LOCUS       XM_017590895            6857 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pogo transposable element derived with
            ZNF domain (Pogz), transcript variant X3, mRNA.
ACCESSION   XM_017590895
VERSION     XM_017590895.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017590895.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017590895.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6857
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6857
                     /gene="Pogz"
                     /note="pogo transposable element derived with ZNF domain;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 38 ESTs, 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 28 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:310658"
                     /db_xref="RGD:1309980"
     CDS             637..4869
                     /gene="Pogz"
                     /codon_start=1
                     /product="pogo transposable element with ZNF domain
                     isoform X1"
                     /protein_id="XP_017446384.1"
                     /db_xref="GeneID:310658"
                     /db_xref="RGD:1309980"
                     /translation="MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTPVSV
                     SQQPVSAPVPIAAHASVAGHLSTSTTVSSSGAQNSDSTKKTLVTLIANNNAGNTLVQQ
                     GGQPLILTQNPTPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQGFPVRNV
                     RPVQNAMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMTPVRPGSTM
                     PVRPTTNTFTTVIPATLTIRSTVPQSQSQQTKSTPSTSTTPIATQPTALGQLAGQPPG
                     QPNQTSNPKLAPSFPSPPAVSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPSLGQSP
                     GPVVVSNNSSAQRTSGPESSMKVTSSIPVFDLQDGGRKICPRCNAQFRVTEALRGHMC
                     YCCPEMVEYQKKGKSLDAEPSVPSAAKPASPEKTAPVTSTPSSTPIPALSPPTKVPEP
                     SESAGDTVQTKLIMLVDDFYYGRDGGKAAQLTSFPKVATSFRCPHCTKRLKNNIRFMN
                     HMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAF
                     ESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCPYCLKV
                     FKNGNAFQQHYMRHQKRNVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPG
                     TKVTIRASRGQPRTVPVSSNDAPSGALQEAAPLTSADPLPVFLYPPVQRNVQKRAVRK
                     MSVMGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPRKSPKY
                     LALFKNFVSGIKLACTSCTFATSVGDAMAKHLVFNPSHRSSNILPRGLSWMSYSRLGQ
                     TPERVLDRSMKNTYLPPPLLPNKAATVKPVGATSAEPQELAGPVLQALPSPASTATPP
                     ATPTHPQPSALPPLATEGTECLNVNEQEEGSPVTQEPEPASGAGSGGSGVGKKEQLSV
                     KKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSFEAEEKLAE
                     WVLIQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHHLTPHARRAVAH
                     TLPKHVAENAGLFIEFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQT
                     VGTGEPWCDVVLAILADGTVLPTLVFFRGQANRLANVPDSILLEAKDSGYSDDEIMEL
