LOCUS       NM_001107693            6080 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus pogo transposable element derived with ZNF domain
            (Pogz), mRNA.
ACCESSION   NM_001107693 XM_001053612 XM_001053667 XM_001053724 XM_227475
VERSION     NM_001107693.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6080)
  AUTHORS   Baude,A., Aaes,T.L., Zhai,B., Al-Nakouzi,N., Oo,H.Z., Daugaard,M.,
            Rohde,M. and Jaattela,M.
  TITLE     Hepatoma-derived growth factor-related protein 2 promotes DNA
            repair by homologous recombination
  JOURNAL   Nucleic Acids Res 44 (5), 2214-2226 (2016)
   PUBMED   26721387
REFERENCE   2  (bases 1 to 6080)
  AUTHORS   Nozawa,R.S., Nagao,K., Masuda,H.T., Iwasaki,O., Hirota,T.,
            Nozaki,N., Kimura,H. and Obuse,C.
  TITLE     Human POGZ modulates dissociation of HP1alpha from mitotic
            chromosome arms through Aurora B activation
  JOURNAL   Nat Cell Biol 12 (7), 719-727 (2010)
   PUBMED   20562864
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1 and CA504014.1.
            
            On Aug 12, 2019 this sequence version replaced NM_001107693.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760386 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-128               JAXUCZ010000002.1  185101904-185102031
            129-304             JAXUCZ010000002.1  185108073-185108248
            305-413             JAXUCZ010000002.1  185109519-185109627
            414-704             JAXUCZ010000002.1  185111321-185111611
            705-914             JAXUCZ010000002.1  185111691-185111900
            915-1021            JAXUCZ010000002.1  185117118-185117224
            1022-1359           JAXUCZ010000002.1  185118021-185118358
            1360-1514           JAXUCZ010000002.1  185119301-185119455
            1515-1615           JAXUCZ010000002.1  185121663-185121763
            1616-1762           JAXUCZ010000002.1  185122190-185122336
            1763-1897           JAXUCZ010000002.1  185123942-185124076
            1898-2067           JAXUCZ010000002.1  185124190-185124359
            2068-2208           JAXUCZ010000002.1  185124509-185124649
            2209-2265           JAXUCZ010000002.1  185125296-185125352
            2266-2378           JAXUCZ010000002.1  185125495-185125607
            2379-2403           JAXUCZ010000002.1  185125941-185125965
            2404-6062           JAXUCZ010000002.1  185126079-185129737
            6063-6080           CA504014.1         1-18                c
FEATURES             Location/Qualifiers
     source          1..6080
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..6080
                     /gene="Pogz"
                     /note="pogo transposable element derived with ZNF domain"
                     /db_xref="GeneID:310658"
                     /db_xref="RGD:1309980"
     exon            1..128
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     CDS             5..4078
                     /gene="Pogz"
                     /codon_start=1
                     /product="pogo transposable element with ZNF domain"
                     /protein_id="NP_001101163.1"
                     /db_xref="GeneID:310658"
                     /db_xref="RGD:1309980"
                     /translation="MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTPAGN
                     TLVQQGGQPLILTQNPTPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQGF
                     PVRNVRPVQNAMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMTPVR
                     PGSTMPVRPTTNTFTTVIPATLTIRSTVPQSQSQQTKSTPSTSTTPIATQPTALGQLA
                     GQPPGQPNQTSNPKLAPSFPSPPAVSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPS
                     LGQSPGPVVVSNNSSAQRTSGPESSMKVTSSIPVFDLQDGGRKICPRCNAQFRVTEAL
                     RGHMCYCCPEMVEYQKKGKSLDAEPSVPSAAKPASPEKTAPVTSTPSSTPIPALSPPT
                     KVPEPSESAGDTVQTKLIMLVDDFYYGRDGGKAAQLTSFPKVATSFRCPHCTKRLKNN
                     IRFMNHMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKI
                     CEWAFESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCP
                     YCLKVFKNGNAFQQHYMRHQKRNVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLE
                     GLKPGTKVTIRASRGQPRTVPVSSNDAPSGALQEAAPLTSADPLPVFLYPPVQRNVQK
                     RAVRKMSVMGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPR
                     KSPKYLALFKNFVSGIKLACTSCTFATSVGDAMAKHLVFNPSHRSSNILPRGLSWMSY
                     SRLGQTPERVLDRSMKNTYLPPPLLPNKAATVKPVGATSAEPQELAGPVLQALPSPAS
                     TATPPATPTHPQPSALPPLATEGTECLNVNEQEEGSPVTQEPEPASGAGSGGSGVGKK
                     EQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSFEAE
                     EKLAEWVLIQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHHLTPHAR
                     RAVAHTLPKHVAENAGLFIEFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKE
                     NALQTVGTGEPWCDVVLAILADGTVLPTLVFFRGQANRLANVPDSILLEAKDSGYSDD
                     EIMELWSTRVWKKHTACQHSKSMLVMDCHRTHLSEEVLALLSASSTLPAVVPAGCSSK
                     IQPLDVCIKRTVKNFLHKKWKEQAREMADAACDSDVLLQLVLVWLGEVLSVIGDSPDL
                     VQRSFLVASVLPGPDGNVNSPTRNADMQEELIASLEEQLKLNGEQSEEHSASAPRPRS
                     SPEETVEPESLHQLFEGESETESFYGFEEADLDLMEI"
     exon            129..304
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            305..413
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            414..704
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            705..914
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1021
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1359
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            1360..1514
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            1515..1615
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            1616..1762
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            1763..1897
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            1898..2067
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            2068..2208
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            2209..2265
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            2266..2378
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            2379..2403
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
     exon            2404..6066
                     /gene="Pogz"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tagtatggcg gacaccgacc tttttatgga atgtgaggag gaagaactgg agccatggca
       61 gaaaatcagt gatgtcattg aggactctgt agttgaagat tacaattcag tggataaaac
      121 tactcccgct ggtaatactt tggtccagca aggtggacaa ccactcatct tgacccaaaa
      181 tccaacaccg ggtctgggaa caatggttac tcaaccagta ttgagacctg tccaggtcat
      241 gcagaatgcc aatcatgtga ctagctcccc tgtggcctca caacctatct tcatcactac
      301 ccagggattc cctgtaagga atgttcgccc tgtacagaat gccatgaacc aggttgggat
      361 cgtgctgaat gtacagcaag gccaaacagt cagaccaatt acactggtcc cagccccagg
      421 tacacagttt gttaagccga cagttggcgt cccacaagtg ttctctcaga tgacccccgt
