LOCUS       NM_001025274            4112 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus PNN interacting serine and arginine rich protein
            (Pnisr), mRNA.
ACCESSION   NM_001025274 XM_238393
VERSION     NM_001025274.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4112)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473962.1.
            
            On Sep 4, 2008 this sequence version replaced NM_001025274.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4112
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q21"
     gene            1..4112
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /note="PNN interacting serine and arginine rich protein"
                     /db_xref="GeneID:297942"
                     /db_xref="RGD:1307395"
     exon            1..94
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /inference="alignment:Splign:2.1.0"
     exon            95..195
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /inference="alignment:Splign:2.1.0"
     CDS             108..2552
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /note="serine/arginine-rich splicing factor 18; splicing
                     factor, arginine/serine-rich 18; PNN-interacting
                     serine/arginine-rich protein"
                     /codon_start=1
                     /product="arginine/serine-rich protein PNISR"
                     /protein_id="NP_001020445.2"
                     /db_xref="GeneID:297942"
                     /db_xref="RGD:1307395"
                     /translation="MWDQGGQPWQQWPLNQQQWMQSFQHQQDPSQIDWAALAQAWIAQ
                     REASGQQSIVEQPPGMMPNGQDMSSMESGPNNHGNFQGDSNFNRMWQPEWGMHQQPPH
                     PPPDQPWMPPTPGPMDIVPPSEDSNSQDSGEFAPDNRHIFNQNNHNFGGPPDNFAVGP
                     VNQFDYQHGAAFGPPQGGFHPPYWQPGPPGPPAPTQNRRERPPSFRDRQRSPIALPVK
                     QEPPQIDAVKRRTLPAWIREGLEKMEREKQKKLEKERMEQQRSQLSHKEKKAAEDAEG
                     GHGPRLPQRSKFDSDDEDEDAENLEAVSSGKVTRSPSPAPQEEHSEPEMTEEEKEYQM
                     MLLTKMLLTEILLDVTDEEIYYVAKDAHRKATKAPAKQLAQSSALASLTGLGGLGGYG
                     SGDSEDERSDRGSESSDTDDEELRHRIRQKQEAFWRKEKEQQLLQDKQMEEEKQQTER
                     VTKEMNEFIHREQNSLSLLEASEADGDTVNEKKRTPNEAPSVLEPKREHKGKEKERRS
                     RSGSSSSGSSSSNSRSSSSSSSVSSSSYSSSSGSSCTSSRSSSPKRKKRHSRSRSPTV
                     KARRSRSRSYSRRIKIDSSRTRVKLRDRRRSNRSSIERERRRNRSPSRDRRRSRSRSR
                     DRRTNRSSRSRSRDRRKIEDPRGNLSGNSHKHKGEAKEQDRKKERSRSVDKDRRKKDK
                     ERDREQDKRKEKQKREEKDFKFSSQDDRLKRKRESERTFCRSGSISVKVIRHDSRQDS
                     KKNATKDSKKHSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSMEKSQRSGKKASRKH
                     KSKSRSRSTTPPRRKR"
     exon            196..384
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /inference="alignment:Splign:2.1.0"
     exon            385..608
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /inference="alignment:Splign:2.1.0"
     exon            609..780
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /inference="alignment:Splign:2.1.0"
