LOCUS       NM_001130506            3485 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus DNA polymerase delta interacting protein 3
            (Poldip3), mRNA.
ACCESSION   NM_001130506 XM_001077668 XM_235521
VERSION     NM_001130506.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3485)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 3485)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 3485)
  AUTHORS   Folco EG, Lee CS, Dufu K, Yamazaki T and Reed R.
  TITLE     The proteins PDIP3 and ZC11A associate with the human TREX complex
            in an ATP-dependent manner and function in mRNA export
  JOURNAL   PLoS One 7 (8), e43804 (2012)
   PUBMED   22928037
REFERENCE   4  (bases 1 to 3485)
  AUTHORS   Dufu K, Livingstone MJ, Seebacher J, Gygi SP, Wilson SA and Reed R.
  TITLE     ATP is required for interactions between UAP56 and two conserved
            mRNA export proteins, Aly and CIP29, to assemble the TREX complex
  JOURNAL   Genes Dev 24 (18), 2043-2053 (2010)
   PUBMED   20844015
REFERENCE   5  (bases 1 to 3485)
  AUTHORS   Ma XM, Yoon SO, Richardson CJ, Julich K and Blenis J.
  TITLE     SKAR links pre-mRNA splicing to mTOR/S6K1-mediated enhanced
            translation efficiency of spliced mRNAs
  JOURNAL   Cell 133 (2), 303-313 (2008)
   PUBMED   18423201
REFERENCE   6  (bases 1 to 3485)
  AUTHORS   Richardson CJ, Broenstrup M, Fingar DC, Julich K, Ballif BA, Gygi S
            and Blenis J.
  TITLE     SKAR is a specific target of S6 kinase 1 in cell growth control
  JOURNAL   Curr Biol 14 (17), 1540-1549 (2004)
   PUBMED   15341740
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473950.2.
            
            On or before Jul 27, 2008 this sequence version replaced
            XM_001077668.1, XM_235521.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMN16676810 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3485
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..3485
                     /gene="Poldip3"
                     /note="DNA polymerase delta interacting protein 3"
                     /db_xref="GeneID:315170"
                     /db_xref="RGD:1311073"
     exon            1..154
                     /gene="Poldip3"
                     /inference="alignment:Splign:2.1.0"
     CDS             96..1358
                     /gene="Poldip3"
                     /note="polymerase (DNA-directed), delta interacting
                     protein 3; polymerase (DNA) delta interacting protein 3"
                     /codon_start=1
                     /product="polymerase delta-interacting protein 3"
                     /protein_id="NP_001123978.1"
                     /db_xref="GeneID:315170"
                     /db_xref="RGD:1311073"
                     /translation="MADISLDELIRKRGTATKGRLSVRPGIGGVRSRVGIQHSLLSQP
                     ARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRK
                     QQNTVPQKPRQVADAREKISLKRRSPATFTSPPIGTVTPALKLTKTIQVPQQKAMVPL
                     HAHPAGMRINVVNNHQAKQNLYDLDEDDDIVAPVPTKQMKFAAPGSLVHHTTGMSSPK
                     LSMSKTLPLTKVVQNDAYTAPVLPSSVRTKALTNMSRTLVNKEELPKELPPAEPVLSP
                     LEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKY
                     NNRCLDGQPMKCNLHMNGNVITSDQPILLRLSDSPSVKKESELPRRGNPVSSNPPAEV
                     DPDTILRALFKSSGASVTTQPTEFKIKL"
     exon            155..545
                     /gene="Poldip3"
                     /inference="alignment:Splign:2.1.0"
     exon            546..632
                     /gene="Poldip3"
                     /inference="alignment:Splign:2.1.0"
     exon            633..728
                     /gene="Poldip3"
                     /inference="alignment:Splign:2.1.0"
     exon            729..908
                     /gene="Poldip3"
                     /inference="alignment:Splign:2.1.0"
     exon            909..986
                     /gene="Poldip3"
                     /inference="alignment:Splign:2.1.0"
     exon            987..1116
                     /gene="Poldip3"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1183
                     /gene="Poldip3"
                     /inference="alignment:Splign:2.1.0"
     exon            1184..3485
                     /gene="Poldip3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgttccggtg tcggaagctg ctcataactc cggccgaggg gcgggctcgc tgctgacggc
