LOCUS       XM_008761295            6489 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pogo transposable element derived with
            ZNF domain (Pogz), transcript variant X1, mRNA.
ACCESSION   XM_008761295
VERSION     XM_008761295.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008761295.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008761295.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6489
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6489
                     /gene="Pogz"
                     /note="pogo transposable element derived with ZNF domain;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 38 ESTs, 1 long SRA read, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 178 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:310658"
                     /db_xref="RGD:1309980"
     CDS             269..4501
                     /gene="Pogz"
                     /codon_start=1
                     /product="pogo transposable element with ZNF domain
                     isoform X1"
                     /protein_id="XP_008759517.1"
                     /db_xref="GeneID:310658"
                     /db_xref="RGD:1309980"
                     /translation="MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTPVSV
                     SQQPVSAPVPIAAHASVAGHLSTSTTVSSSGAQNSDSTKKTLVTLIANNNAGNTLVQQ
                     GGQPLILTQNPTPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQGFPVRNV
                     RPVQNAMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMTPVRPGSTM
                     PVRPTTNTFTTVIPATLTIRSTVPQSQSQQTKSTPSTSTTPIATQPTALGQLAGQPPG
                     QPNQTSNPKLAPSFPSPPAVSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPSLGQSP
                     GPVVVSNNSSAQRTSGPESSMKVTSSIPVFDLQDGGRKICPRCNAQFRVTEALRGHMC
                     YCCPEMVEYQKKGKSLDAEPSVPSAAKPASPEKTAPVTSTPSSTPIPALSPPTKVPEP
                     SESAGDTVQTKLIMLVDDFYYGRDGGKAAQLTSFPKVATSFRCPHCTKRLKNNIRFMN
                     HMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAF
                     ESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCPYCLKV
                     FKNGNAFQQHYMRHQKRNVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPG
                     TKVTIRASRGQPRTVPVSSNDAPSGALQEAAPLTSADPLPVFLYPPVQRNVQKRAVRK
                     MSVMGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPRKSPKY
                     LALFKNFVSGIKLACTSCTFATSVGDAMAKHLVFNPSHRSSNILPRGLSWMSYSRLGQ
                     TPERVLDRSMKNTYLPPPLLPNKAATVKPVGATSAEPQELAGPVLQALPSPASTATPP
                     ATPTHPQPSALPPLATEGTECLNVNEQEEGSPVTQEPEPASGAGSGGSGVGKKEQLSV
                     KKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSFEAEEKLAE
                     WVLIQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHHLTPHARRAVAH
                     TLPKHVAENAGLFIEFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQT
                     VGTGEPWCDVVLAILADGTVLPTLVFFRGQANRLANVPDSILLEAKDSGYSDDEIMEL
                     WSTRVWKKHTACQHSKSMLVMDCHRTHLSEEVLALLSASSTLPAVVPAGCSSKIQPLD
                     VCIKRTVKNFLHKKWKEQAREMADAACDSDVLLQLVLVWLGEVLSVIGDSPDLVQRSF
                     LVASVLPGPDGNVNSPTRNADMQEELIASLEEQLKLNGEQSEEHSASAPRPRSSPEET
                     VEPESLHQLFEGESETESFYGFEEADLDLMEI"
ORIGIN      
        1 gccacattcc ttggcccccc caccccctcc ctcggggccc ccccgccccc ctcgggaaaa
       61 aaatccaccc caatcactcg aacccgaggg agccttcctt tcaccctcgg ggagaggagc
      121 tttcaacggt tccctctcct ctgtctcccc cccaaccccc gtcccctccc ctgctcccac
      181 cccctactcc cggcgccggg tgcaaggtcc ctttaaggcg acggcacctt cctcgggtca
      241 gactaccggc ggcgacgacc acgggagtat ggcggacacc gaccttttta tggaatgtga
      301 ggaggaagaa ctggagccat ggcagaaaat cagtgatgtc attgaggact ctgtagttga
      361 agattacaat tcagtggata aaactactcc cgtttctgtg agccagcagc cagtctcagc
      421 tccagtgccc attgctgccc atgcttctgt ggctgggcac ctctctacat ccactactgt
      481 tagtagcagt ggggcacaga acagcgacag tacaaagaag actcttgtta cactaattgc
      541 caacaacaat gctggtaata ctttggtcca gcaaggtgga caaccactca tcttgaccca
      601 aaatccaaca ccgggtctgg gaacaatggt tactcaacca gtattgagac ctgtccaggt
      661 catgcagaat gccaatcatg tgactagctc ccctgtggcc tcacaaccta tcttcatcac
      721 tacccaggga ttccctgtaa ggaatgttcg ccctgtacag aatgccatga accaggttgg
      781 gatcgtgctg aatgtacagc aaggccaaac agtcagacca attacactgg tcccagcccc
      841 aggtacacag tttgttaagc cgacagttgg cgtcccacaa gtgttctctc agatgacccc
      901 cgtgaggcca ggctccacaa tgcctgtgag gcccaccacc aacaccttta ccaccgtcat
      961 cccagctact ctcaccatcc gaagcactgt cccacagtcc cagtcccagc agaccaagtc
     1021 cacccccagt acctccacta ctcccattgc cacacagcca accgcattgg ggcagctagc
     1081 tggtcagcct ccaggccagc ccaaccagac ctcgaatccc aaactagctc cctccttccc
     1141 ctctccacct gcagtgagca ttgccagctt tgtcactgtg aagcgacctg gggttacagg
     1201 tgaaaatagc aacgaagtgg ccaagttggt gaatactctt aacactatcc cttccctggg
     1261 ccagagtcct gggccagtgg tggtgtccaa caacagttct gctcaaagaa ccagtggacc
     1321 cgaatcttca atgaaagtga cctcttccat cccagtgttt gacctccagg acggtggacg
     1381 gaaaatatgt ccacggtgta atgctcagtt ccgagttact gaagctttga gaggtcacat
     1441 gtgttactgc tgccctgaaa tggttgagta ccaaaagaaa ggcaagtccc tcgatgcgga
     1501 gcccagtgtc ccatcagcag caaagcctgc atcccctgag aagacagccc cagttacttc
     1561 cacaccctcc tctacaccaa ttcctgctct ctcacctcct accaaagtgc cagagccaag
     1621 tgagagtgcg ggagacactg tccagaccaa gcttattatg cttgtcgatg acttttacta
     1681 cggacgggat gggggcaaag cagcccagct aactagcttc cctaaagttg ccacgtcttt
     1741 ccgatgccct cattgtacta agaggctaaa gaacaacatt cgattcatga accacatgaa
     1801 gcaccacgta gaacttgatc agcagaatgg cgaggtggat ggtcatacta tctgccaaca
     1861 ctgttaccgc cagttctcca cccctttcca gctccagtgc cacttggaaa atgttcatag
