LOCUS       NM_134393               3282 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus polyamine modulated factor 1 binding protein 1
            (Pmfbp1), mRNA.
ACCESSION   NM_134393 XM_008772469
VERSION     NM_134393.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3282)
  AUTHORS   Zhu,F., Liu,C., Wang,F., Yang,X., Zhang,J., Wu,H., Zhang,Z., He,X.,
            Zhang,Z., Zhou,P., Wei,Z., Shang,Y., Wang,L., Zhang,R.,
            Ouyang,Y.C., Sun,Q.Y., Cao,Y. and Li,W.
  TITLE     Mutations in PMFBP1 Cause Acephalic Spermatozoa Syndrome
  JOURNAL   Am J Hum Genet 103 (2), 188-199 (2018)
   PUBMED   30032984
REFERENCE   2  (bases 1 to 3282)
  AUTHORS   Petersen,C., Aumuller,G., Bahrami,M. and Hoyer-Fender,S.
  TITLE     Molecular cloning of Odf3 encoding a novel coiled-coil protein of
            sperm tail outer dense fibers
  JOURNAL   Mol Reprod Dev 61 (1), 102-112 (2002)
   PUBMED   11774381
REFERENCE   3  (bases 1 to 3282)
  AUTHORS   Ohuchi,J., Arai,T., Kon,Y., Asano,A., Yamauchi,H. and Watanabe,T.
  TITLE     Characterization of a novel gene, sperm-tail-associated protein
            (Stap), in mouse post-meiotic testicular germ cells
  JOURNAL   Mol Reprod Dev 59 (4), 350-358 (2001)
   PUBMED   11468771
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On or before Aug 2, 2021 this sequence version replaced
            XM_008772469.3, NM_134393.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF092090.2, SRR26643293.79860.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-120               JAXUCZ010000019.1  54368995-54369114
            121-181             JAXUCZ010000019.1  54369590-54369650
            182-430             JAXUCZ010000019.1  54386699-54386947
            431-652             JAXUCZ010000019.1  54389867-54390088
            653-823             JAXUCZ010000019.1  54396567-54396737
            824-934             JAXUCZ010000019.1  54397247-54397357
            935-1061            JAXUCZ010000019.1  54400759-54400885
            1062-1219           JAXUCZ010000019.1  54400968-54401125
            1220-1460           JAXUCZ010000019.1  54402534-54402774
            1461-1650           JAXUCZ010000019.1  54404972-54405161
            1651-1804           JAXUCZ010000019.1  54405322-54405475
            1805-1972           JAXUCZ010000019.1  54406392-54406559
            1973-2110           JAXUCZ010000019.1  54406806-54406943
            2111-2275           JAXUCZ010000019.1  54411253-54411417
            2276-2443           JAXUCZ010000019.1  54411944-54412111
            2444-2611           JAXUCZ010000019.1  54412440-54412607
            2612-2715           JAXUCZ010000019.1  54413334-54413437
            2716-2790           JAXUCZ010000019.1  54413865-54413939
            2791-3029           JAXUCZ010000019.1  54416403-54416641
            3030-3282           JAXUCZ010000019.1  54417153-54417405
FEATURES             Location/Qualifiers
     source          1..3282
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..3282
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /note="polyamine modulated factor 1 binding protein 1"
                     /db_xref="GeneID:171414"
                     /db_xref="RGD:621677"
     exon            1..120
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            121..181
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     CDS             131..3046
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /note="sperm tail associated protein; PMF-1-binding
                     protein; outer dense fiber protein 3; outer dense fiber
                     ODF3"
