LOCUS       XM_039082399            5577 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PML nuclear body scaffold (Pml),
            transcript variant X1, mRNA.
ACCESSION   XM_039082399
VERSION     XM_039082399.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5577
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5577
                     /gene="Pml"
                     /note="PML nuclear body scaffold; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 26
                     ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     15 samples with support for all annotated introns"
                     /db_xref="GeneID:315713"
                     /db_xref="RGD:1562602"
     CDS             246..3023
                     /gene="Pml"
                     /codon_start=1
                     /product="protein PML isoform X1"
                     /protein_id="XP_038938327.1"
                     /db_xref="GeneID:315713"
                     /db_xref="RGD:1562602"
                     /translation="MPPPEEPSEDHEHSQSPAEQAIKEEFQFLRCPGCQTQAKCPKLL
                     PCLHTLCSGCLEAPGLQCPICQAPGSANANAEALDNVFFESLQRRLAVFRQIVDAQAA
                     CTRCKELADFWCFECEQLMCGKCFDAHQWYLKHEARPLAELRDNSVREFLDSTRKSNI
                     FCSNTNHRTPAQTNVIMQSPFILEEMTDPHSTIPPQRSACLLPTNSKPLQVYFIYCRG
                     CAKPLCCECALLDRNHSHLQCEIGKEIQQLHEELGTMTQALEEQGRTFDSAHAQMHSA
                     IGQLDDARSDTEKQIRARVRQVIEHVQAQERELLEAVNVRYQRDYQEIAGQLGHLEAV
                     LQRIRTGGALVKRMKLYASEQEVLDMHGFLRKALCRLRQEEPQNHKVQLRTSGFEEFK
                     LCLQDLVSFITQRTDVAVAGRASPEAASTHPEAASAQPEAASTHPEAASAQPEAASAH
                     PESASTPGNSTDLEQPKEVQRAQAQAMELSKTQPVAMVKSVPGAHPVPVYAFSMQGPT
                     YREEASQTVSPMKRKCCHIDCCRKIIKMESTDENEDRLSTSSPEQPRPSTSKAISPPH
                     PDGTSSTESTIPEKETPLPNNNHVASDAGETEERIVVISSSEDSDAENLPSHELDDSS
                     SESSSIQLEGPNSLKALDESLAEPHLEDRTLVFFDLKIDNETQKISQLAAVNRESKFR
                     VLIQPEAFSVYSKAVSLESGLQHFLSFLNSMHRPLLACPRLWGPGLPIFFQALNDINK
                     LWEFQDAISGFLAVLPLIQERIPSASSFKLRNLAKTYLARNMSERSALAAVLAMRDLC
                     CLLEVSPGLQLAQHIYSFSSLQCFASLQPLIQAQVLPQPEARLLALHNVSFLELLTAY
                     RSNRQEGLKKYVHYLSLQTTPSSASTQIAQFLQALSAYMDGQLEGHIPAGAEGTALSL
                     SGRAENKGCLA"
ORIGIN      
        1 gggatccatg cccgccgccc cacagcaccc cctgcgctgg gaggaccgaa tggcgggagc
       61 acagtttggg ggatgtggcc ttggttctaa actaaagcat cttgaggcgt cctgaccact
      121 tccttcctga aggaaacaaa cccaatccag aaatcgaaac tgaaccaggc tctacgcaga
      181 aggcgcctgc accctctgga tctctctgtc agcaactgga tcctgccctg atccccacgc
      241 ccaccatgcc tcccccagag gaaccctccg aagaccatga acacagccaa agccccgcgg
      301 agcaagccat aaaggaggaa tttcagtttc tgcgctgccc gggctgccag acccaagcca
      361 agtgccccaa actgctgcct tgcctgcaca cgctatgctc cggatgcctg gaggcgcccg
      421 gcctgcaatg cccgatctgc caggcaccgg ggtcggccaa tgctaatgcg gaggccctgg
      481 ataacgtgtt cttcgagagc ctgcagcggc gcctggcggt gttccggcag attgtggatg
      541 cgcaggctgc gtgcactcgc tgcaaagagt tggctgactt ctggtgtttc gagtgtgaac
      601 agctcatgtg tggcaagtgc tttgatgcac accagtggta cctcaaacac gaggcccggc