      481 gaggccaggc tccacaatgc ctgtgaggcc caccaccaac acctttacca ccgtcatccc
      541 agctactctc accatccgaa gcactgtccc acagtcccag tcccagcaga ccaagtccac
      601 ccccagtacc tccactactc ccattgccac acagccaacc gcattggggc agctagctgg
      661 tcagcctcca ggccagccca accagacctc gaatcccaaa ctagctccct ccttcccctc
      721 tccacctgca gtgagcattg ccagctttgt cactgtgaag cgacctgggg ttacaggtga
      781 aaatagcaac gaagtggcca agttggtgaa tactcttaac actatccctt ccctgggcca
      841 gagtcctggg ccagtggtgg tgtccaacaa cagttctgct caaagaacca gtggacccga
      901 atcttcaatg aaagtgacct cttccatccc agtgtttgac ctccaggacg gtggacggaa
      961 aatatgtcca cggtgtaatg ctcagttccg agttactgaa gctttgagag gtcacatgtg
     1021 ttactgctgc cctgaaatgg ttgagtacca aaagaaaggc aagtccctcg atgcggagcc
     1081 cagtgtccca tcagcagcaa agcctgcatc ccctgagaag acagccccag ttacttccac
     1141 accctcctct acaccaattc ctgctctctc acctcctacc aaagtgccag agccaagtga
     1201 gagtgcggga gacactgtcc agaccaagct tattatgctt gtcgatgact tttactacgg
     1261 acgggatggg ggcaaagcag cccagctaac tagcttccct aaagttgcca cgtctttccg
     1321 atgccctcat tgtactaaga ggctaaagaa caacattcga ttcatgaacc acatgaagca
     1381 ccacgtagaa cttgatcagc agaatggcga ggtggatggt catactatct gccaacactg
     1441 ttaccgccag ttctccaccc ctttccagct ccagtgccac ttggaaaatg ttcatagtcc
     1501 ctatgaatca actaccaagt gcaagatctg tgagtgggcc tttgaaagcg agcccttgtt
     1561 tctccagcat atgaaagaca cccacaagcc tggagagatg ccttatgttt gtcaggtgtg
     1621 tcaatatcgc tcctccctct actcagaggt agacgtccat tttcggatga tccatgaaga
     1681 cactcggcat ttgctctgcc cgtattgcct aaaagtcttc aaaaacggca atgccttcca
     1741 gcagcactac atgaggcacc agaagagaaa tgtttatcac tgcaacaaat gccggctgca
     1801 gtttctcttt gccaaggaca aaattgaaca caagcttcag caccataaaa ccttccgtaa
     1861 gcctaagcaa ctggaaggct tgaaaccagg caccaaggtg acaatccggg cttccagggg
     1921 gcagccacga actgttcctg tgtcttcaaa tgatgcacct tctggcgctt tgcaggaggc
     1981 agcaccactg acctccgctg accccctacc tgtcttcctt taccctcccg tccaacgcaa
     2041 tgtccagaag agagctgtca ggaaaatgag cgtcatgggc cggcagacgt gtctggagtg
     2101 cagctttgag attccagatt tccctaacca tttccctacc tacgtgcact gttctctctg
     2161 tcgctatagc acctgctgct ctcgagctta tgccaatcac atgatcaaca atcatgttcc
     2221 acggaagagt cccaagtatc tggctttgtt taaaaatttt gtaagtggaa tcaagctggc
     2281 ctgtacttcg tgtacctttg ctacctccgt gggagatgcc atggccaagc atttggtgtt
     2341 caacccctcc cacagatcta gcaacatctt accacggggg ctcagttgga tgtcttactc
     2401 gaggcttggc cagactcctg aacgagtgtt ggaccggagc atgaagaata cgtatcttcc
     2461 acctcctctc ctccctaaca aagctgccac tgtgaagcct gtaggagcca cctcagcaga
     2521 gcctcaggag ctggcaggtc ctgtgctcca ggcacttcca tcaccagcct caactgcaac
     2581 cccaccagca acccccactc acccacagcc ctctgccctg ccacccttgg ccacagaggg
     2641 gactgagtgt ctgaatgtca atgaacagga ggagggaagc cctgtcaccc aggagcctga
     2701 accagcatca ggtgctggaa gtggtggcag tggggttggc aaaaaagagc agctgtctgt
     2761 gaagaagctt cgggtagtgc tgtttgccct gtgctgcaac acagagcagg cggctgaaca
     2821 cttccgaaac ccccagcggc gaattcgccg ttggcttcga cgctttcagg cctctcaggg
     2881 agagaattta gagggcaaat atctcagctt tgaggcagaa gaaaaactgg ctgaatgggt
     2941 gctgatccag agagagcagc agctccctgt aaatgaagag accttgtttc agaaggccac
     3001 caaaatcgga cgctctttgg aagggggatt taagatctcc tatgagtggg ctgtgcgctt
     3061 tatgctccgg caccacctca ctccccatgc ccggcgagct gtagcccaca cgttaccgaa
     3121 gcatgtagca gaaaatgctg gactcttcat tgagtttgtg cagcggcaga ttcacaacca
     3181 agacttacct ttgtctatga ttgtggctat cgatgagatc tctttgtttc tggacacaga
     3241 ggtgctgagc agtgatgacc ggaaggagaa cgctctgcag acagtgggca caggggagcc