                     WSTRVWKKHTACQHSKSMLVMDCHRTHLSEEVLALLSASSTLPAVVPAGCSSKIQPLD
                     VCIKRTVKNFLHKKWKEQAREMADAACDSDVLLQLVLVWLGEVLSVIGDSPDLVQRSF
                     LVASVLPGPDGNVNSPTRNADMQEELIASLEEQLKLNGEQSEEHSASAPRPRSSPEET
                     VEPESLHQLFEGESETESFYGFEEADLDLMEI"
ORIGIN      
        1 gccgtttctt ccctggtaga acataagttt cacatgtaca gggttttgtg ggtttgtttt
       61 tcaatatttt tatgttttaa ttttaaaaaa gaataatttc tatggtttta tttttaatga
      121 tatgtatgtg ggaggaggta tggagtgtgt ttgagtatag atgcctgtca ggccataaga
      181 gggcactgta tccattggag ttggaggaac aggcatttgt gagcagaagg atggagtgct
      241 gggaactgaa ctgtgaacca gaggagcaac agtagctctt gtctactgag gccgctctac
      301 agccccgggg accttattac tacattccta gcaccacaaa aagtgcctgg aacatgaaaa
      361 atgcgcagta aatattgcat gaaataatgg cacctcaaat gtcttcagta ggatgtgatt
      421 gtggttgttg tggccaacag aacatggtcc agtttgatga gctgtctttc tctggataaa
      481 agggagaagc tggcagttgg gagaatatgt acaaaagagc ccagacaaac ttgactagaa
      541 aagaaggccg gacaagggtt aggatgagcg atgacgtaga atactagcca gccaattgaa
      601 agagcacgag aaggggaggg cggaagtgac gagagtatgg cggacaccga cctttttatg
      661 gaatgtgagg aggaagaact ggagccatgg cagaaaatca gtgatgtcat tgaggactct
      721 gtagttgaag attacaattc agtggataaa actactcccg tttctgtgag ccagcagcca
      781 gtctcagctc cagtgcccat tgctgcccat gcttctgtgg ctgggcacct ctctacatcc
      841 actactgtta gtagcagtgg ggcacagaac agcgacagta caaagaagac tcttgttaca
      901 ctaattgcca acaacaatgc tggtaatact ttggtccagc aaggtggaca accactcatc
      961 ttgacccaaa atccaacacc gggtctggga acaatggtta ctcaaccagt attgagacct
     1021 gtccaggtca tgcagaatgc caatcatgtg actagctccc ctgtggcctc acaacctatc
     1081 ttcatcacta cccagggatt ccctgtaagg aatgttcgcc ctgtacagaa tgccatgaac
     1141 caggttggga tcgtgctgaa tgtacagcaa ggccaaacag tcagaccaat tacactggtc
     1201 ccagccccag gtacacagtt tgttaagccg acagttggcg tcccacaagt gttctctcag
     1261 atgacccccg tgaggccagg ctccacaatg cctgtgaggc ccaccaccaa cacctttacc
     1321 accgtcatcc cagctactct caccatccga agcactgtcc cacagtccca gtcccagcag
     1381 accaagtcca cccccagtac ctccactact cccattgcca cacagccaac cgcattgggg
     1441 cagctagctg gtcagcctcc aggccagccc aaccagacct cgaatcccaa actagctccc
     1501 tccttcccct ctccacctgc agtgagcatt gccagctttg tcactgtgaa gcgacctggg
     1561 gttacaggtg aaaatagcaa cgaagtggcc aagttggtga atactcttaa cactatccct
     1621 tccctgggcc agagtcctgg gccagtggtg gtgtccaaca acagttctgc tcaaagaacc
     1681 agtggacccg aatcttcaat gaaagtgacc tcttccatcc cagtgtttga cctccaggac
     1741 ggtggacgga aaatatgtcc acggtgtaat gctcagttcc gagttactga agctttgaga
     1801 ggtcacatgt gttactgctg ccctgaaatg gttgagtacc aaaagaaagg caagtccctc
     1861 gatgcggagc ccagtgtccc atcagcagca aagcctgcat cccctgagaa gacagcccca
     1921 gttacttcca caccctcctc tacaccaatt cctgctctct cacctcctac caaagtgcca
     1981 gagccaagtg agagtgcggg agacactgtc cagaccaagc ttattatgct tgtcgatgac
     2041 ttttactacg gacgggatgg gggcaaagca gcccagctaa ctagcttccc taaagttgcc
     2101 acgtctttcc gatgccctca ttgtactaag aggctaaaga acaacattcg attcatgaac
