LOCUS       NM_001191568            1137 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus polyamine-modulated factor 1 (Pmf1), mRNA.
ACCESSION   NM_001191568 XM_002729061
VERSION     NM_001191568.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Huang,W.Q., Ye,H.M., Cai,L.L., Ma,Q.L., Lu,C.X., Tong,S.J.,
            Tzeng,C.M. and Lin,Q.
  TITLE     The Associations of PMF1, ICAM1, AGT, TRIM65, FBF1, and ACOX1
            Variants With Leukoaraiosis in Chinese Population
  JOURNAL   Front Genet 10, 615 (2019)
   PUBMED   31396257
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1137)
  AUTHORS   Alvarez-Mugica,M., Fernandez-Gomez,J.M., Cebrian,V., Fresno,F.,
            Escaf,S. and Sanchez-Carbayo,M.
  TITLE     Polyamine-modulated factor-1 methylation predicts Bacillus
            Calmette-Guerin response in patients with high-grade
            non-muscle-invasive bladder carcinoma
  JOURNAL   Eur Urol 63 (2), 364-370 (2013)
   PUBMED   22682992
REFERENCE   3  (bases 1 to 1137)
  AUTHORS   Aleman,A., Cebrian,V., Alvarez,M., Lopez,V., Orenes,E.,
            Lopez-Serra,L., Algaba,F., Bellmunt,J., Lopez-Beltran,A.,
            Gonzalez-Peramato,P., Cordon-Cardo,C., Garcia,J., del Muro,J.G.,
            Esteller,M. and Sanchez-Carbayo,M.
  TITLE     Identification of PMF1 methylation in association with bladder
            cancer progression
  JOURNAL   Clin Cancer Res 14 (24), 8236-8243 (2008)
   PUBMED   19088041
REFERENCE   4  (bases 1 to 1137)
  AUTHORS   Kline,S.L., Cheeseman,I.M., Hori,T., Fukagawa,T. and Desai,A.
  TITLE     The human Mis12 complex is required for kinetochore assembly and
            proper chromosome segregation
  JOURNAL   J Cell Biol 173 (1), 9-17 (2006)
   PUBMED   16585270
REFERENCE   5  (bases 1 to 1137)
  AUTHORS   Obuse,C., Iwasaki,O., Kiyomitsu,T., Goshima,G., Toyoda,Y. and
            Yanagida,M.
  TITLE     A conserved Mis12 centromere complex is linked to heterochromatic
            HP1 and outer kinetochore protein Zwint-1
  JOURNAL   Nat Cell Biol 6 (11), 1135-1141 (2004)
   PUBMED   15502821
REFERENCE   6  (bases 1 to 1137)
  AUTHORS   Cheeseman,I.M., Niessen,S., Anderson,S., Hyndman,F., Yates,J.R.
            3rd, Oegema,K. and Desai,A.
  TITLE     A conserved protein network controls assembly of the outer
            kinetochore and its ability to sustain tension
  JOURNAL   Genes Dev 18 (18), 2255-2268 (2004)
   PUBMED   15371340
REFERENCE   7  (bases 1 to 1137)
  AUTHORS   Wang,Y., Devereux,W., Stewart,T.M. and Casero,R.A. Jr.
  TITLE     Characterization of the interaction between the transcription
            factors human polyamine modulated factor (PMF-1) and NF-E2-related
            factor 2 (Nrf-2) in the transcriptional regulation of the
            spermidine/spermine N1-acetyltransferase (SSAT) gene
  JOURNAL   Biochem J 355 (Pt 1), 45-49 (2001)
   PUBMED   11256947
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Oct 6, 2022 this sequence version replaced NM_001191568.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643294.9392.1, DV715168.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840105,
                                           SAMN12840108 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-168               JAXUCZ010000002.1  176165813-176165980 c
            169-274             JAXUCZ010000002.1  176151681-176151786 c
            275-375             JAXUCZ010000002.1  176150889-176150989 c
            376-571             JAXUCZ010000002.1  176147759-176147954 c
            572-1137            JAXUCZ010000002.1  176145896-176146461 c
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1137
                     /gene="Pmf1"
                     /note="polyamine-modulated factor 1"
                     /db_xref="GeneID:681050"
                     /db_xref="RGD:1584694"
     exon            1..168
                     /gene="Pmf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..625
                     /gene="Pmf1"
                     /codon_start=1
                     /product="polyamine-modulated factor 1"
                     /protein_id="NP_001178497.1"
                     /db_xref="GeneID:681050"
                     /db_xref="RGD:1584694"
                     /translation="MAGVSQDNEAAEKGPEGSSTEAVPGDTTISRVKLLDTIVDTFLQ
                     KLVAGKSYERFASCYKHLHQLNPEATRWIYDKFVAQLQTSIREEISEIKEEGNLEAVL
                     NSLDKIIEEGKDRGETAWRPSGIPEKDLCSVMAPYFLKQQDTLCRQVQKQEAKNQELA
                     EAVLAGRRQVEELQQQVQAVQQTWQALHREQRELLSVLRAPE"
     exon            169..274
                     /gene="Pmf1"
                     /inference="alignment:Splign:2.1.0"
     exon            275..375
                     /gene="Pmf1"
                     /inference="alignment:Splign:2.1.0"
     exon            376..571
                     /gene="Pmf1"
                     /inference="alignment:Splign:2.1.0"
     exon            572..1137
                     /gene="Pmf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggttcaat ttcaacatgg ctggagtgag ccaagataat gaggctgcgg aaaaggggcc
       61 cgagggttca tctacggaag ctgtgccagg cgacacgacc atctccaggg tgaaactcct
      121 cgataccata gtggacactt tcctccagaa actagtcgcg ggcaagagct atgagaggtt
      181 cgccagctgt tacaaacact tgcaccagtt gaaccctgag gcgacacggt ggatctatga
      241 caagtttgtg gctcagttgc agacgtctat ccgtgaggaa atctcagaaa tcaaagagga
      301 ggggaaccta gaagctgtcc tgaactccct ggataagata atagaagaag gcaaagatcg
      361 tggagagaca gcctggcgac ctagtggaat cccagagaaa gacctgtgca gtgtcatggc
      421 accctacttc ttgaagcagc aggataccct gtgccgtcaa gttcagaaac aggaagccaa
      481 gaaccaggaa ctggctgagg ctgtgctggc tggacgccgg caggtggagg agctacagca
      541 gcaggttcag gccgtccagc aaacatggca ggctctacac agagagcaga gggagctgtt
      601 gtcggtgcta agggcacccg agtgagaagc cccagagctg agagcagtcg cagccctgta
      661 gagcacttgt ggagccagtt tccaggcagt gatgaagctc cctccactgc tcaggttctg
      721 gtagggtcag actaccttca gcttcctgcc accatcttct gcctgcaaga atgggactcc
      781 caccctgggc atcagacacc aggctttgtc tcctggagtt gcagccagca ctgccccatg
      841 ccttcctgat tccccagccc tccctggact ggatttgggt agtgtttcag tctttactga
      901 ttgccgcctt gttgaccagc tcacggtccc ttgccatgtt ctccccgact gattgctgcc
      961 ttgctggcta gcccaagggc ccttgccatg ttctccccga ctgattgctg ccttgctggc
     1021 tagcccaagg gcccttgcca tgttctcccc gactgattgc tgccttgctg gctagcccaa
     1081 gggcccttgc catgttctcc ccacatccgt aaataaactt cctctaccac actgtaa
//