                     /codon_start=1
                     /product="polyamine-modulated factor 1-binding protein 1"
                     /protein_id="NP_599220.2"
                     /db_xref="GeneID:171414"
                     /db_xref="RGD:621677"
                     /translation="MLKLKGEFRTAKGLKDENKKQAQTLVFTDNQVEFKSNKQYHLRQ
                     LQQLKKKLLTLQQELEIRTQELQASYRSLLQYQSILEKQTSDLLVLHHHCKLKEDEVI
                     LYEEEMGSHSKNTGEKLHLAQEQLALAGDKIVSLERSLNLYRDKYQTSLSNIELLECQ
                     VKMLEEELSGLICQDPENKGDHSKVRIYTSPCMIQEHQETLKRLSEVWQKVSEQDDLI
                     QELRNKLACSNSLVLEREEALIKLRADFASYTATHRHPPTSSEDCEDITKILKYLQEQ
                     KDSQCLHVEEYQNLVKDLRLELEAVSEQKKKIMKDMMKLELDLHGLREETSCVIEKKD
                     KETVFLQYRLQDLQQQYTESQKLSLKKDKLLQDKDERLNELEKKLTQVQCLFLEKETE
                     LEKLQSTTKELDANLQEVRQSTSKIDNEGLRSEIQKLKESLEEAREQLRVSDQNLSQC
                     KDEAHLSANNLEDAHRKLENCLLQDKRKDDVIKDLQSQLQKLQKESSETEEERKNNRQ
                     QLLELSSELNEGQRRLSSAEKEKSLLQKTLDEEEKKIDELLHGAKVSEQKQRELTNSL
                     SKLQDELAETKRLLEEKREQLRKSKDQEKALEEEIEALRQESKKKEKMAKEQLRKLEE
                     EKENLQAELSSCSSQLDSSINKYNNSQKVIQELNTEIARQKDSIMILQTQLDSAIQKE
                     KNCFQNMVSKETYEELLRKSGTCQDDLTQALEKLTQATSETKSLQRNLQQTQERKAQL
                     EDEIMAYEERMKKLNMELKKLQGFQQQSELEVHNFDKKLEEMGNQVLQWQRQHQSDLK
                     MLAAKETQLREFQEEMTALKENLLADEKEPSLMPSKPAPKENYRHHRENDQIMCNVEQ
                     WAKEQKLANEKLGNKLREQVKYIAKLTGEKDHLHNVMVHLQQENKKLKNEIEEKKLKA
                     GNPRICAKVLGPCKLEPSQKGKLCGALGWRGVCQDPLPKMDLTKYTGVPHCSGSSYC"
     exon            182..430
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            431..652
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            653..823
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            824..934
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1061
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1219
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            1220..1460
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            1461..1650
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            1651..1804
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            1805..1972
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            1973..2110
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            2111..2275
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            2276..2443
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            2444..2611
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            2612..2715
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            2716..2790
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            2791..3029
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
     exon            3030..3282
                     /gene="Pmfbp1"
                     /gene_synonym="ODF3; Stap"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atccccacca tggcaagctc tgcttcaaaa acaagtccta tcactggaca tttcatagtc
       61 ctagtggtaa aatgagtggg caagcttcat ggagtagtaa gagagtcttt gtgaccttgg
      121 gtttacaaaa atgctaaagc ttaaaggaga atttcgaact gccaagggac tgaaagatga
      181 gaacaagaag caagctcaga cattagtatt cacagataac caggtggaat tcaagtccaa
      241 taagcagtat cacctcagac aacttcagca actgaagaag aagctgctga ccctgcagca
      301 ggagctggag atccgcaccc aggagctgca ggcttcctac cgctccctcc tgcagtacca
      361 gtccatcctg gagaagcaga cttctgacct tcttgttctt caccatcact gcaaactcaa
