LOCUS       XM_039080007            3128 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus premelanosome protein (Pmel),
            transcript variant X2, mRNA.
ACCESSION   XM_039080007
VERSION     XM_039080007.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080007.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3128
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3128
                     /gene="Pmel"
                     /note="premelanosome protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 11 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:362818"
                     /db_xref="RGD:1307513"
     CDS             1152..3014
                     /gene="Pmel"
                     /codon_start=1
                     /product="melanocyte protein PMEL isoform X2"
                     /protein_id="XP_038935935.1"
                     /db_xref="GeneID:362818"
                     /db_xref="RGD:1307513"
                     /translation="MYQTVGGIWDLDSGSRNQNWHGVSRQLVTKVWNKQLYPEWTEVQ
                     GSNCWRGGQVSLKVRNDGPTLVGANTSFSIALHFPGSQKVLPDGQVIWVNNTIINGSQ
                     VWGGQPVYPREPDDACIFPDGGPCPSGPKPPRRSFVYVWKTWGQYWQVLGGPESKLSI
                     PTGHARLGTHTMEVTVYHRRGSQSYVPLAHSSSTFTITDQVPFSVSVSQLQALDGENK
                     RFLRNHPLIFALQLHDPSGYLAEADLSYTWDFGDSTGTLISRAPDVTHTYLEPGSVTA
                     HVVLQAAIPLVSCGSSPVPGTTDGYVPTAEPPGTTPRQGATTKGQMPTTEPPGTTVVP
                     TTEVTATTSEQMLTSAVTDTTLAEMSTPESTTPARPSGTTVAQATITELVRTTAEELP
                     TPKPEGSDASPLLPTPSSTGSVSRLLDDTDTIMLVKRQVPLDCVLYRYGSFSLTLDIV
                     QGIESAEILQAVPSSEGDAFELTVSCRGGLPKEACMDISSPGCQPPAQRLCQPVPPSP
                     DCQLVLHQILKGGLGTYCLNVSLADANSLAVASTQLVVPGQEGSLGQAPLLVGVLLVL
                     VAVVLASLIYRHRLKKQDSVSQTPHGSTHWLRLPPVFCARRLGESSPLLSGQQV"
ORIGIN      
        1 ctattagctg ctctggattt ccaccttcta atcagacaag taaaaatatt tcaggctggc
       61 tctatttgat ttggtgagaa tatagttttg tttgtttttt atttgtttaa gacaggtcca
      121 gtgtagccca ggctagcctc agattcatta tatacccaag gatggactcg aactcctgat
      181 cctcttgttt ctacttccta agtactggga ttacagactt aaactattgt gcccagcttc
      241 agatgtgaag cataaaagta ttcctatttg atgcaagggg cagaaggcac agcactaatt
      301 ctgaggcttc ctaaagcaat cagctgaagc aggggctcca cggaggtgac atgagcaggg
      361 agatcctttg ggtaatatct taagtgctag tggtaggaga tgtagagtaa aaaagaatag
      421 ggtgttcaac aagaccaaac tgatacatac tgccttctgc acttgggctg gggcaggtga
      481 atacagccag gacttatgtg ccagggttgg gagaggtcta gaagggtctc agctgagcat
      541 cacatgaaag gactctgggg gattgaggcc tcgtgacagg ggcaagggga gggagtgaag
      601 ggtggtgaga gcgtctggaa tgtcctgctg ctgaggaggg agagcgggca gtcaaaaaga
      661 atagtgcatc ttatgactgc tcttcagtgg ctgagaggag catagaccaa acccccagca
      721 gaaccctggg cttccttcct gtggacatta gacttgggtt aaggacagtt ctctgtgctg
      781 atacgtgtgc ttgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
