LOCUS       NM_001107194            6927 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus pogo transposable element derived with KRAB
            domain (Pogk), mRNA.
ACCESSION   NM_001107194 XM_001071803 XM_001071841 XM_222846
VERSION     NM_001107194.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6927)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Jan 1, 2009 this sequence version replaced NM_001107194.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.42750.1,
                                           SRR26643296.32115.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-100               JAXUCZ010000013.1  81196227-81196326   c
            101-234             JAXUCZ010000013.1  81194965-81195098   c
            235-361             JAXUCZ010000013.1  81190105-81190231   c
            362-460             JAXUCZ010000013.1  81188657-81188755   c
            461-6927            JAXUCZ010000013.1  81180410-81186876   c
FEATURES             Location/Qualifiers
     source          1..6927
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q23"
     gene            1..6927
                     /gene="Pogk"
                     /note="pogo transposable element derived with KRAB domain"
                     /db_xref="GeneID:304941"
                     /db_xref="RGD:1308951"
     exon            1..100
                     /gene="Pogk"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..1914
                     /gene="Pogk"
                     /codon_start=1
                     /product="pogo transposable element with KRAB domain"
                     /protein_id="NP_001100664.2"
                     /db_xref="GeneID:304941"
                     /db_xref="RGD:1308951"
                     /translation="MPGHNPRRRLRRRHPLGREMESRAYPLNLTLKEEQKEDEVEIQE
                     LEDGPVEMQKVQICSEGTWVPALFDEVAIYFSDEEWEVLTEQQKALYREVMRMNYETV
                     LSLEFPFPKPDMINRLEREEECPESDEWRLQGVTFAENEESDFRTPDWANPMNATSHF
                     PQPQHFNSFGLRLPQDITELPEWSEGYPFYMAMGFPGYDLSADDLASKFQFSRGMRRS
                     YDAGFKLMVVEHAESTNNCQAAKQFGVLEKNVRDWRKVKPQLQNAHAMRRAFRGPKNG
                     RFALVDQRVAEYVRYMQAKGDPITREAMQLKALEIAQEMNIPEKGFKASLGWCRRMMR
                     RYDLSLRHKVPVPQHLAEDLTEKLVTYQQSVLALRRTHDYEVAQMGNADETPICLEVP
                     SRVTVDNQGEKPILVKTPGREKLRITAMLGVLADGRKLPPYIILRGTYIPPGKFPSGM
                     EIRCHRYGWMTEDLMQDWLEVVWRRRTGAVPKQRGMLILNGFRCHATDSVKTSMESMN
                     TDMVIIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLF
                     LEWIMVAWNSISSESIVQGFRKCHISSNLEEEGDVLWEIEGELPKERGHEGVAEDD"
     exon            101..234
                     /gene="Pogk"
                     /inference="alignment:Splign:2.1.0"
     exon            235..361
                     /gene="Pogk"
                     /inference="alignment:Splign:2.1.0"
     exon            362..460
                     /gene="Pogk"
                     /inference="alignment:Splign:2.1.0"