       61 ctttcatccg ctctccgcta ccttggcggc gcaagatggc cgatatctcg ctggacgagc
      121 tcatccggaa gcgcggaacg gcgaccaagg gacggctcag tgtcagacca ggaattggag
      181 gcgtccgatc tcgagttggg atccagcata gtcttcttag ccaaccagct cgcacagcca
      241 ccttccagca gagatttgac gcccggcaga agattggcct ctcagatgct cggctcaagc
      301 tgggtgtcaa agatgcccgg gaaaagcttt tgcagaaaga tgcccggttt cggatcaaag
      361 gaaaagtaca ggatgccaga gagatgctga actcacgaaa gcagcagaac acggtgcccc
      421 agaagccccg ccaggtggct gatgcccggg agaagatcag cttgaagagg agatcccctg
      481 ctacattcac aagcccgccc attgggactg tgacccccgc tctgaaactc accaaaacta
      541 ttcaggttcc acagcaaaag gccatggtgc cacttcatgc ccatcctgct ggaatgagga
      601 tcaatgttgt caataaccac caggccaaac agaatttgta tgacctggat gaagatgatg
      661 acattgtagc acccgttcct actaagcaga tgaagtttgc agcccctggc agccttgttc
      721 accacacgac tggaatgagt agtcccaagc tctccatgtc caagaccctc cctctcacaa
      781 aagtggtcca aaacgatgcc tacaccgctc ctgttctccc ctcctctgtt cgaaccaaag
      841 ccttgaccaa catgtcccgg acactggtga acaaggagga gcttcccaaa gagctgccac
      901 ctgccgagcc tgtgcttagc cccttggaag gcaccaagat gactgtgaat aatctgcacc
      961 ctcgagtcac agaggaggac atagttgagc ttttctgtgt gtgtggagct ctcaagcggg
     1021 ctcgactggt ccatcctggg gtagcagagg ttgtttttgt gaagaaggat gacgccatca
     1081 ctgcttataa gaagtacaac aaccgatgtc tggatgggca acctatgaag tgcaaccttc
     1141 acatgaatgg gaatgtcatc acctcagacc aacccatcct gctgcggttg agtgacagcc
     1201 cctcagtgaa aaaggaaagt gagctgccgc ggaggggcaa tcctgtctct tccaaccctc
     1261 ctgccgaagt ggaccctgac accattctca gagcactctt caagtcctcg ggggcctctg
     1321 tgaccacaca acccacagaa ttcaaaatta aactttgagg aggggattga ggcagtcaga
     1381 aacagggcag aggaggggtg gctctgtttc ccaaggcaaa gttgagacca acgggctggg
     1441 ccgtcggact gaagcccccg agcaagggac aaggtaccag ggagagcttc ttcgctggac
     1501 gggacccacc tttctgtgtt gttctacacc ttgcccttct gtgtgttacg tttctgtagt
     1561 aggtttcctc tttcctccat tcatcaccaa ggtaggctgt gtttgtcgtg tgcctcccct
     1621 atcctcggcc cctagctgat ttcttcccta gaaatggtgc actgtttccc tgggtggcct
     1681 tcttgtggcc ccatgggaca cagtgcagga gcatgttgga aagtgctttt tttttttttt
     1741 tttttttttt taaatgtttt gttctcaaga gttttcttgt tcagttgaag ttttcaaaca
     1801 aaacggaatg aatgggacct cctgccattc tgtgggcact cagtcagcca gggggctgca
     1861 tcaggtcact ggcttcttgt gttctcacca ctgtcatctc caggactgac tgctaatgtg
     1921 cagctctatg acgggcaggt agggcggctg tgttgcctgt tcttggctgc ctgtgctgtt
     1981 ttggacagtg tcccagagtt catggcccct tgttagtgtt gtgccaaagg ccttggttca
     2041 gttctttgag cttccgtatg ggagtaagga agggacctgt gcctattagc cctcttggtt
     2101 ctcacctgat agggcagcat caaagcctgg ctttggtgcc agtgccagct gcaagttggt
     2161 tgagcctttt tccaggttct accccaggct gcagcacaga gaacttgggg aagactgatt
     2221 gaatcaaagc cattggctgg ctctgactct gcttttctgg cttcggctat ctacagaaca
     2281 gcagtcaggg ttgcccaaag tgcagctgcc accagggcat tttctctgct agtgtaagtg
     2341 acccacattg atgaatggtc tgagtagagc caggctacaa agcaagctgg tgggttactg
     2401 ggtacagtgt actcctacat tgttagtgta ggacttaggc aggtgccgag tgtcaagtag
     2461 cagcattcca gagctggtca gtagtcccct gacagtggga acagaagatg ctaagctgtc
     2521 agagctggag caggattcta agggcgcaca tgatcagtag tgtgtgctgt aaagggacaa
     2581 gccgaggaag taaaggaagc tgaggcatgg tgacccattc aaggctagcc caggaaagag
     2641 aacttcaact aattattctt tcctgagttc catctgccca gctggaaggg tgttttgagt
     2701 cagaatcagc ccttcagctc tgaggttgcc cagcagagga atccaggaat gacatctggg
     2761 gtgtccacat ctaaagaagc ctccttctct taaacccttc taaatgggta caaacttaat
     2821 tcttctcaga aactggaaga cattcctcgg tgtttatccc ttcctggccc aagagaacac
     2881 ccccagacaa aagggcctca ctcctctgcc actgggaaca gttggcatgc tttttgcttt
     2941 gtatagagga gggatggctg aggcccttcc tggttcccct actctccttg agccaggcgt
     3001 gcagtgatgg tacactcaac tgagtcagcc tcaccctcct ggccatgtgg tactttgggg
     3061 agtggggcgt ttacccctcc tgcatttcag aatgtcatct tgggaaacag aaaagaagat
     3121 gggccaaccc tcatgtcccc tgctcccttc cattacttct ttgtgtcttg tttaggagag
     3181 aaaggcattg tgggatggag gggcttgtta ctttccattt ctcaataaat gtttgttatt
     3241 cctaactttg agctgtaacg tctttttttt attgctttta ttatatctat tgggtgcgtg
     3301 tgcatttcat gatccatgtg tggtagtcag gggtcaacct gagggaatcg ggagtccatt
     3361 ctctccttcc accatatggg ttctgtgatt ggaactcagt ttatcaggct caagagtaaa
     3421 cacctttacc tactgagcca tcttgttgac tctgggctgt tccccacaca cacctctatc
     3481 cctgt
//
