LOCUS       NM_001419111            2895 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus PNMA family member 6E (Pnma6e), mRNA.
ACCESSION   NM_001419111 XM_039100395
VERSION     NM_001419111.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Mar 28, 2023 this sequence version replaced XM_039100395.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.33329.1,
                                           SRR26360186.853163.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-164               JAXUCZ010000021.1  156259808-156259971 c
            165-344             JAXUCZ010000021.1  156258720-156258899 c
            345-2895            JAXUCZ010000021.1  156254872-156257422 c
FEATURES             Location/Qualifiers
     source          1..2895
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq37"
     gene            1..2895
                     /gene="Pnma6e"
                     /note="PNMA family member 6E"
                     /db_xref="GeneID:103694532"
                     /db_xref="RGD:9254548"
     exon            1..164
                     /gene="Pnma6e"
                     /inference="alignment:Splign:2.1.0"
     exon            165..344
                     /gene="Pnma6e"
                     /inference="alignment:Splign:2.1.0"
     exon            345..2895
                     /gene="Pnma6e"
                     /inference="alignment:Splign:2.1.0"
     CDS             389..2671
                     /gene="Pnma6e"
                     /codon_start=1
                     /product="paraneoplastic antigen Ma6E"
                     /protein_id="NP_001406040.1"
                     /db_xref="GeneID:103694532"
                     /db_xref="RGD:9254548"
                     /translation="MLPPKFTAMALAILQDWCGWMGVNAQRSLLILGIPDDCGEEEFQ
                     EAVQAALRPLGRYRVLGKVFRKEIGAKVALVEFADNLNQSLIPQQIPNNRGSWSVIFL
                     PPVPEVESQDTFSFPAQAHGQALEGASGGVGVSGRSGTSVGEGHVDEIGAVGEAGGTA
                     EEGAADEARVSCKEGAGKAGGRAATPDSFLQEEGAVDEEGAEQERGAGETGRAVEGGA
                     AAEAGLSDEDGVEDEGGVIDEAEVIYEAGIIGEARLPGEGAMDEEDDVVEAGAARMSD
                     EEGAGGDMGVAGVIGGMSWVGAAGEVGAAGEGGVLEAGAGEEGSAGDEESGSDEGSAG
                     DEGSVDGGGAVGEAGAIGEDEAGAAGEARMSDEEGAAGDMGVAGIIGAVGLAGAAGEA
                     GGSGEEGAFDVAGGAHGAGTWTREWSQALQPILENMAYQELRHFTGMEEPGCGGQSFE
                     SWLDHANDMLYLWRHISERERRRRLVESLGGPALDLLCELLEEHPDTPAQDCLAALVQ
                     VFGNKDTVMTARLKFLTCSQRPQETLFAYVMRLEGLLQMAMEKGAIQPAMVDQARARQ
                     VLMRARPNQMLQNNLRRMRLERRPPGFVGLLRLVRETEAREAALAENAEAQEGEGVEV
                     HGGELDVQAALASVGVAEPAPAIREVLPTSEDAGQAAAAAAVQQAAGAAPDGDSATKA
                     DPDSGEAKAFPVTQRDDNASAPAGSGQAGPTEGPSVLESVAHEGEQEAEQPVTEGLKE
                     ESENEDGAWESSHPKSFLGK"
ORIGIN      
        1 ccttcgatgt ggagaggagg tttctgggag aaataggggt ttctgggagc tccttgggcg
       61 attgagagct tcacacgtct cttcgccttc tccgcatatg cgatttgaga catttgccct
      121 tgggattcct gaggacagca gagtggagga aagtgaacaa ccaggacctt gtagctgcca
      181 ggtggacaga gtttggtggt ggcatgttcg gggtgaggct gattggaaaa gctggtccct
      241 ggctgggggt ggagatgcag aaggcaaggc tgactggcat cctgggatga atatgaagac
      301 cagaaactct tagtggctac acttgaactg ctgtgtggag agaggctgag gaagagacta