     exon            461..6927
                     /gene="Pogk"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggccgcgctg gggcggcggg agcggcggag ccgatggcgc ggtgaatgcc gggtcacaac
       61 cctcgtcgcc gcttgcggcg acgccacccg ctcggccggg aaatggagtc ccgagcctac
      121 cctctaaatt tgaccctgaa agaagagcaa aaagaagatg aggttgagat ccaggaattg
      181 gaggatggtc ccgtagagat gcagaaagtg caaatctgct cggaaggcac gtgggtacca
      241 gccctatttg atgaggtggc catatatttt tcggatgagg agtgggaagt tctgacagag
      301 caacaaaaag ccctctaccg ggaagtcatg aggatgaatt atgagactgt cctgtccctg
      361 gaattcccat tccccaagcc agatatgatc aatcggttgg aaagggaaga ggagtgtcct
      421 gaatctgatg agtggcggct ccagggagta acctttgcag aaaatgaaga atctgatttt
      481 aggactccag attgggccaa cccgatgaat gccacctccc attttcctca acctcagcac
      541 ttcaacagct ttgggctgcg tctgccgcag gacatcactg aactgcctga gtggagtgag
      601 gggtacccct tctatatggc catgggcttc cctgggtatg acctctcagc tgacgacttg
      661 gcgagcaagt ttcagttcag tcgcggcatg cgccgcagtt acgatgcggg gttcaagctg
      721 atggtggtgg agcacgctga gagtaccaac aactgtcagg ctgccaagca gttcggggtg
      781 ttggaaaaga atgtccgaga ctggcgcaaa gtgaagccac agctccaaaa cgcccatgcc
      841 atgcggcggg cattccgagg ccccaagaat ggaagatttg ctctggtaga ccagcgggtg
      901 gctgagtatg tcagatacat gcaggccaaa ggggacccca tcaccaggga ggcaatgcag
      961 ttgaaagctc ttgaaatcgc ccaggaaatg aacattccag agaaagggtt caaggcaagt
     1021 ctgggctggt gtcggaggat gatgagaagg tatgacctat ccctgaggca taaagtgcca
     1081 gttcctcagc acctggccga ggacctgact gagaagctcg tcacttacca gcagagtgtg
     1141 cttgctctgc gccggacaca cgactatgag gtggcacaga tgggcaatgc agatgaaaca
     1201 cccatctgct tagaagtgcc ctctagagtg actgttgaca accagggtga aaagcccatc
     1261 ctggtcaaga caccaggcag ggagaaactg aggatcacag ccatgctggg ggtcttggct
     1321 gatgggagga agttaccacc atacatcatc ttgaggggga catatatccc ccctgggaag
     1381 tttcccagtg gcatggaaat ccgctgccac cgctatggat ggatgactga ggacttgatg
     1441 caagactggt tggaagttgt gtggagacgg agaactggag ctgtacccaa acaacgaggg
     1501 atgctgatcc tgaatggctt ccggtgccat gccaccgact ctgtgaagac ttccatggag
     1561 agtatgaaca cagacatggt gattatcccg gggggcctga cctcccagct gcaggtgctg
     1621 gatgtggttg tctacaagcc actgaatgac agtgttcggg cccagtattc caactggctt
     1681 ctggctggga acctggcact gagccccact ggaaatgcta agaagccacc gctgggcctc
     1741 ttcctggagt ggatcatggt tgcgtggaat agtatctcaa gtgaatcaat tgtccagggg
     1801 ttcagaaagt gccacatctc tagcaactta gaggaagaag gtgatgtcct ctgggaaatc
     1861 gagggcgagt tgcccaaaga acgtggtcat gaaggtgtgg ctgaggatga ctgagaggat
     1921 tcaggtaact ggtctggaat agatcctccg ccatcactgc tgcccctggt cgtagctagc
     1981 acttaccttt tgtctggccc ttagttttct cttttcgagt tctcttgaaa tagcctgcca
     2041 tgcagcaggt cctagcactt tcattgtcag aaactgattt agattgggtt ctgtggcctg
     2101 gatccaggag tgcttttata atgggtaaca tgaacaagga actgtcacaa cacttcacat
     2161 gagagcagtc ccactgcaaa gttacttggg cctctagaca cagtctgaca ttgtttactt
     2221 cacaaaaagg ttgtctaaag agacaacttt cttttaaaat gctgaacatt tagggctggg