     exon            781..971
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /inference="alignment:Splign:2.1.0"
     exon            972..1109
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..1209
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /inference="alignment:Splign:2.1.0"
     exon            1210..1263
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /inference="alignment:Splign:2.1.0"
     exon            1264..1434
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /inference="alignment:Splign:2.1.0"
     exon            1435..2521
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /inference="alignment:Splign:2.1.0"
     exon            2522..4112
                     /gene="Pnisr"
                     /gene_synonym="RGD1307395; Sfrs18; Srsf18"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 catcttgtct tgttcatgaa gaagtagaag catcgaaagg gttggagaga attacaggaa
       61 cggtggcgac aacggtattc cggaatcgga gcggaggaac ttaaaggatg tgggatcaag
      121 gaggacaacc ttggcagcaa tggcccttga accagcaaca gtggatgcag tcattccagc
      181 accagcaaga tccaagccag attgactggg ctgctttggc ccaagcttgg attgcacaaa
      241 gagaagcctc aggacagcaa agcatcgtag aacaaccacc aggaatgatg ccaaatggac
      301 aggatatgtc ttcaatggag tctggtccca ataaccatgg aaattttcaa ggggattcaa
      361 attttaacag aatgtggcaa ccagaatggg gaatgcatca gcagccccca cacccccctc
      421 cagatcagcc atggatgcca ccaacaccag gcccaatgga cattgttcct ccttctgaag
      481 acagcaacag tcaggacagt ggggaatttg cccctgacaa caggcatata tttaaccaga
      541 acaatcacaa ctttggtgga ccacctgata attttgcagt ggggccggtg aaccagtttg
      601 actatcagca tggggctgct tttggtccac cacaaggtgg atttcatcct ccttattggc
      661 aaccaggacc tccaggacca ccagcaccca cacagaaccg aagagagcgg ccaccatcct
      721 tccgggaccg acagcgctca cctattgcac ttccagtgaa gcaggaacct ccacagattg
      781 atgcagtgaa acgcaggact ctcccagcct ggattcgaga aggcctggag aagatggagc
      841 gtgaaaagca gaagaaatta gagaaagaga gaatggagca gcagcgctca cagctgtcac
      901 acaaagaaaa gaaggccgcc gaagatgctg aaggaggaca tggtcctcgt ttaccccaaa
      961 gaagtaaatt tgatagtgat gacgaggatg aagatgctga aaacctagag gctgtcagca
     1021 gtgggaaagt caccagaagt ccatctccag ctccccagga ggagcacagt gagccagaga
     1081 tgacggagga ggagaaggag tatcagatga tgttattgac aaaaatgctt ctaactgaaa
     1141 ttcttctgga tgtcacagat gaagaaattt attacgtagc taaagatgca catcggaaag
     1201 caacgaaagc tcctgcaaaa cagctggcac agtccagtgc actggcctcc ctcaccggcc
     1261 tcggtggact gggtggttat ggatcaggag acagtgaaga tgagaggagt gacagaggtt
     1321 ctgagtcatc tgatactgat gatgaagaat tacggcaccg aatccggcaa aaacaagaag
     1381 ctttttggag aaaagagaaa gagcagcagc tattacaaga taaacagatg gaagaagaaa
     1441 agcaacaaac agaaagggtt acaaaagaga tgaatgaatt tattcacaga gagcaaaata
     1501 gtttatcact tctagaagca agtgaagcag acggtgatac ggttaatgaa aagaaaagaa
     1561 ctccaaatga agctccgtca gttttagagc ccaaaagaga gcacaaaggg aaagagaagg
     1621 agcggaggag taggtcaggc agcagcagta gcggcagctc cagtagcaac agcaggagca
     1681 gcagcagtag cagctccgtg tccagttctt cctacagctc cagctcaggc agcagctgca