      841 gaaagttcct taatctggct tcttcatttg tactgcaatt tccaggcttt tttttctttt
      901 catttctttt ttgagatgga gttccttaat gtgcaaatgt tctgttgata cccacaggtc
      961 gaggttctta aggcactgtg cttacatttc aaaccctgac tttagttttt gtatttttcc
     1021 caccatgtga gtctggggaa cattaggcta ggcagcaagc atctttaccc cataagccac
     1081 ctcatttgcc caagattttt cttctgaata caaacttcag acaggaccag caagcagtaa
     1141 ggataaagca aatgtatcaa actgttggtg ggatctggga tctggattca ggatccagga
     1201 atcagaactg gcatggcgtc tcgaggcaac ttgtaactaa agtctggaat aagcagctgt
     1261 accctgagtg gacagaggtg caggggtcta actgctggag aggtggccag gtgtctctga
     1321 aggtcaggaa tgatggccct acactggttg gtgcaaatac ctccttttcc attgctctgc
     1381 acttccctgg aagtcaaaag gtactgccgg atggtcaggt tatctgggtc aacaacacca
     1441 tcatcaatgg gagccaggtg tggggaggac agccagtgta tccacgggaa cctgatgatg
     1501 cctgcatttt ccctgacggt ggaccctgcc catctggtcc caagcctccg aggagaagct
     1561 ttgtttatgt ttggaagacc tggggacaat actggcaagt tctggggggc ccggagtcca
     1621 agctgagcat tccaacgggt cacgcaaggc tgggcacaca caccatggaa gtgactgtct
     1681 accaccgacg ggggtcccag agctacgtgc ccctggctca ctccagttca accttcacca
     1741 tcactgacca ggtgcccttc tccgtgagtg tgtcccagct acaggccttg gatggagaga
     1801 acaagcgctt cctgagaaac catcctctca tctttgccct tcagctccac gaccccagtg
     1861 gctatttggc tgaggctgac ctctcctaca cctgggactt tggagacagt actggaaccc
     1921 tgatctctcg ggcacctgac gtcactcaca cttatctgga gccaggctca gtcactgccc
     1981 atgtggtgct gcaagctgcc attcctcttg tttcctgtgg ttcctcccca gtgccaggta
     2041 ccacagatgg ctatgtgcca actgcagagc cccctggaac cacgcccagg caaggagcca
     2101 ctacaaaggg gcagatgccg accacagagc cccctggaac cacggttgtg ccaaccacag
     2161 aggtcacagc tacgacctct gaacagatgc tgacctcagc ggtcacagat acgacgctgg
     2221 cagagatgtc aactccagag agtaccacac ccgcaaggcc ctctggaacc acagttgcac
     2281 aggcaacaat cacagagttg gtgagaacta ctgctgaaga attacccacc cctaaacccg
     2341 agggttcaga tgccagccca ctgctgccca caccaagttc tacagggtcc gttagccgtc
     2401 tactggatga cacagacacc ataatgcttg tgaagagaca agtccccctg gattgtgttc
     2461 tatatcgata tggttctttt tccctcaccc tggatatcgt ccagggtatt gaaagtgctg
     2521 agatcctgca ggctgtgcca tccagtgagg gggacgcctt tgagctgact gtgtcctgcc
     2581 gaggcgggct acccaaggaa gcctgcatgg atatttcatc accagggtgc cagccccctg
     2641 cccagaggct gtgccagcct gtgccaccaa gcccagactg ccagctggtt ctacaccaaa
     2701 tactgaaagg cggcttgggg acttattgcc tcaatgtgtc tttggctgat gccaacagcc
     2761 tggcagtggc cagcacccaa cttgttgttc ctggtcaaga aggcagcctt gggcaggctc
     2821 ccttgcttgt aggtgtctta ctggtgttgg tggctgtggt ccttgcatct ctgatatata
     2881 ggcacagact taagaagcag gactcagttt cccaaacgcc acatggcagc actcactggc
     2941 tgcgcctgcc tccagtcttc tgcgctcgcc gcctcggtga aagcagtccg ctcctcagcg
     3001 ggcagcaggt ttaagcattc tccatgctgt ggatttcctg gggctgacag cagtgcctgt
     3061 attttctgca gtcttccctc caagattacc aaccaatatc tgaaataaat tctcagaacc
     3121 ttgcggta
//