     3301 ttggtgtgac gtcgtgctgg ctatcctagc agatggcact gtcctcccca ccctggtttt
     3361 cttccgaggt caagcgaatc ggcttgctaa tgtgccagac tctatattac tagaggctaa
     3421 agacagtggc tatagtgatg atgaaatcat ggagctttgg tccacccgtg tgtggaagaa
     3481 gcacacagct tgtcagcaca gcaaaagcat gctggtgatg gactgtcatc gcactcactt
     3541 gtcagaagag gtgctggccc tgctcagtgc ctctagcact ttgcctgcgg tggttcccgc
     3601 aggctgtagc tctaaaatcc agccactaga cgtgtgcatc aaacgaactg ttaagaactt
     3661 cctgcacaaa aagtggaagg agcaggctcg ggaaatggca gatgctgctt gtgattctga
     3721 tgtcttgctt cagctggtgt tggtctggct gggtgaggtg ctgagtgtca ttggggactc
     3781 cccagaccta gttcagcggt ccttccttgt ggctagtgtt ctgccaggcc ctgatggcaa
     3841 cgttaactca cccacacgca acgctgatat gcaggaggag ctcattgcct ccctcgagga
     3901 gcagctaaag ctaaatggag aacagtccga ggagcactca gcttctgccc cccgacccag
     3961 gtcatcgcct gaagagacag ttgagcctga aagccttcat cagctttttg agggagaaag
     4021 tgagacagag tctttctatg gctttgagga agctgaccta gatctgatgg agatttaggt
     4081 gctgaggcta tggaatcatt gaatcgggta ggaaagttga gggaggttag aggggcttag
     4141 acaggagggg taccagtggg gtacttggtt tataatttca atttatgcca ccactcccga
     4201 cattgactct tcctgtgaac ttgtgggtta ttatgaacac cagtcagtaa tgatcagttc
     4261 tgagccgagg agctggccca ttggttactc ctgctaaaac catgtttttg tgaccctttt
     4321 ttcttcttta atttaaatca ctgtgtttgc tatttttcgg acaaaatcta ggaaaacaat
     4381 cctttgtgga caaatattaa gttgttttgt ttcccccttt acctcaattg tatcatagta
     4441 tttctgggtt ttgtttgttt actgtgtggc cgatgtcttt gggcatgaca ctataatcat
     4501 tgttaacatg agaacgttgc tgcagatgga aagaagagta tgtagctcac aagctggctt
     4561 atttacaaat gtggatacgt ttttttcatt gtggtcttaa cacttttata taaaaatgaa
     4621 aatgaaaaat gaatcccact gaactctttc cttctccatt cccctccctc ttcagaggtg
     4681 ttggtctcct cagcagctct agatataaaa ttgtggcttt aaaaagtgca tgaaccacct
     4741 tgaaacatcc agaatggata gatatttctg tcctcaccac cctccaccaa aatacaacag
     4801 aaacaatatt tttttgtact cgtgaccctt gacccttttc ctgattttca caccattctt
     4861 cactctggac aaaggagcac atgtgtccct agcaagcaag agctgctgag tgaggcgatg
     4921 agtgttcagg tggaagccat tcctagtctc tgtcttcagc cagccccctg ctgtagtccc
     4981 tgctctgttg aactctgttg tcctgtgaag ctcgtcccga cagcacgcct gctcatcaca
     5041 ggtccaactg gcatatgtta catgttgact aaacagacag actgctcgaa ctcctgctta
     5101 cacgtggctt tcctgtccct catgttcaga gaagaactgg atgtgaaaag catagaggtg
     5161 tgcacagaga aagacaagaa tctttatttt tcactgccaa cttcaaggaa aatttttcta
     5221 cagtttgcat gagggatttt ttttttttaa agaaaatatg tactcgtggt gataaaccag
     5281 aatgtactgt atcatagagg agaacaaaac accaagtcta cctttcccac agccacattg
     5341 ttcttgtcaa tcctgaggcg ttcagtttct cctgagagcc aaggaggcag cctgcacaag
     5401 cgtgtacgtg gttcatcttt aaagtgtaca taagtggagc atttactaaa atgagaggaa
     5461 aggatttata aacttttcta tatgtcccca ttgaataggc tttcatagac tgggagatac
     5521 tcaaggcgtg caggcctggt ggtacaggtg tgtggcattt gtgaccacca ctcctctccc
     5581 tgcagttttt gttatcttta actcccagca tattataaca cagtgaacag gactgatccc
     5641 agaagtttgg ccagctctac catggcgttg gagatctgaa ctgagaaccc acctggactt
     5701 ctgttcccag ctttttgtgt aatgccattt tcttgatgac ggactacact tcagagccaa
     5761 ccttctgcct ttgagaaagc tggagaactg taaatggtca cttgaatcta cacctaatcc
     5821 tctttggtcg tctctgcagc agccacagcc ttagcagagc tgggttcctg gcctctgcac
     5881 attgactttg gatgggtaat tttttttttt tttttttaaa gatcatggta accgtgaatc
     5941 ggctgggttt tggcaagcaa gttgtctttg tggactctgc ctgcatggct tagtagtaga
     6001 aggaaggttt tttggttttg tttttttata attcagttta atcaataaac atgtatttat
     6061 tgacaaaaaa aaaaaaaaaa
//
