LOCUS       XM_008769005            4505 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus patatin-like phospholipase domain
            containing 6 (Pnpla6), transcript variant X2, mRNA.
ACCESSION   XM_008769005
VERSION     XM_008769005.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008769005.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008769005.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4505
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4505
                     /gene="Pnpla6"
                     /note="patatin-like phospholipase domain containing 6;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 12 ESTs, 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 147 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:360753"
                     /db_xref="RGD:1564611"
     CDS             189..4259
                     /gene="Pnpla6"
                     /codon_start=1
                     /product="patatin-like phospholipase domain-containing
                     protein 6 isoform X2"
                     /protein_id="XP_008767227.2"
                     /db_xref="GeneID:360753"
                     /db_xref="RGD:1564611"
                     /translation="MGTPSHELNTTSSGSEVIRKALEEGLGRRICVAQPVPFVPQVLG
                     VMIGAGVAVLVTAVLILLVVRRLRVQKTPAPEGPRYRFRKRDKVLFYGRKIMRKVSQS
                     TSSLVDTSVSTTSRPRMKKKLKMLNIAKKILRIQKETPTLQRKEPPPSVLEADLTEGD
                     LANSHLPSEVLYMLKNVRVLGHFEKPLFLELCRHMVFQRLGQGDYVFRPGQPDASIYV
                     VQDGLLELCLPGPDGKECVVKEVVPGDSVNSLLSILDVITGHQHPQRTVSARAARDST
                     VLRLPVEAFSAVFTKYPESLVRVVQIIMVRLQRVTFLALHNYLGLTNELFSHEIQPLR
                     LFPSPGLPTRTSPVRGSKRVVSTSGTEDTPKETSGRPLDPTGAPLPGPAGDPVKPTSL
                     EAPSAPLLSRCISMPVDISGLQGGPRSDFDMAYERGRISVSLQEEASGGPQTASPRTP
                     TQELREQPAGACEYSFCEDESATGGCPFGPYQGRQTSSIFEAAKRELAKLMRIEDPSL
                     LNSRVLLHHAKAGTIIARQGDQDVSLHFVLWGCLHVYQRMIDKAEEVCLFVAQPGELV
                     GQLAVLTGEPLIFTLRAQRDCTFLRISKSDFYEIMRAQPSVVLSAAHTVAARMSPFVR
                     QMDFAIDWTAVEAGRALYRQGDRSDCTYIVLNGRLRSVIQRGSGKKELVGEYGRGDLI
                     GVVEALTRQPRATTVHAVRDTELAKLPEGTLGHIKRRYPQVVTRLIHLLSQKILGNLQ
                     QLQGPFPAGSGLSVPQHSELTNPASNLSTVAILPVCAEVPMMAFTLELQHALQAIGPT
                     LLLNSDIIRARLGASALDSIQEFRLSGWLAQQEDAHRIVLYQTDTSLTPWTVRCLRQA
                     DCILIVGLGDQEPTVGQLEQMLENTAVRALKQLVLLHREEGPGPTRTVEWLNMRSWCS
                     GHLHLRCPRRLFSRRSPAKLHELYEKVFSRRADRHSDFSRLARVLTGNTIALVLGGGG
                     ARGCSHIGVLKALEEAGVPVDLVGGTSIGSFIGALYAEERSASRTKQRAREWAKSMTS
                     VLEPVLDLTYPVTSMFTGSAFNRSIHRVFQDKQIEDLWLPYFNVTTDITASAMRVHKD
                     GCVWRYVRASASYCPYLPPLCDPKDGHLLVDGCYVNNVPADIARSMGAKTVIAIDVGS
                     QDETDLSTYGDSLSGWWLLWKRLNPWADKVKVPDMAEIQSRLAYVSCVRQLEVVKSSS
                     YCEYLRPSIDCFKTMDFGKFDQIYDVGYQYGKAVFGGWTRGEVIEKMLTDRRSTDLNE