      361 gtgcaatcag acacacccct gtctggtcat gttacctcct aagttcactg ctatggcact
      421 ggcgattctg caggactggt gtgggtggat gggtgtcaat gcccagcgct cactgcttat
      481 cctgggcatc cccgatgact gtggtgaaga agaatttcag gaggcagtgc aggctgccct
      541 caggcccctg ggcaggtacc gagtgcttgg caaagtcttc agaaaggaga ttggggcaaa
      601 ggtcgctttg gttgaattcg ctgacaattt aaaccaaagt ttgatccccc aacaaatacc
      661 aaataatagg gggtcctgga gtgtgatctt ccttcctcca gtccctgaag ttgagtcaca
      721 ggatacattc agtttccctg cacaggctca tgggcaagct ttggaagggg cttcaggtgg
      781 ggtaggagtt tcaggtaggt caggaacttc agttggggaa ggacatgtag atgagatagg
      841 agctgtgggt gaggcaggag gaacagctga ggaaggagct gcagatgagg caagagtgtc
      901 ttgcaaggag ggagcaggta aggcaggagg aagagctgcc actcctgact ccttcctaca
      961 ggaggaagga gctgtggatg aggaaggagc agagcaggag agaggagcag gtgagacagg
     1021 aagagcagtg gagggaggag ctgcagctga ggcaggcttg tcagatgagg acggagtaga
     1081 agatgaagga ggagtcatag atgaggctga agttatatat gaggcaggaa ttataggtga
     1141 agcacgactg ccaggtgagg gggctatgga tgaggaagat gatgtagttg aggcaggggc
     1201 tgccagaatg tctgatgagg aaggggctgg aggtgacatg ggggttgcag gtgttatagg
     1261 aggtatgagt tgggtgggag ctgcaggtga ggtgggagct gcaggagagg gaggagtttt
     1321 agaggcaggg gcaggtgaag aggggtctgc aggggatgag gagtctggga gcgatgaggg
     1381 ctctgcaggg gatgaaggat ctgtggatgg tggaggagct gtgggtgaag caggagctat
     1441 aggtgaggat gaggcaggag ctgcaggtga ggccagaatg tcagatgagg agggagctgc
     1501 aggggacatg ggagttgcag ggatcatagg agctgtagga ttggcaggag ctgcaggtga
     1561 ggcaggaggt tcaggtgagg aaggggcctt tgatgtggca ggaggggcac atggggctgg
     1621 aacctggacc cgagagtgga gccaagccct gcaacccatt ctggaaaaca tggcctatca
     1681 ggagctgaga cacttcactg ggatggaaga acctggctgt gggggtcagt cttttgagag
     1741 ctggctggac catgccaatg acatgcttta cctgtggcgt cacatatccg agagagagag
     1801 gaggcggcgg ctggtggaga gtttgggggg ccctgccctg gatctcctgt gtgagcttct
     1861 ggaagagcat ccagacaccc ctgctcagga ctgcctcgct gcactggtgc aggtgtttgg
     1921 caacaaggat accgtgatga cagcacgact caagttcctg acttgctccc agcggcctca
     1981 ggagaccctg tttgcctatg tgatgcgcct ggaaggtctg ctgcagatgg ccatggagaa
     2041 gggggccatc cagcctgcaa tggtggatca ggcgagggcc cggcaggtgc tgatgcgggc
     2101 caggcccaac cagatgctac agaacaacct gaggaggatg cggctggaga ggcggccacc
     2161 tggctttgtg gggttgctca ggcttgttcg ggagactgag gcacgggagg cagctctggc
     2221 tgaaaatgca gaagcccagg agggggaagg agtggaagtg catggtggtg agctggatgt
     2281 ccaggctgcc cttgccagtg ttggggttgc tgaacctgcc cctgccatta gagaggtcct
     2341 cccaaccagt gaagatgctg gccaggctgc tgctgctgct gctgttcagc aagctgctgg
     2401 ggctgctcct gatggtgata gtgccacaaa ggcagaccct gattctggtg aagctaaggc
     2461 cttccctgtc acccagagag atgataatgc gtcagcccct gctggctcag gccaggcagg
     2521 gcccactgag ggcccaagtg tgcttgagag tgtggcccat gaaggagagc aagaagcaga
     2581 gcagcctgta acagaggggc tgaaggaaga gtcagaaaat gaggatgggg catgggagtc
     2641 tagtcacccc aagtccttcc ttggcaaata ggctcagagg atctaggggc ttcctcctac
     2701 ctcagaatcc aagtcctaga ggtaggtaac gtaagcccag ggcttgtgct ttaccctaaa
     2761 agtagagcag ggcccagaaa aggttttgct cagccttaaa ccttaaacca gttccctccc
     2821 tcaacttccc aaggagtcct ggcccccacc actatctagt tacctaggtt gccctttatc
     2881 atgacagtgt tacct
//