      661 ccctggccga gctccgcgac aactcagtgc gcgaattcct cgacagtact cgcaagtcca
      721 acatcttctg ctccaatacc aaccaccgca ctcctgcgca gactaacgtg ataatgcagt
      781 cccccttcat actagaggag atgactgatc cccactccac aataccacca cagagaagtg
      841 cttgccttct tcctacgaac tctaagccac ttcaagttta cttcatctac tgccgaggct
      901 gcgccaagcc tctgtgttgt gaatgcgcgc ttctggaccg caaccacagc catctccagt
      961 gtgaaattgg taaggagatc cagcagctgc atgaggagct gggcaccatg acgcaggctc
     1021 tggaggagca gggcagaacc ttcgacagtg cccatgcaca gatgcactca gccataggcc
     1081 agttggatga cgcacgctca gacactgaga agcagatccg cgcacgcgtg cgccaggtga
     1141 tagaacacgt gcaggctcag gagcgcgagt tgctcgaggc ggtgaatgtg cgctaccagc
     1201 gcgactacca ggaaatagct ggccagctgg gccacctgga agctgtgctg cagcgcatcc
     1261 gcactggtgg ggcgctggtc aagaggatga agctctacgc ctccgaacag gaggtgctgg
     1321 atatgcatgg ctttctgcgc aaggcactct gtcgcttgcg ccaggaggag cctcagaatc
     1381 acaaagtcca gctgcgcacc agcggcttcg aggagttcaa gttgtgcctg caggacctcg
     1441 tctccttcat cacccagagg acagatgtag ctgtagctgg gagagccagc ccagaggcag
     1501 ccagcactca cccagaggca gccagcgctc agccagaggc agccagcact cacccagagg
     1561 cagccagcgc tcagccagag gcagccagcg ctcacccaga gtcagccagc actcctggga
     1621 actcgactga ccttgagcag cccaaggaag tgcagagggc acaggctcag gccatggagc
     1681 tgtctaagac ccaacctgtg gctatggtaa aatcagtacc tggagcacac cctgtaccag
     1741 tgtatgcctt ctctatgcaa ggccccacgt acagagagga ggcctctcag acagtcagcc
     1801 ccatgaagag gaagtgctgc cacatagatt gctgcagaaa gattatcaag atggagtcca
     1861 cggatgagaa cgaggacagg ttgtcgacaa gctcccctga gcagcctagg cccagcactt
     1921 ccaaggccat ctcacctccc catccggatg ggacttccag cactgagagc accatccctg
     1981 aaaaagagac acccctgccc aacaacaacc atgtggccag tgatgcaggg gaaacagagg
     2041 agcgaatcgt agtgatcagc agctcagagg actcagatgc cgagaatctg ccctcccacg
     2101 agctggacga cagcagcagt gagtccagta gcatccagct ggagggcccc aattccctca
     2161 aggccttgga tgagagcctt gctgaacccc acttagaaga caggaccctg gttttcttcg
     2221 acctcaagat tgataatgaa acccagaaaa ttagccaact ggctgcggtg aaccgggaaa
     2281 gcaagttccg tgtgctcatc cagcccgagg ccttcagcgt ctactctaag gccgtctccc
     2341 tggagtccgg gctgcagcac ttcctcagct tcctcaactc catgcaccgt cccctcttgg
     2401 catgtcctag gctgtggggg cccggactcc ccatcttctt ccaggccctg aacgacatta
     2461 acaaactgtg ggaattccag gacgccatct cggggttctt ggctgtgttg cccctcatcc
     2521 aggaacgcat acccagcgcc agcagcttca aacttaggaa cctagcgaag acctacctgg
     2581 cgagaaacat gagcgaacgg agtgccttgg ctgctgtgct ggccatgaga gatctgtgct
     2641 gcctccttga ggtctcccca ggtctgcagc tggcccagca tatctactcc ttcagtagct
     2701 tacagtgctt tgcttccctg cagcccctaa ttcaggcaca ggtcctgccc cagcctgagg
     2761 cccgcctgct ggccctccac aatgtgagct tcctagaatt gctgaccgca taccgcagca
     2821 accggcaaga gggcttgaag aagtatgtcc actatctgag cctgcagacc accccatcat
     2881 cagcttccac ccagattgcc caattcctgc aggctctgag tgcctacatg gatggacagt
     2941 tggaagggca catccctgct ggggcagaag gcactgctct ttctctctct ggcagagctg
     3001 aaaataaggg atgcctggcc tagccgctca gcacagaagg agggctgtct ctgagccagg
     3061 ccccaccctt cactacattc ccaggtcccc gtcatttagt tcagaacagg tgtcctttct
