LOCUS       NM_001106607            2034 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus podocalyxin-like 2 (Podxl2), mRNA.
ACCESSION   NM_001106607 XM_001072254 XM_216209
VERSION     NM_001106607.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2034)
  AUTHORS   Kerr,S.C., Fieger,C.B., Snapp,K.R. and Rosen,S.D.
  TITLE     Endoglycan, a member of the CD34 family of sialomucins, is a ligand
            for the vascular selectins
  JOURNAL   J Immunol 181 (2), 1480-1490 (2008)
   PUBMED   18606703
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473957.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_216209.4, XM_001072254.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161970.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760396 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2034
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..2034
                     /gene="Podxl2"
                     /gene_synonym="RGD1305815"
                     /note="podocalyxin-like 2"
                     /db_xref="GeneID:297433"
                     /db_xref="RGD:1305815"
     exon            1..73
                     /gene="Podxl2"
                     /gene_synonym="RGD1305815"
                     /inference="alignment:Splign:2.1.0"
     CDS             13..1824
                     /gene="Podxl2"
                     /gene_synonym="RGD1305815"
                     /note="podocalyxin-like protein 2"
                     /codon_start=1
                     /product="podocalyxin-like protein 2 precursor"
                     /protein_id="NP_001100077.1"
                     /db_xref="GeneID:297433"
                     /db_xref="RGD:1305815"
                     /translation="MARPLRAAGLPPPLLLLLAAGVSLGACAVTMDEPGPEGLTSTSL
                     LDLLLPTDFEPLDSEEPSEAMGLGAGLAPGSGFPSEDSEESRLLQPPQYFWEEEELNG
                     SSLDLGPTADYVFPDLTEKVASMEDPGQAPDLPNLPSILPKMDLAEPPWHMPLEEEEE
                     EEEEEEEEEREEEEREKEEAEEEEEEELLPVSGSPGATTQAHAPSPSTSSTSSQSPGA
                     TRHRQDDSGDQATSGIEVESSVKPTLSVPSVTPSTVALGVQNYSQESGGTEWPTGGLG
                     VQSEVPQGAGEEATVGAADYDGQQGALPSTSLPQTVPPSGTEVPGEGPLYPRTPDSFP
                     PGPQDTESTPSSATWGQEGLSEQPLEGQTAEAHSLTPWDSTQVICKDWSNLAGKSYVI
                     LNMTENIDCEVFRRHRGLRLLALVEEVLPRHRSGHRGDWHISLSKPSEKEQHLLMTLV
                     GEQGVVPTQDVLSMLSGIRRSLEEIGIQNYSTTSSCQARATQVRSDYGTLFVVLVIIG
                     VICFIIIVLGLLYNCWQRRLPKLKHVSHGEELRFVENGCHDNPTLDVASDSQSEMQEK
                     QPSLNGGAINGPSSWSALMGSKRDPEDSDVFEEDTHL"
     exon            74..346
                     /gene="Podxl2"
                     /gene_synonym="RGD1305815"
                     /inference="alignment:Splign:2.1.0"
     exon            347..1140
                     /gene="Podxl2"
                     /gene_synonym="RGD1305815"
                     /inference="alignment:Splign:2.1.0"
     exon            1141..1215
                     /gene="Podxl2"
                     /gene_synonym="RGD1305815"
                     /inference="alignment:Splign:2.1.0"
     exon            1216..1372
                     /gene="Podxl2"
                     /gene_synonym="RGD1305815"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1434
                     /gene="Podxl2"
                     /gene_synonym="RGD1305815"
                     /inference="alignment:Splign:2.1.0"
     exon            1435..1614
                     /gene="Podxl2"
                     /gene_synonym="RGD1305815"
                     /inference="alignment:Splign:2.1.0"
     exon            1615..2034
                     /gene="Podxl2"
                     /gene_synonym="RGD1305815"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caacgctgca ccatggcccg gccgctgcgg gccgccggac tgccgccgcc gctgttgttg
       61 ctactggccg ctggagtttc cctgggtgcc tgtgcagtga ccatggatga gcctggccct
      121 gagggcctca cctccacatc cctgctggat ctgttgttgc ccactgactt tgagccactg
      181 gactcggagg agcccagtga ggccatgggt ctaggtgccg gcctagcccc gggctcaggc
      241 ttccccagtg aggacagcga ggagtcccgg ctcctgcagc caccacagta cttctgggaa
      301 gaggaggaac taaacggctc cagcctggac ctgggtccca ctgcagacta cgtcttccca
      361 gacctgactg agaaggtggc ttccatggaa gacccagggc aggctccaga cctgccaaac
      421 ctcccctcca tcctgcccaa gatggatctc gctgagcctc cctggcatat gcctctggaa
      481 gaggaagagg aagaggagga agaggaggag gaagaggaaa gggaggaaga ggagagggag
      541 aaggaagaag cagaggagga ggaggaagaa gagctgctcc ctgtgagcgg gtccccagga
      601 gccaccacac aggcccatgc cccttcacct agcaccagca gcaccagcag ccagagtcct
      661 ggggccacca gacacaggca ggatgattct ggggaccagg ccacatcagg aatagaggtg
      721 gaaagcagtg tgaaacccac cttgtcagtg ccctcagtca ccccaagtac agtggccctg
      781 ggggttcaga actacagcca ggaatctggg ggcactgagt ggccaacggg ggggctgggg
      841 gtacagtctg aggttcccca gggagctggt gaggaggcca cagtgggagc agctgactat
      901 gatggccagc agggggcact gccatctact tcactcccac aaacagtgcc tccaagtggg
      961 actgaggtcc ccggtgaggg tcccctttac cccagaaccc cagactcttt cccacctgga
     1021 ccccaagaca cagagtcaac cccttcctct gctacctggg gacaagaagg tctcagtgag
     1081 cagcccctgg agggtcagac agctgaagct cactcactaa caccgtggga ctctactcag
     1141 gtgatctgca aggattggag caacctggcc gggaagagct acgtcatcct gaacatgaca
     1201 gagaacatag actgtgaagt gtttcggcga caccggggac tacggctcct agccctggtg
     1261 gaggaggttc tgccacgcca ccgtagtggc caccgtggag actggcatat ctctctcagc
     1321 aagcccagtg agaaagagca gcacctgctg atgactcttg taggagagca gggggtggta
     1381 cccactcaag atgtcctttc catgctcagt ggcatccgca ggagtctgga ggagattggc
     1441 atccagaact actccaccac cagcagctgc caggcacggg ccacccaggt gcgcagtgac
     1501 tacgggacac tctttgtagt gctggtgatc attggtgtca tctgcttcat catcattgtg
     1561 cttggcctac tctacaattg ttggcagcgt cggctgccca agctgaaaca cgtgtcgcac
     1621 ggtgaggagc ttcgcttcgt ggagaacggc tgccacgaca atcccacgct ggacgtggcc
     1681 agcgacagcc agtcggagat gcaggagaag cagcccagcc tgaacggtgg ggccatcaac
     1741 ggcccgagca gctggagcgc gctcatgggc agcaagcgcg accctgagga ctctgacgtg
     1801 ttcgaggagg acactcacct gtgagcgccg ggccacgggc gcgagactgc cagacgctac
     1861 ggccccgcgc ccctcccgtc cctccacgcg ggtcactacg cttccccacc gcagcaggcg
     1921 accgaggcgc agctcccacc ccgccccgcc cggccccgag cgcttgcccg aggccagcgc
     1981 gctccccgcg cccggactcc attaaagccg ccaacacgcg cgggccgctc tgcc
//