     2161 cacatgaagc accacgtaga acttgatcag cagaatggcg aggtggatgg tcatactatc
     2221 tgccaacact gttaccgcca gttctccacc cctttccagc tccagtgcca cttggaaaat
     2281 gttcatagtc cctatgaatc aactaccaag tgcaagatct gtgagtgggc ctttgaaagc
     2341 gagcccttgt ttctccagca tatgaaagac acccacaagc ctggagagat gccttatgtt
     2401 tgtcaggtgt gtcaatatcg ctcctccctc tactcagagg tagacgtcca ttttcggatg
     2461 atccatgaag acactcggca tttgctctgc ccgtattgcc taaaagtctt caaaaacggc
     2521 aatgccttcc agcagcacta catgaggcac cagaagagaa atgtttatca ctgcaacaaa
     2581 tgccggctgc agtttctctt tgccaaggac aaaattgaac acaagcttca gcaccataaa
     2641 accttccgta agcctaagca actggaaggc ttgaaaccag gcaccaaggt gacaatccgg
     2701 gcttccaggg ggcagccacg aactgttcct gtgtcttcaa atgatgcacc ttctggcgct
     2761 ttgcaggagg cagcaccact gacctccgct gaccccctac ctgtcttcct ttaccctccc
     2821 gtccaacgca atgtccagaa gagagctgtc aggaaaatga gcgtcatggg ccggcagacg
     2881 tgtctggagt gcagctttga gattccagat ttccctaacc atttccctac ctacgtgcac
     2941 tgttctctct gtcgctatag cacctgctgc tctcgagctt atgccaatca catgatcaac
     3001 aatcatgttc cacggaagag tcccaagtat ctggctttgt ttaaaaattt tgtaagtgga
     3061 atcaagctgg cctgtacttc gtgtaccttt gctacctccg tgggagatgc catggccaag
     3121 catttggtgt tcaacccctc ccacagatct agcaacatct taccacgggg gctcagttgg
     3181 atgtcttact cgaggcttgg ccagactcct gaacgagtgt tggaccggag catgaagaat
     3241 acgtatcttc cacctcctct cctccctaac aaagctgcca ctgtgaagcc tgtaggagcc
     3301 acctcagcag agcctcagga gctggcaggt cctgtgctcc aggcacttcc atcaccagcc
     3361 tcaactgcaa ccccaccagc aacccccact cacccacagc cctctgccct gccacccttg
     3421 gccacagagg ggactgagtg tctgaatgtc aatgaacagg aggagggaag ccctgtcacc
     3481 caggagcctg aaccagcatc aggtgctgga agtggtggca gtggggttgg caaaaaagag
     3541 cagctgtctg tgaagaagct tcgggtagtg ctgtttgccc tgtgctgcaa cacagagcag
     3601 gcggctgaac acttccgaaa cccccagcgg cgaattcgcc gttggcttcg acgctttcag
     3661 gcctctcagg gagagaattt agagggcaaa tatctcagct ttgaggcaga agaaaaactg
     3721 gctgaatggg tgctgatcca gagagagcag cagctccctg taaatgaaga gaccttgttt
     3781 cagaaggcca ccaaaatcgg acgctctttg gaagggggat ttaagatctc ctatgagtgg
     3841 gctgtgcgct ttatgctccg gcaccacctc actccccatg cccggcgagc tgtagcccac
     3901 acgttaccga agcatgtagc agaaaatgct ggactcttca ttgagtttgt gcagcggcag
     3961 attcacaacc aagacttacc tttgtctatg attgtggcta tcgatgagat ctctttgttt
     4021 ctggacacag aggtgctgag cagtgatgac cggaaggaga acgctctgca gacagtgggc
     4081 acaggggagc cttggtgtga cgtcgtgctg gctatcctag cagatggcac tgtcctcccc
     4141 accctggttt tcttccgagg tcaagcgaat cggcttgcta atgtgccaga ctctatatta
     4201 ctagaggcta aagacagtgg ctatagtgat gatgaaatca tggagctttg gtccacccgt
     4261 gtgtggaaga agcacacagc ttgtcagcac agcaaaagca tgctggtgat ggactgtcat
     4321 cgcactcact tgtcagaaga ggtgctggcc ctgctcagtg cctctagcac tttgcctgcg
     4381 gtggttcccg caggctgtag ctctaaaatc cagccactag acgtgtgcat caaacgaact
     4441 gttaagaact tcctgcacaa aaagtggaag gagcaggctc gggaaatggc agatgctgct