     1921 tccctatgaa tcaactacca agtgcaagat ctgtgagtgg gcctttgaaa gcgagccctt
     1981 gtttctccag catatgaaag acacccacaa gcctggagag atgccttatg tttgtcaggt
     2041 gtgtcaatat cgctcctccc tctactcaga ggtagacgtc cattttcgga tgatccatga
     2101 agacactcgg catttgctct gcccgtattg cctaaaagtc ttcaaaaacg gcaatgcctt
     2161 ccagcagcac tacatgaggc accagaagag aaatgtttat cactgcaaca aatgccggct
     2221 gcagtttctc tttgccaagg acaaaattga acacaagctt cagcaccata aaaccttccg
     2281 taagcctaag caactggaag gcttgaaacc aggcaccaag gtgacaatcc gggcttccag
     2341 ggggcagcca cgaactgttc ctgtgtcttc aaatgatgca ccttctggcg ctttgcagga
     2401 ggcagcacca ctgacctccg ctgaccccct acctgtcttc ctttaccctc ccgtccaacg
     2461 caatgtccag aagagagctg tcaggaaaat gagcgtcatg ggccggcaga cgtgtctgga
     2521 gtgcagcttt gagattccag atttccctaa ccatttccct acctacgtgc actgttctct
     2581 ctgtcgctat agcacctgct gctctcgagc ttatgccaat cacatgatca acaatcatgt
     2641 tccacggaag agtcccaagt atctggcttt gtttaaaaat tttgtaagtg gaatcaagct
     2701 ggcctgtact tcgtgtacct ttgctacctc cgtgggagat gccatggcca agcatttggt
     2761 gttcaacccc tcccacagat ctagcaacat cttaccacgg gggctcagtt ggatgtctta
     2821 ctcgaggctt ggccagactc ctgaacgagt gttggaccgg agcatgaaga atacgtatct
     2881 tccacctcct ctcctcccta acaaagctgc cactgtgaag cctgtaggag ccacctcagc
     2941 agagcctcag gagctggcag gtcctgtgct ccaggcactt ccatcaccag cctcaactgc
     3001 aaccccacca gcaaccccca ctcacccaca gccctctgcc ctgccaccct tggccacaga
     3061 ggggactgag tgtctgaatg tcaatgaaca ggaggaggga agccctgtca cccaggagcc
     3121 tgaaccagca tcaggtgctg gaagtggtgg cagtggggtt ggcaaaaaag agcagctgtc
     3181 tgtgaagaag cttcgggtag tgctgtttgc cctgtgctgc aacacagagc aggcggctga
     3241 acacttccga aacccccagc ggcgaattcg ccgttggctt cgacgctttc aggcctctca
     3301 gggagagaat ttagagggca aatatctcag ctttgaggca gaagaaaaac tggctgaatg
     3361 ggtgctgatc cagagagagc agcagctccc tgtaaatgaa gagaccttgt ttcagaaggc
     3421 caccaaaatc ggacgctctt tggaaggggg atttaagatc tcctatgagt gggctgtgcg
     3481 ctttatgctc cggcaccacc tcactcccca tgcccggcga gctgtagccc acacgttacc
     3541 gaagcatgta gcagaaaatg ctggactctt cattgagttt gtgcagcggc agattcacaa
     3601 ccaagactta cctttgtcta tgattgtggc tatcgatgag atctctttgt ttctggacac
     3661 agaggtgctg agcagtgatg accggaagga gaacgctctg cagacagtgg gcacagggga
     3721 gccttggtgt gacgtcgtgc tggctatcct agcagatggc actgtcctcc ccaccctggt
     3781 tttcttccga ggtcaagcga atcggcttgc taatgtgcca gactctatat tactagaggc
     3841 taaagacagt ggctatagtg atgatgaaat catggagctt tggtccaccc gtgtgtggaa
     3901 gaagcacaca gcttgtcagc acagcaaaag catgctggtg atggactgtc atcgcactca
     3961 cttgtcagaa gaggtgctgg ccctgctcag tgcctctagc actttgcctg cggtggttcc
     4021 cgcaggctgt agctctaaaa tccagccact agacgtgtgc atcaaacgaa ctgttaagaa
     4081 cttcctgcac aaaaagtgga aggagcaggc tcgggaaatg gcagatgctg cttgtgattc
     4141 tgatgtcttg cttcagctgg tgttggtctg gctgggtgag gtgctgagtg tcattgggga