     2281 ctgtctgctt gaattactta acaaagttgc actgcctttc actgatctgc aggaccaccg
     2341 cccagggaga gaacaaagtc tgccttcagt ttggtaacct ctggtcctca gctctgtgtc
     2401 ctagggaggt tattatcatc tccatgtcca ctagggagat gacaatatgt attgtttgct
     2461 tttgtctagg gaatattgag agtttaaaaa tatcatcttg ctttcataga acttcagtta
     2521 tggggtgagc cgttagaggc aattcctgtt gtcagcagga atctgaaaga tgatgttttt
     2581 aaactgaatc tttgaagagc tgcagagctg gcctagcagt taagagcata actgttcctg
     2641 cacagttcgg ttcccagcac ccacatccta cagctcataa cacctgcaac ttgagtttga
     2701 gtccagtgac ctcttttagc ctccctttga cacctgcagt cacatgcaca ctttcacaca
     2761 cagaaacgct gtatttgtgt gactaaaaac agccttgggc tagagagatg gctcagcagt
     2821 tagggatgct taccattcat ccttgcagag gactgcattt agtttccagc acctgtataa
     2881 cagctcacaa ccagctgtaa ctccagttcc agggcatcca atgccctctt ctagcctctg
     2941 tgctcctgca tatatatggt gcagactcac acatagacac ataaaattaa cctagcaaag
     3001 gcccacagcc cctatacaca cactttgagc aaacaggaga aggaccagag ccagagtaag
     3061 ggacacatag aaagcagaca actcgcccct ttcccatttt ccttttcaat ctacctacat
     3121 actttgaaaa ggaaaatggc cagctcttta atagaaaacc taaaattagc atacctttcc
     3181 tttaaaaacg actattagtt tacattttac ttgtctccct caaccccacc acgcaagtga
     3241 aagctaatag aagtctttgc cccgtgagct gtatacgcac aggctcctta gtggcacaca
     3301 cccccttcct gtcctcatac cctacacact ctttataaag cccatggatt caggctccct
     3361 cctttgctgc tgaccactct gctgccccat tggacagcag actttgagtt gcagttgttt
     3421 tagcctttca cattcttgct ttcaccctgt tagaaaacac tttcaatttt ctaagcaatt
     3481 taccactcca ggaacctagt caaagactgc cagaaaagga aagggcagaa gaccatgcca
     3541 agccacagct gtgcacccag ggacattcca catcagcttg agcttctgct cctccagatg
     3601 ctaccatctc tgtacagctg ctgggggagg taacggaaac agacatgaag agattcagaa
     3661 gacacaagca ttaaaccacc tcctgctgtg gaatagaaca ctattttgtt aaaagacatc
     3721 caaaagtctg aactgatgtc tacttaggtt ctctccgttt tccagcaaat ggaactgtga
     3781 ttgaaacagt tgggagaaaa aggaaaactt gtaagatggc tgcagagaga ccaaaatggg
     3841 cagtgaggct ctctgagcat ccttagtctg gagagcatga acatcccatc aagacagtcc
     3901 tatctactat accctgtcag atgtcagcca agtctaggac ccttatgttc agcaacaaga
     3961 ttagaaaaga aacttggtgc cccatttctt ctctcagagc tgtctcgatc tgctcagtct
     4021 agaagcctat aaacccaaat gagcaaaggt gttttctgga gaacacctct acagcaccaa
     4081 gatgtaatgt caccacagct ctcatgtcct tactgtggga aaaaaacctc aagtgtgcgt
     4141 gtgtgtgtat gtgtgtacac ctccataggt gcttcagtag aagctgtttc cacacaggtc
     4201 aagactaaag gaaagctttt gtagaaacat gtcacacatg tactcctgtt acatgtctac
     4261 tcactgaggg aatgagatgt taatgagcag gggtgggggt ctggagagat ggctcagcgg
     4321 ttaagagcac tgactgttct tccagagggc ctgagttcaa ttctcagcaa ccacatggtg
     4381 gctcacaacc atctgtaatg ggatccgatg ccctcttctg gtgtgtctga agacagtgac
     4441 agtgtactca tttaaataaa atctttaaaa agcaacaaac aaaaaaacca gtaggacact
     4501 ggcttggtgc agaagatggc ttttctgtag gtaaactagg ttagggtgca agataaagac
     4561 tttaaaataa acgatgctct tacagtcacc tttccaatct ggttggcagc tagacctttc
