LOCUS       NM_001421023            3026 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus podocan (Podn), mRNA.
ACCESSION   NM_001421023 XM_039111161
VERSION     NM_001421023.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3026)
  AUTHORS   Barallobre-Barreiro,J., Oklu,R., Lynch,M., Fava,M., Baig,F.,
            Yin,X., Barwari,T., Potier,D.N., Albadawi,H., Jahangiri,M.,
            Porter,K.E., Watkins,M.T., Misra,S., Stoughton,J. and Mayr,M.
  TITLE     Extracellular matrix remodelling in response to venous
            hypertension: proteomics of human varicose veins
  JOURNAL   Cardiovasc Res 110 (3), 419-430 (2016)
   PUBMED   27068509
REFERENCE   2  (bases 1 to 3026)
  AUTHORS   Didangelos,A., Yin,X., Mandal,K., Baumert,M., Jahangiri,M. and
            Mayr,M.
  TITLE     Proteomics characterization of extracellular space components in
            the human aorta
  JOURNAL   Mol Cell Proteomics 9 (9), 2048-2062 (2010)
   PUBMED   20551380
REFERENCE   3  (bases 1 to 3026)
  AUTHORS   Shimizu-Hirota,R., Sasamura,H., Kuroda,M., Kobayashi,E. and
            Saruta,T.
  TITLE     Functional characterization of podocan, a member of a new class in
            the small leucine-rich repeat protein family
  JOURNAL   FEBS Lett 563 (1-3), 69-74 (2004)
   PUBMED   15063725
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On May 10, 2023 this sequence version replaced XM_039111161.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643291.15488.1,
                                           SRR26643290.19906.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN14984027,
                                           SAMN16676784 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                JAXUCZ010000005.1  128024973-128025057 c
            86-201              JAXUCZ010000005.1  128023067-128023182 c
            202-262             JAXUCZ010000005.1  128020545-128020605 c
            263-582             JAXUCZ010000005.1  128017207-128017526 c
            583-676             JAXUCZ010000005.1  128015543-128015636 c
            677-741             JAXUCZ010000005.1  128014669-128014733 c
            742-851             JAXUCZ010000005.1  128013757-128013866 c
            852-1008            JAXUCZ010000005.1  128012973-128013129 c
            1009-1124           JAXUCZ010000005.1  128012582-128012697 c
            1125-1782           JAXUCZ010000005.1  128011691-128012348 c
            1783-1931           JAXUCZ010000005.1  128009218-128009366 c
            1932-2124           JAXUCZ010000005.1  128008125-128008317 c
            2125-3026           JAXUCZ010000005.1  128005348-128006249 c
FEATURES             Location/Qualifiers
     source          1..3026
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q34"
     gene            1..3026
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /note="podocan"
                     /db_xref="GeneID:102552895"
                     /db_xref="RGD:7545693"
     exon            1..85
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
     exon            86..201
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
     exon            202..262
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
     exon            263..582
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
     CDS             268..2109
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /codon_start=1
                     /product="podocan precursor"
                     /protein_id="NP_001407952.1"
                     /db_xref="GeneID:102552895"
                     /db_xref="RGD:7545693"
                     /translation="MAGSRGLPLLLLLPQLFLGPVLPVRAPVFGRSDTHTLSPEENEF
                     VEEEEQPVLVLSSEEPEPGRATIDCPRDCACSQEGVVDCGGIDLREFPGDLPEHTNHL
                     SLQNNQLEKIYPEELARLQRLETLNLQNNRLTSRGLPEEAFEHLTSLNYLYLANNKLT
                     LAPRFLPNALISVDFAANYLTKIYGLTFGQKPNLRSVYLHNNKLADAGLPDNMFNGSS
                     NVEILILSSNFLRHVPKHLPPALYKLHLKNNKLEKIPPGAFSELSNLRELYLQNNYLT
                     DEGLDNETFWKLSSLEYLDLSSNNLSRVPAGLPRSLVLLHLEKNVIQSVDADVLTPIR
                     NLEYLLLHSNQLQAKGIHPLAFQGLKRLHTVHLYNNALERVPSGLPRRVRTLMILHNQ
                     ITGIGREDFATTYFLEELNLSYNRITSPQMHRDAFRKLRLLRSLDLSGNRLQTLPPGL
                     PKNVHVLKVKRNELAALARGALAGMAKLRELYLTGNRLRSRALGPRAWVDLAGLQLLD
                     IAGNQLTEIPEGLPPSLEYLYLQNNKISAVPANAFDSTPNLKGIFLRFNKLAVGSVVE
                     SAFRRLKHLQVLDIEGNFEFGNVSKDRGHKDEEEEEEEEEDEEEETR"
     exon            583..676
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
     exon            677..741