     4501 tgtgattctg atgtcttgct tcagctggtg ttggtctggc tgggtgaggt gctgagtgtc
     4561 attggggact ccccagacct agttcagcgg tccttccttg tggctagtgt tctgccaggc
     4621 cctgatggca acgttaactc acccacacgc aacgctgata tgcaggagga gctcattgcc
     4681 tccctcgagg agcagctaaa gctaaatgga gaacagtccg aggagcactc agcttctgcc
     4741 ccccgaccca ggtcatcgcc tgaagagaca gttgagcctg aaagccttca tcagcttttt
     4801 gagggagaaa gtgagacaga gtctttctat ggctttgagg aagctgacct agatctgatg
     4861 gagatttagg tgctgaggct atggaatcat tgaatcgggt aggaaagttg agggaggtta
     4921 gaggggctta gacaggaggg gtaccagtgg ggtacttggt ttataatttc aatttatgcc
     4981 accactcccg acattgactc ttcctgtgaa cttgtgggtt attatgaaca ccagtcagta
     5041 atgatcagtt ctgagccgag gagctggccc attggttact cctgctaaaa ccatgttttt
     5101 gtgacccttt tttcttcttt aatttaaatc actgtgtttg ctatttttcg gacaaaatct
     5161 aggaaaacaa tcctttgtgg acaaatatta agttgttttg tttccccctt tacctcaatt
     5221 gtatcatagt atttctgggt tttgtttgtt tactgtgtgg ccgatgtctt tgggcatgac
     5281 actataatca ttgttaacat gagaacgttg ctgcagatgg aaagaagagt atgtagctca
     5341 caagctggct tatttacaaa tgtggatacg tttttttcat tgtggtctta acacttttat
     5401 ataaaaatga aaatgaaaaa tgaatcccac tgaactcttt ccttctccat tcccctccct
     5461 cttcagaggt gttggtctcc tcagcagctc tagatataaa attgtggctt taaaaagtgc
     5521 atgaaccacc ttgaaacatc cagaatggat agatatttct gtcctcacca ccctccacca
     5581 aaatacaaca gaaacaatat ttttttgtac tcgtgaccct tgaccctttt cctgattttc
     5641 acaccattct tcactctgga caaaggagca catgtgtccc tagcaagcaa gagctgctga
     5701 gtgaggcgat gagtgttcag gtggaagcca ttcctagtct ctgtcttcag ccagccccct
     5761 gctgtagtcc ctgctctgtt gaactctgtt gtcctgtgaa gctcgtcccg acagcacgcc
     5821 tgctcatcac aggtccaact ggcatatgtt acatgttgac taaacagaca gactgctcga
     5881 actcctgctt acacgtggct ttcctgtccc tcatgttcag agaagaactg gatgtgaaaa
     5941 gcatagaggt gtgcacagag aaagacaaga atctttattt ttcactgcca acttcaagga
     6001 aaatttttct acagtttgca tgagggattt ttttttttta aagaaaatat gtactcgtgg
     6061 tgataaacca gaatgtactg tatcatagag gagaacaaaa caccaagtct acctttccca
     6121 cagccacatt gttcttgtca atcctgaggc gttcagtttc tcctgagagc caaggaggca
     6181 gcctgcacaa gcgtgtacgt ggttcatctt taaagtgtac ataagtggag catttactaa
     6241 aatgagagga aaggatttat aaacttttct atatgtcccc attgaatagg ctttcataga
     6301 ctgggagata ctcaaggcgt gcaggcctgg tggtacaggt gtgtggcatt tgtgaccacc
     6361 actcctctcc ctgcagtttt tgttatcttt aactcccagc atattataac acagtgaaca
     6421 ggactgatcc cagaagtttg gccagctcta ccatggcgtt ggagatctga actgagaacc
     6481 cacctggact tctgttccca gctttttgtg taatgccatt ttcttgatga cggactacac
     6541 ttcagagcca accttctgcc tttgagaaag ctggagaact gtaaatggtc acttgaatct
     6601 acacctaatc ctctttggtc gtctctgcag cagccacagc cttagcagag ctgggttcct
     6661 ggcctctgca cattgacttt ggatgggtaa tttttttttt ttttttttaa agatcatggt
     6721 aaccgtgaat cggctgggtt ttggcaagca agttgtcttt gtggactctg cctgcatggc
     6781 ttagtagtag aaggaaggtt ttttggtttt gtttttttat aattcagttt aatcaataaa
     6841 catgtattta ttgacaa
//