     4621 tagtgtctta catgatgacc tgtcaccttt aatgaggcag cccatggtgc acaagccttt
     4681 gcttttcagg ctgcctgcag gagtcgacat tcctgtctac ccagaacaag gcccactgac
     4741 ttggaaaaag gcaatgggag gaactgggcc ttaagtcaca gctgctttta gactccaacc
     4801 atacaagaat aggagtcact gacgacttct gcaatggtaa tttgcattct catttaagtc
     4861 aactgctaag aaaaacattc cttcaacact atgctacaaa actcccacca gaacctcata
     4921 ggcaaagcca ttgctagatc cttcattcca agttctcagt ctagccagca ggttgctgag
     4981 atcacatttc cttcctccgc tctgctcctg tggatactgt acattgttct cggcatcttc
     5041 cccagtttct actcaggtat tcatgctcct gtctgtcctt aactcttctc atgtttaacc
     5101 agtcattaac ctgcccagtt tgtcagagtt ccaaacacat gatcaagact tttaagaact
     5161 caaggaactg ctgacatttt gtttcctatc agctttgtct gtaccgtctt gtcacgccca
     5221 gtgccatcta attaaaccct gttcctctcc acgcactcat caggtttgtg ttttattatc
     5281 ttcctttgac tgtcctgttt ctagactatt tttcttgctt gataaagaat gtcatgtttg
     5341 agtttcccca caaaagccag gtatcttaag agtagaaaat gggtttaact cctttttcat
     5401 tccataccct cactcatcag ctgagatgcc ttttaggctg catagcactg gaactttcct
     5461 agagtgatgg ttctgctgtc tgggtcttct gggcacattc ttccactgac ttaaggtgct
     5521 ctatacctag catagcccca ggacaactac tgagcagaac agctatttcc tgagaattac
     5581 catagcacac tgagactggt actccctact agacagaaac tgatcccagt aataaacttt
     5641 gataataaag acagtaggct ctggtggttt tatttaccta ctggtagtgt caaaagttaa
     5701 gttttaagct attgcctaca tgtgactcat caatctggca gcactgcgtg acaccactga
     5761 agcagtctcc tggcatgtac tgcaagtggt gcaagctttg ttttaaagga aggggactat
     5821 agggttaaac tagttcataa aagttagaga ggttcagata ggtttcttct gtagattgtc
     5881 ttagcagtgt tacagccatg attaaagtta cagaggagtc aatgtgcaaa gttgatagat
     5941 gtcattttca taaatttctc aagtataagt atattcacag gcttctattg tgtgccgtta
     6001 agcacagaag tgttagatgg acttggtaac agtgggggaa acaaagtgct agggtgttac
     6061 aatgaatggc taaggtatgt gcctggtaaa gtaaggcaga cagttggtac atagtcacct
     6121 gtggctaaac acgctactaa aacctaaaaa cagtcgaaac aacttgggag tgagtcactg
     6181 taattacagt ctcttaacag ctttcttcaa gtgcttttcc taagttattt ttgacaatgt
     6241 gtttattatt tcctaattgt aggacattgc atatagacgc atgaccaaca gagataacag
     6301 atatagagcc agcctttggt agaacacaaa aattgaaatc tttttcagga actcttaaat
     6361 atcttaattt ctattatgtc cttgccatac tcccaacccc atctgcccac ttcagaaaat
     6421 cacttgacac ctggcatgga agacagaccc aagtgtaaac ctcaaaactg gatggatctg
     6481 gaaccctgtg gtctcactgg agaagtcact aagcataggc cagggcctag cacagtgaac
     6541 aacttcgagc ttagaacatc ctctgctaca cccttttgga attctccatt gctggggaca
     6601 gccaagacca gctaccactc atagccgcct ctgtgaattc aggagaatac acaacaccac
     6661 atcctgggca gcactggggc cctttgtgca gcagtggtct gtgcccatca ttccaaatcc
     6721 tttcgacctc aaaaggttct tgagtgtccc ccacctgaca ccctaaaagg tttgctgttt
     6781 gggttttttt attatttttt ttaagtctta agctgcattc ctttgaagtt tgagctaaga
     6841 tctcatacgg ctgcactttt gcttctgtgg aagagaatat tccttatctg cttatttgaa
     6901 taaacagaaa aggggtttct cccaaaa
//