      421 ggaagatgag gtcattctct acgaggagga gatgggaagt cacagtaaga acaccgggga
      481 gaagctccat ctggcccaag agcagcttgc cttggcaggg gacaagatcg tctccctaga
      541 acggagccta aacctctaca gggacaagta ccagacttcc ctgagcaaca tcgagctgct
      601 ggagtgccaa gtgaagatgc tggaggagga acttagcgga ctcatttgtc aggaccctga
      661 gaacaaaggt gaccactcga aggttcgcat ctacacttct ccatgcatga ttcaagaaca
      721 tcaggagacc ctgaagcgac tgtctgaagt ttggcaaaag gtttctgaac aggacgacct
      781 aatccaggag cttcggaaca aactggcctg cagtaattct ttggttctgg aacgtgagga
      841 ggctttgata aaattacgag cagactttgc ttcctacacg gccacccaca ggcatccccc
      901 tacctcctca gaagactgtg aagacatcac aaagatccta aagtacctgc aagaacagaa
      961 agacagccag tgcctgcatg tggaggagta ccagaacctc gtgaaggacc tgcgcttgga
     1021 gctggaagcc gtgtcagagc agaagaaaaa gatcatgaag gacatgatga agctggagct
     1081 agacctccac gggctgcggg aagagacgtc atgtgtcatc gagaagaagg acaaggagac
     1141 tgtcttcctg cagtaccggc tgcaagatct gcagcaacag tacacagagt cacagaagct
     1201 gtccctaaag aaggacaagt tgctccaaga caaggacgag aggctgaatg agctggagaa
     1261 gaaactgaca caggtgcagt gtctcttttt ggagaaagaa acggagctgg agaagctgca
     1321 gtctacgaca aaagaactgg atgcaaacct ccaggaagtg aggcagagca catccaaaat
     1381 agacaacgag ggccttcggt ctgagatcca gaagctgaag gagagtcttg aggaggccag
     1441 ggagcagctg agagtgtcag atcagaatct aagccagtgt aaggatgagg cgcacctatc
     1501 tgcaaataac ctagaggacg ctcatcggaa actcgagaac tgccttcttc aggacaagcg
     1561 gaaggacgac gtcattaagg atctgcagag ccagctgcag aagctacaga aggagtcttc
     1621 ggaaactgaa gaggaacgaa aaaacaacag acaacagtta ctggagctga gctcagaact
     1681 caatgaaggc cagagacggc tctcgagcgc agagaaggaa aagtcgctgc ttcagaagac
     1741 actggatgaa gaggagaaga aaatcgacga gctgcttcat ggcgccaagg tttctgagca
     1801 aaagcaaagg gagctaacga actccctaag caagctacaa gacgaacttg cagaaacaaa
     1861 aaggctcttg gaggagaagc gagagcaact gaggaagagc aaagatcagg aaaaggcact
     1921 ggaggaagag attgaggcct tgcgacagga atcgaaaaag aaagagaaga tggcaaaaga
     1981 gcagttgagg aaactggaag aggagaagga gaacctccag gcggaattga gctcctgctc
     2041 ttcacaactg gactcctcta tcaacaaata caataactct cagaaagtca tccaagagct
     2101 caacacggag atagcccgcc agaaagactc catcatgatt ctgcagacac agctggattc
     2161 ggccatacag aaagagaaga actgcttcca gaacatggtc agtaaagaaa cttacgagga
     2221 acttctgcgg aagtcaggca cctgccaaga cgacctgaca caggccctgg agaagctcac
     2281 acaggcaacc tccgagacaa agagcctgca gcgcaacttg caacagaccc aggagaggaa
     2341 agctcagctg gaagatgaaa tcatggctta tgaggaaagg atgaaaaagc tcaatatgga
     2401 attaaaaaaa ctgcagggct tccaacagca gagtgagcta gaggtgcaca actttgacaa
     2461 gaaactggag gagatgggca accaggtgtt gcagtggcag aggcagcacc aaagtgacct
     2521 taagatgctg gcagctaaag agacacagct ccgggaattc caagaggaaa tgactgccct
     2581 gaaagagaac ctccttgcag atgagaagga gccgagcctt atgccttcaa agccagcacc
     2641 caaagagaac tataggcacc accgggagaa tgaccagatt atgtgcaatg tggaacagtg
     2701 ggcaaaggag cagaagcttg ccaatgagaa actgggaaac aagctgcgag aacaggttaa
     2761 atacattgcc aagctgactg gtgaaaagga ccacctccac aatgtgatgg tccatctgca
     2821 gcaggagaac aagaagctga agaacgagat tgaagagaag aagctaaagg ctgggaaccc
     2881 gaggatctgt gccaaggtcc taggcccgtg caaactggag ccgtcccaga agggaaagct
     2941 gtgcggtgca ctgggctgga gaggagtatg ccaggaccca ctgccgaaaa tggacctcac
     3001 caagtacacc ggggtgcctc actgctcagg atcctcctat tgctagactt ggctcttcac
     3061 cctaagcgtc tcttctacac gtatacagag gaccgtgagt tcccgcccct ctttcttgac
     3121 cggaatcagc tcctacagtc gtccgtcaag gcccctgcct cgtttgcacc atgctcatgc
     3181 attattgttt tgcctacttc ctgaagtgga gttgtggtac ctcactcccc ccagactctg
     3241 ggcccagact ctgaaataaa gatacaaaca acacagcctc ca
//