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
     exon            742..851
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
     exon            852..1008
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
     exon            1009..1124
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
     exon            1125..1782
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
     exon            1783..1931
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
     exon            1932..2124
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
     exon            2125..3026
                     /gene="Podn"
                     /gene_synonym="LRRGT00160"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacttgaatg acaggagccg gcgcccgccg agcgcagcgg acaccaggga gcctgttctg
       61 cccacggcgc ggcgcgcagc ggcaggtgct ggcaggggcc agcagtatca gatcccctgg
      121 agctggggtt acaggcggtt gtgagtcatc ccagtgagtg ctgggctcag tcttctgcaa
      181 gcagagtgct gctcttaaca gataagcgtg tggattttta tggagataag ccaaaggtga
      241 gagaagaaaa ccagcctgtc cagcatcatg gccggcagca ggggcttgcc actcctgctg
      301 ctgttgcctc agctgttcct gggtcccgtg ctgcctgtga gggcacctgt gtttggccga
      361 agtgacaccc acaccctaag ccctgaggag aatgaatttg tggaggaaga ggagcagcca
      421 gtgctagtac tgagctctga ggagccagag cctggccggg ccaccatcga ctgtccccga
      481 gattgtgcct gctcccagga aggcgtcgtg gactgtggtg gcatcgacct gcgggagttt
      541 ccgggagacc tgcccgagca caccaatcat ctctctttgc agaacaacca gctggagaag
      601 atctaccccg aggaactggc tcggctgcag cggctggaga cgcttaacct acagaacaat
      661 cgcctgacat cccgagggct cccagaggag gcatttgagc atcttactag cctcaattac
      721 ctgtacctgg ccaacaacaa gctgacattg gcaccccgat tcctgccaaa cgccctgatc
      781 agtgtggact tcgctgccaa ttatctcact aagatctatg gactcacctt tggccaaaag
      841 ccaaatctga ggtccgtgta cctgcataac aacaagctag cagatgccgg gctgccagac
      901 aacatgttca acggctccag caatgtcgag atcctcatcc tgtccagcaa cttcctgcgc
      961 catgtgccca agcacctgcc acctgctctg tacaagctcc acctcaagaa caataagctg
     1021 gagaagatcc cccctggggc cttcagtgag ctgagtaacc tgcgggagct gtacctgcaa
     1081 aacaattacc tgaccgacga gggcctggac aacgagacct tttggaagct gtccagcctg
     1141 gagtacctgg acttgtccag caacaacctg tcgagggtcc cagcgggtct tccgcgcagc
     1201 ctagtcctgc tgcacctgga gaaaaatgtc atccagagtg tagacgctga tgtgctgaca
     1261 cccatccgca acctggaata cctgctgcta cacagcaacc agctgcaggc caagggcatc
     1321 cacccgctgg ccttccaggg cctcaagagg ctccacacgg tgcatctata caacaacgca
     1381 ctggaacgtg tgcccagcgg cctgccccgc cgagttcgca ccctcatgat cctgcacaac
     1441 cagattacag gcataggccg tgaggacttt gccaccacct acttcctgga agagctcaac
     1501 ctcagctaca accgcatcac cagcccacag atgcaccgag atgccttccg caagctacgc
     1561 ctgctgcgtt cacttgactt gtctggcaac cgcctgcaaa cactgcctcc gggcctgcct
     1621 aaaaatgtac acgtgctcaa ggtcaagcgt aatgagctgg ctgctctggc gcgtggggca
     1681 ctagctggca tggccaagct tcgggaactc tacctcacag gcaaccgact gcgaagccgg
     1741 gccctgggac cccgtgcctg ggtggacctt gctggtctgc agttgctgga cattgctggg
     1801 aatcagctca cagagatccc ggaggggctc cccccatcgc tggagtatct gtacctgcag
     1861 aataacaaga ttagcgctgt tcctgccaac gcctttgact ctactcccaa cctcaagggg
     1921 atctttctca ggttcaacaa gctggctgtg ggctccgtag tagaaagcgc cttccggagg
     1981 ctgaaacacc tgcaggtctt ggacattgaa ggcaactttg agtttggtaa cgtttccaag
     2041 gaccgaggcc acaaagatga ggaagaggaa gaagaggagg aggaggacga ggaagaggaa
     2101 acgagatagg acaaagtgac ccaggacgat ggactaccgg actcctttct gcagcccagg
     2161 cctgtgcccc atgagcgccc ccttctgaca cacccaacgc tgagcccaag aggcacccga
     2221 aagtcacggg ctgaacacag tctcgtgtcc caccccttcc agcaatgtgt cacacagtca
     2281 gacacgtgca gataccactt taccgccaac acccccagct tggccacgta gataagccag
     2341 ctgcatatga ccttccaaac tggctctctg cacaacctca cactgataca actcacacac
     2401 acacacacac acacacacac acacacacac acacacaccc tgacctcaga gtccacactg
     2461 gcctggtaca ctcaggcagc taccctctcc ctaattcact tacacagagt gacctatgct
     2521 accaaaagct cttgcttccg gccagttgtg gccgtacaca gttggccctg tgccttgtcc
     2581 tctggtccct ccctaggaga cgcagggttg tctccttgct ttgtggcggg gtgctttcca
     2641 ctttttgaga ctcaaaagct ggcttttgtt ttgtgctttc cctatgggga tttgaacctt
     2701 ctgccttcta ccatggcttc acctcctccc cgggtgctgg gcagtcctac tgctgggagc
     2761 cccttttggt tgtgccctgg caggaggtca caggcacttg agaacaacct caagaaggct
     2821 tgggagggga agaggcagca gtgcatggtg ggggttgggg tggggtggag cggcagcagc
     2881 tgccttggtc ttcagttctg cagggaagtt ctgggtacct ttggttttgt ttaaggagaa
     2941 aaaaatatat atgaagataa aaatctcaaa gctgattttt cctgttacag aaaaactaat
     3001 ataaagtatt atccctgccc ttgcaa
//
