat gttgctggtt ttgtaggact agatcccaga gttgctgcat ggctcataga
     1741 tcccagtgac actgcacctt catttgaaga tttagtagca aaacacctag aaaagtccat
     1801 catagtcaaa ccaagcagca cattcaatga tgcgtcaata aatattgtga gtcagaacgt
     1861 atgtgtgaac ctgaagatac tctacgacct tacaatggat ctttgttcta agttgaaggc
     1921 ttatggctta tggcagctat tttgtacttt ggagcttcca ttgataccaa ttttggcagt
     1981 gatggaaaac cacaagattt caattgacaa agaagaaatg gagaggacat cggcactcct
     2041 tggggctcac ctcaagaaat tggagcaaga agcccatttt gttgcaggag aacagtttct
     2101 tataatgagt aataatcaac ttcgtgagat cctctttggc aagttgaagc tgcacctgtt
     2161 gagtcagagg aaacatcttc ccagaactgg gctgcagaac cagctgtcta catcagaagc
     2221 catgttaaat tctctacaag accttcaccc attacccaag ataattctgg aatatagaca
     2281 ggttcacaag atcaagtcaa cttttataga tggattacta gcttatatga aaaagggctc
     2341 catctcttct acatggaatc agactggaac tgtgacaggg agactttcag ccaagcatcc
     2401 taatatccag ggtatctcca agcacccaat ccagatttct aggcctcgga attttaaagg
     2461 taaagaagag gagactgcca ccatctctcc aagaactctg tttgtgtcct ctgaaggcta
     2521 caccttcttg gcagcagact tttcacagat tgaattgcgc attcttgcac atttatctgg
     2581 ggatccagag cttttgaagt tattccagga atctgaaaga gatgatgtat tttcgaccct
     2641 gacttcacag tggaaggaca ttcccataga acgtgtgaca cacatggaca gagaacagac
     2701 caagaaagtg gtgtactccg tggtctatgg agccgggaaa gaacggcttg ctgcttgcct
     2761 tggagtcact gttttggaag caacccactt tttggagcaa tttctacaga agtacaagaa
     2821 aatcaaggac tttgcccaga cagttattgg ccagtgtcac agtgcaggct atgtggcatc
     2881 catcttgggt agaaggaggc ctctcccgag gatctgtgca cagaaccagc agcttcgggc
     2941 acaagcagag cgacaggcag taaactttgt ggtacaaggc tcagccgcag acctctgtaa
     3001 gctagccatg attcgcatct ttgctgcagt agccacatcc ccgaccctga cagccagctc
     3061 ttgtcagaag gatcatggag tccttgcaac aggtacagac cttggaactg cagctgcagg
     3121 tgcccctaaa ggtgaacttg agtattggcc gctcatgggg acacctgacc ccactgcagg
     3181 agaccctggg ctcagcctga cccatctccc agcaacagtc cagcaaccag tgaggtccct
     3241 gcttcctacc cccataaagg gctttttctt tcatcctgcg tatctgtatc cctgggcaac
     3301 agtggaatga gagagtttgt ttccaccaat ccatcctaca gccttttccc atgtcacaag
     3361 cttgcactct atgagggcta aactatacag gctacattaa ccctttgtgg aacaactagg
     3421 gtacctgaag taaatgccta atgagaagct ga
//