     3121 ctgggaccaa actcaatttt ctctaaagtc cctgcagcgg acatgaaagg taccccgggc
     3181 ctagatctcc ctttcagaag ccagaaccag gaagggttgc ataaagaagg catgatttct
     3241 gggctcccaa ggcccccagt caccacctac cactaccatg ggtggccttg cagctctccc
     3301 tggatgctca atccgtgtcc caagtgacct gctgatagcc cacagacaat actttaaggt
     3361 ggtaccaacc gctataccag cagccccatg agcactcaaa gtgcctttcg aaccaaatcg
     3421 ccctcgagaa tttgggttct ctcagcccca actgaccaga ggccaactgc gttcagttct
     3481 atttttctta aagtactttt gttctaaagg ggccttgcag cagcagaaag tcaggaactg
     3541 tcgatccacc catgcccgtt tttagtcctc ggttcatcaa gccaccagac tcctccctgc
     3601 actcagccct tccaaggggc atctgtggag cacgggcacc tcaagcttgg gatggcgaac
     3661 ccgtgggctt taccgaaggt ctccggaatc tctggagcag ggcctgtagt gctaacacgt
     3721 tctctgggtg gttctgcatg ctcaattctg agcatgactg ctgcctcaga ccatccccct
     3781 aagggcagca gagaaaggcc ctggccttgc acattgagga tgactaggaa agggccagaa
     3841 ccccagtgtt ctctgaggtg agctggctga cctgcggtgt tatctcagcc cccacacagc
     3901 cagccctgcc atcctggact ttcagggtca gacagcaggt tcactgggac aacaggtaac
     3961 ttggagccca gctctcattt tgagccattg gtccctggcc gcatggccat cgtgggggtc
     4021 agttgttccc tgcggttgtt gtgctgctgc tgctactgct gctgctgtcc tcctcaccct
     4081 gacccactct tggttgctcc tatggtgttt tccacgtagc ccagagtgcc cgtgtttgca
     4141 tcttgaggcc tccactttca tatgggtgat gtctgcgtgc ccacacctct gactcatcct
     4201 gtgggtgttc taaggcgatg tttcctcaac cttcccaatg ctttgaccct ttaatactca
     4261 ggttgcggtg gcccccaacc ataaaatgat tttgttgctg cttcataact gtaattttgc
     4321 tactgtccat gaactgtaat gaaagcatct gatatgcgac ccctatgaaa gggttgtttg
     4381 acccccagat gggtcaacag caggttgaga actgctgctc taaggcattc tgcagacgct
     4441 cattcctacc acagtaaggc tgaactctgg aaactatgca ttagagctct ggttctgtgt
     4501 ggggataagg gtgggagggg aaaggagttt gagaccctcg cctggctgta ctggcaaggc
     4561 agtgcggggc cgtgtcttat accttgccct tgtcctatcc ctgaactaaa cagggcccac
     4621 tgagtccctg cctcactagg ttgcttgtct tcagctgctg atagcttagt gacagaagga
     4681 agccccgccc tgtcactgct gtcacagcct ttagtaaaca tgtgaatcct gaaaccctag
     4741 ctcttctcat ccctccttcc ctagaggagc ctttgaagtg ccttttttcc tgaggacaaa
     4801 atgctctccc aggcatgggt gagcaggtaa ttgcccaact cagctttggg aaaagtcttt
     4861 cagagtctgg cagagctgag catctccttg ttcagagcta aggacatgaa tcctctattt
     4921 caagtaggga agcctaggtg gacttccctc agggtggctt ccaaaaggga gaggcatcaa
     4981 cttcaaggat tgcctcccaa aggaggcacg aaccagagac caggacctgc aggcacttcg
     5041 ctgctggcct cccccgtttt caagtttcta gagctggcaa taaaatccga taaattgaaa
     5101 gtgaggagca gcgtaggaaa ttggcaatgt gtggtccctc tgttgtcttt gatatcctgg
     5161 atggagctta gctcacaact ttcaaagctt cagtgcacag catactaggg gatcagttcc
     5221 tgggctgggt aagctgccag gcttgttcag caccaatgta ctcacttcct gtcccagatg
     5281 cccaagttcc acttccagag ctttagtctc tcagcttgac ctttcgacca aaatatatcg
     5341 aagtttagct gcgtgtgcca cattttacat ttttgtcaag atttacccac agacacagca
     5401 accaacacct tatttggtct gggagttggg attcagtttt tggtagattg tggccctgat
     5461 ctggtactcc taactccctg gtcctcaggc agctcctctg taaagtgagg taatgtatgt
     5521 tatattttta cttcatgaga tctttgctgg aattaaaaag aagagtagtg catgtga
//