     4201 ctccccagac ctagttcagc ggtccttcct tgtggctagt gttctgccag gccctgatgg
     4261 caacgttaac tcacccacac gcaacgctga tatgcaggag gagctcattg cctccctcga
     4321 ggagcagcta aagctaaatg gagaacagtc cgaggagcac tcagcttctg ccccccgacc
     4381 caggtcatcg cctgaagaga cagttgagcc tgaaagcctt catcagcttt ttgagggaga
     4441 aagtgagaca gagtctttct atggctttga ggaagctgac ctagatctga tggagattta
     4501 ggtgctgagg ctatggaatc attgaatcgg gtaggaaagt tgagggaggt tagaggggct
     4561 tagacaggag gggtaccagt ggggtacttg gtttataatt tcaatttatg ccaccactcc
     4621 cgacattgac tcttcctgtg aacttgtggg ttattatgaa caccagtcag taatgatcag
     4681 ttctgagccg aggagctggc ccattggtta ctcctgctaa aaccatgttt ttgtgaccct
     4741 tttttcttct ttaatttaaa tcactgtgtt tgctattttt cggacaaaat ctaggaaaac
     4801 aatcctttgt ggacaaatat taagttgttt tgtttccccc tttacctcaa ttgtatcata
     4861 gtatttctgg gttttgtttg tttactgtgt ggccgatgtc tttgggcatg acactataat
     4921 cattgttaac atgagaacgt tgctgcagat ggaaagaaga gtatgtagct cacaagctgg
     4981 cttatttaca aatgtggata cgtttttttc attgtggtct taacactttt atataaaaat
     5041 gaaaatgaaa aatgaatccc actgaactct ttccttctcc attcccctcc ctcttcagag
     5101 gtgttggtct cctcagcagc tctagatata aaattgtggc tttaaaaagt gcatgaacca
     5161 ccttgaaaca tccagaatgg atagatattt ctgtcctcac caccctccac caaaatacaa
     5221 cagaaacaat atttttttgt actcgtgacc cttgaccctt ttcctgattt tcacaccatt
     5281 cttcactctg gacaaaggag cacatgtgtc cctagcaagc aagagctgct gagtgaggcg
     5341 atgagtgttc aggtggaagc cattcctagt ctctgtcttc agccagcccc ctgctgtagt
     5401 ccctgctctg ttgaactctg ttgtcctgtg aagctcgtcc cgacagcacg cctgctcatc
     5461 acaggtccaa ctggcatatg ttacatgttg actaaacaga cagactgctc gaactcctgc
     5521 ttacacgtgg ctttcctgtc cctcatgttc agagaagaac tggatgtgaa aagcatagag
     5581 gtgtgcacag agaaagacaa gaatctttat ttttcactgc caacttcaag gaaaattttt
     5641 ctacagtttg catgagggat tttttttttt taaagaaaat atgtactcgt ggtgataaac
     5701 cagaatgtac tgtatcatag aggagaacaa aacaccaagt ctacctttcc cacagccaca
     5761 ttgttcttgt caatcctgag gcgttcagtt tctcctgaga gccaaggagg cagcctgcac
     5821 aagcgtgtac gtggttcatc tttaaagtgt acataagtgg agcatttact aaaatgagag
     5881 gaaaggattt ataaactttt ctatatgtcc ccattgaata ggctttcata gactgggaga
     5941 tactcaaggc gtgcaggcct ggtggtacag gtgtgtggca tttgtgacca ccactcctct
     6001 ccctgcagtt tttgttatct ttaactccca gcatattata acacagtgaa caggactgat
     6061 cccagaagtt tggccagctc taccatggcg ttggagatct gaactgagaa cccacctgga
     6121 cttctgttcc cagctttttg tgtaatgcca ttttcttgat gacggactac acttcagagc
     6181 caaccttctg cctttgagaa agctggagaa ctgtaaatgg tcacttgaat ctacacctaa
     6241 tcctctttgg tcgtctctgc agcagccaca gccttagcag agctgggttc ctggcctctg
     6301 cacattgact ttggatgggt aatttttttt tttttttttt aaagatcatg gtaaccgtga
     6361 atcggctggg ttttggcaag caagttgtct ttgtggactc tgcctgcatg gcttagtagt
     6421 agaaggaagg ttttttggtt ttgttttttt ataattcagt ttaatcaata aacatgtatt
     6481 tattgacaa
//