                     SRRADILAFPSSGFTDLAEIVSRIEPPTSYVSDGCADGEESDCLTEYEEDAGPDCSRD
                     EGGSPEGASPSTASEVEEEKSTLRQRRFLPQETGAQ"
ORIGIN      
        1 ttgcaccgga ctacaactcc cggcgggctt gcggcacacc acgcgattct ctcttcgaga
       61 accgtgtgtg aggacgaaac tacgtttccc ggcatgcatc acgggatacc tagtctctgg
      121 gaaggtttag tcgctccccc cgcccccgta ggaggtggga aggaaacagg cattgaccca
      181 ttctgcagat ggggacaccg agtcacgagc tgaatacgac ctcctccggg tcagaggtga
      241 ttcgaaaggc cctggaggag ggcttggggc gacggatatg cgttgcccag cctgtgccgt
      301 tcgttccgca ggtgctgggc gtgatgatcg gggccggagt ggcggtgctg gtcaccgccg
      361 tactcatcct cttggtggtg cgaaggctac gggtgcaaaa aactccagcc ccggagggtc
      421 cccggtatcg gttccggaag cgggacaaag tgcttttcta tggccggaag attatgcgga
      481 aggtgtcaca atccacttct tccctggtgg acacatcagt ctccaccact tcccgacccc
      541 gcatgaagaa gaaactgaag atgcttaaca ttgccaagaa gatcttgcgg atccaaaagg
      601 agaccccgac cctacaacgg aaggagcccc caccttcagt gctggaggct gacctcacag
      661 agggtgacct ggccaattcc cacctaccct ctgaggtgct ctacatgctt aagaatgttc
      721 gggtgctggg tcactttgag aagccactct tcctggagct ctgccggcac atggttttcc
      781 agcgtcttgg gcagggggac tacgtttttc ggcctggtca gccagatgcc agcatctacg
      841 tggttcagga tgggctgctg gagctctgtc taccgggccc tgatgggaag gagtgcgtgg
      901 tgaaggaagt ggtccctgga gacagcgtca acagccttct gagcatcctt gatgtcatca
      961 cgggtcacca gcatccccag cggactgttt cggctcgggc tgcacgggac tccacagtgc
     1021 tgagactccc cgtggaagcc ttctcagccg tcttcaccaa gtaccctgag agtctggtgc
     1081 gagtagtgca gatcatcatg gtgaggctgc agagggtcac cttcctggcc cttcacaatt
     1141 acctgggtct gaccaatgaa ctcttcagcc acgagatcca gcccctacgc ttgttcccca
     1201 gccctggcct cccgacccga accagccctg tccgtggctc taaacgggta gtcagtacct
     1261 caggtaccga ggacaccccg aaggagacct ctggccggcc ccttgacccc actggagcgc
     1321 cactgcctgg acctgcaggg gatcctgtga agcccacatc cttagaagcg ccctcagccc
     1381 ccctactgag ccgctgcatc tccatgccag tggacatctc aggcttgcaa ggtggccctc
     1441 gttctgactt tgacatggcc tatgaacgtg gccggatatc tgtttccctt caagaagagg
     1501 cctctggagg ccctcagaca gcatccccta ggacccccac tcaggagctc cgggagcagc
     1561 cagcaggcgc ctgtgaatat agcttctgtg aggatgagtc agccacaggt ggatgtccct
     1621 ttgggcccta ccagggccgc cagacaagca gcatctttga ggctgcgaag agagaactag
     1681 ccaagctgat gcggattgag gacccctctc tactgaatag cagagtcttg ctacatcatg
     1741 ccaaagccgg caccatcata gctcgccagg gggaccagga tgtgagcctg cactttgtgc
     1801 tctggggctg cctgcatgtg taccaacgca tgattgacaa ggccgaggag gtgtgcctgt
     1861 ttgtggcaca gccaggggag ctggtggggc agctggcggt gctcaccggg gaacccctca
     1921 tcttcacact ccgtgcccaa agagactgca ccttcctccg gatctccaaa tccgacttct
     1981 atgagatcat gcgtgcacag cccagtgtgg tgctcagcgc agctcacacg gtggctgcta
     2041 ggatgtcccc cttcgtgcgc cagatggact ttgccattga ctggacagct gtggaggctg
     2101 gtcgcgcgct ctacaggcag ggcgaccgtt cagactgcac ctacattgta ctcaatgggc
     2161 gtctccgcag tgtcatccaa cgaggcagtg gcaagaagga gctagttggg gagtatggcc