     1741 cgtcctctcg ctcctcctct cctaaaagga aaaagagaca cagtaggagc aggtctccca
     1801 cagtgaaagc tagacggagc aggagcagga gctactctcg cagaattaaa atagacagca
     1861 gcaggactag ggtgaagctg agagatagga ggagatctaa tagaagtagc attgaaagag
     1921 aaagacgaag aaaccggagc ccttcccgag acagacgtag aagcagaagt cgctcaaggg
     1981 atagacgaac caatcgttcc agtcgcagta gaagtcgaga taggcgtaaa attgaggatc
     2041 cacgtggaaa tcttagtggg aacagtcata agcataaagg tgaggctaaa gaacaagaca
     2101 ggaaaaagga gaggagtcga agtgtagata aggacaggag aaagaaagac aaggaaaggg
     2161 accgtgaaca ggataaaaga aaagaaaaac agaaaaggga agaaaaagat tttaaattca
     2221 gtagtcagga tgatcggtta aaacggaagc gagaaagtga gagaactttc tgtaggagtg
     2281 gttctatatc tgttaaagtc ataagacacg actctagaca ggatagtaag aaaaatgcaa
     2341 ccaaagatag taaaaagcat tcaggttctg attctagtgg aaggagcagt tctgaatccc
     2401 ccggaagtag caaagaaaag aaggctaaga agcctaaaca tagtcggtcg cgctccatgg
     2461 agaaatctca aaggtctggt aagaaggcaa gccgcaaaca caagtctaag tcccgatcaa
     2521 gatcaacaac ccctccccgt cgtaagcgct gaggaatgac gtggcaagaa tgccatgatg
     2581 ccatttttaa aaattccatg agtttaaggg cttgtctcat tatagaggca cattgtggct
     2641 gtgtaggtga acccagattt tttttttcta attgtgtaaa taggtgtctt tttccaaatg
     2701 ctgctccaag ttacttaata ggatttcttt gtattacatt tttttcaaga aatagtactt
     2761 aataagacta taaatatgcc attctctttc agctgtaatg ttctcaaaat tattcttgaa
     2821 tgtactgtga tgtcaataaa gctctttagt tcatttttgt taaactcttg caccttaatt
     2881 ttatgatttt aatctaagga acatactttt ataaaaaggc agctgaagtt ttgtataaca
     2941 ggttttaaaa gttactccca tcttccccaa agaaaatggt tttaacaaca gtttgtcaaa
     3001 gtttgtaaat tgtgcccatg gacttttgtc aaattccaat tttaacagtg tgggaaaggg
     3061 ccagaaaatg accttacttt tctttgaagt catctgatca gctttctaaa cttttttggg
     3121 gggtggaggg ggtgttcaag taatatatat tctctgtata agatgtgatt cactcctgta
     3181 aaatgaaatt gctggaaaca atcaggccat tacaccagta gagttatttg taataactat
     3241 ttgacactaa tagtctgaaa ctatatagtc actcctgttt tacttgcgta acaccttggg
     3301 ggtacccatt aacaaataag acttaggatt caatatattt tatattttaa aaatataaca
     3361 tgacctcagc ttaatggagg aatactgtat tatgcaggat tgtgtcaatt acataacatt
     3421 aaaatggtct gattttctca gtttcccaaa accacagcta gtgaatggtc cagaatgagt
     3481 cacggcttaa tgaatagtag gcatttgcca agtgtccagc tgctccaggg tctgagtttt
     3541 ttaagatgat acactcaaac agtgatagct gaatctctgg aaacaacact tttcaaattt
     3601 tctcttaaaa aagagaagtg caagtgcaga acacagaaga caaagtatta tgctttctta
     3661 ccagcaatag ttcatttaaa ataatgccag gcttttgcca agatcagtgt tccctcaaaa
     3721 tgaagacaga aatagatttg tttgtgcatt cttgtacctc gacatagcat cttaattttg
     3781 agcagttatg catttatcta aaggaaataa atctgtgaat aaatgcatgt ttaccaaaat
     3841 ggctgtttac agtgcattta gttacaatat ttataaagtt gccatttcag agaataagta
     3901 gtttggagtt ctatacagtt tagtcatcag taacatctgg agacaaatgt gcaatatttt
     3961 ttatgtaggt gagctaacac agtgtatcta attgaagaat tctgattaat ttgtaataga
     4021 taagttgtat aaaattttca taccttaaag tgttttagat caatcttcaa ggtgaagtat
     4081 tattttcaaa ataaaattct aatgaaaaat tc
//