     2221 gaggggatct cattggtgtg gtggaggcat tgacccggca gccacgggcc accactgtac
     2281 acgctgtgcg agacacagag ctggccaagc tccccgaggg caccttaggt cacatcaaac
     2341 gtcggtaccc acaggtcgtg actcgcctta ttcatctgct aagccagaaa attctgggca
     2401 atctgcagca gttgcaagga ccctttccag caggctccgg actcagtgtc ccgcagcact
     2461 cagagctgac caacccagcc agcaacctgt ccactgtggc tatcctccct gtgtgtgctg
     2521 aggtgcccat gatggccttt actctggaac ttcagcatgc cctgcaagct attggtccca
     2581 cgctcctcct taacagtgac atcatccggg cacgcctggg ggcttcagcg ctggatagca
     2641 ttcaagaatt ccggctgtca gggtggctgg ctcagcagga agatgcccat cgaattgtac
     2701 tctaccaaac tgacacgtcc ctgacgcctt ggaccgtccg ttgcctccgc caggccgact
     2761 gcatcctcat tgtgggcctg ggggaccagg aacccactgt cggtcagctg gaacaaatgc
     2821 tggagaacac tgccgtgcgt gccttgaagc agctggtttt gctgcaccgg gaggaaggcc
     2881 ctgggcccac gcgcactgta gagtggctca acatgcgcag ctggtgctct ggacacctgc
     2941 acctccgctg tcctcgccgc ctcttctcgc gtcgcagccc agctaaactt catgagctgt
     3001 atgagaaggt tttctccagg cgtgcagacc gtcacagcga cttctcccgc ctggcacgag
     3061 tgctcacagg aaacactatt gctctggtgc tgggtggagg cggggccagg ggctgctcgc
     3121 atattggggt gctgaaggca ttagaggagg caggggtccc agtcgacctt gtgggaggca
     3181 catctatagg ttccttcatt ggggccctgt atgccgagga acgcagcgcc agtcgtacca
     3241 aacagcgagc ccgggagtgg gccaagagca tgacttctgt actggagcct gtattggacc
     3301 tcacatatcc tgtcacctcc atgtttactg gctcggcctt taaccgaagt atccaccgtg
     3361 tcttccagga caagcagatc gaggacctgt ggctgcctta cttcaatgtg accacagaca
     3421 tcactgcatc cgccatgcgt gtccacaaag atggctgcgt gtggcgttac gtccgggcca
     3481 gtgcctccta ctgtccctac ctgcccccac tctgcgaccc caaggacggg cacctgctgg
     3541 tggacgggtg ttacgttaac aacgttccag cggatatcgc ccgcagcatg ggggccaaaa
     3601 cggtcattgc catcgacgtg ggaagccagg atgagacgga tctcagcacc tatggggaca
     3661 gcctgtctgg ctggtggttg ctgtggaaac ggctaaaccc ctgggcagac aaggtaaagg
     3721 ttccagacat ggctgagatc cagtcccgcc tggcgtatgt gtcctgtgtg cggcagctgg
     3781 aagttgtcaa gtctagttcc tattgcgagt accttcgtcc atccattgac tgcttcaaga
     3841 ccatggactt cgggaagttt gaccagatct atgatgtggg ttaccagtat gggaaggctg
     3901 tgtttggagg ctggacccgt ggtgaagtca ttgagaaaat gctcacagac cggaggtcta
     3961 cagaccttaa tgaaagtcgc cgtgcagata tacttgcctt cccgagctct ggcttcactg
     4021 acttggctga gatcgtgtcc cggattgagc ccccaacaag ctacgtctct gatggctgtg
     4081 ctgatgggga ggagtcggat tgcttgacag agtatgagga agatgcggga cctgactgct
     4141 caagggatga agggggctct cctgagggtg ccagccctag cactgcctca gaggtggaag
     4201 aggagaagtc cacactccgg caacgacgct ttctgcctca ggagactggg gctcagtagc
     4261 agatgcctga ggaccttgac agggaacccc ggttcctaga ctgggttgtg ggtgggcctg
     4321 tgggggagct cacactatta ttcctgctgc tatactgtga cactccctgg gccttccccc
     4381 ttggctccaa ggaccacaca ctggactgac ttgccctgtc cctaagggaa gggcaaaact
     4441 gcactgatga cctttgacca actatgttac cttcccccca ataaactctc acccctttcg
     4501 aagca
//
