LOCUS       XM_039080099            7621 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus plexin C1 (Plxnc1), transcript variant
            X1, mRNA.
ACCESSION   XM_039080099
VERSION     XM_039080099.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001426988.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7621
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7621
                     /gene="Plxnc1"
                     /note="plexin C1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 24 ESTs, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 84 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362873"
                     /db_xref="RGD:1307420"
     CDS             27..5306
                     /gene="Plxnc1"
                     /codon_start=1
                     /product="plexin-C1 isoform X1"
                     /protein_id="XP_038936027.1"
                     /db_xref="GeneID:362873"
                     /db_xref="RGD:1307420"
                     /translation="MKEATYTVTQITRPPSSRSHRIKKGGEMGVEGGRARGGGRRRKR
                     MRKGPVASHFHNGKVKRTSAPNLSSPPRPPRSPPPVPSLPLRASPRAPAPHRGTLRRR
                     RTRRKRLRSAQGLPPRHRLPERARRASSSLHSFPAEPRGWGGRGSPSARRSRHRRRRR
                     PRLRRRAPEPPEPPRALPGGGPPSPMEVSRRKAPPRPPYPAAPLPLIAYLLALAVPAR
                     GADEPVWRSEQAIGAIAASRADGVFVASGSCLDQLDYSLKNRLSRLYRDQAGNCTEPV
                     SLAPPARPRPGSSFSKLLLPYREGATGLEGLLLTGWTFDRGACEVRPLGNLNRSSLRN
                     GTEVVSCHPQGSTAGVVYRASGTDLWYLAVAATYVLPEPETANRCNPAASDRDTAIAL
                     KNTEGRSLATQELGRLKLRGSAGSLHFVDAFLWNGSVYFPYYPYNYTSGAATGWPSMA
                     RIAQSTEVLFQGQAALDCGHGHPEGRRLLLSSSLVEAVDIWAGVFSAATGEGQEKRSP
                     ATTALCLFRMSEIQARARSCSWDFQATEHNCKEGDQPEQVQPIASSTLIHSDLTSVYG
                     TVVMNRIVLFLGTGDGQLLKVVLGENLTSNCPEVIYEIKEETPVFYKLVPHPVKDTYI
                     YLTAGKEVRRIQVANCSKRKSCFQCLAAADPHCGWCLPLQRCTFQGDCTHAGSFENWL
                     DISSGPKKCPKIQIIRSLRERTTVTIVGSVSARHSECVVKNADTGKLLCQGRSQMNRT
                     CACNIPSRPSNNVFVVNATFTFPSWSVSERFNFTNCASVRECPACIETGCAWCKRDKR
                     CIHPFTPCEPSDYERNQELCHVAVEKPPKDSGGGRVKESKRNRTDPALQVFYIKAIEP
                     QKISTLGKSNVIVTGANFTQASNITMILRGTSTCEKDVIRVSHVLNDTHMKFSLPSSR
                     KEMKDVCIQFDGGNCSSAGALSYIALPHCSLIVPATTWISGGQNITIMGRNFDVIDNL
                     IISHELKGNINVSINVSEYCMATSCRFLAPNLKSSKGRTNVVVKLRVQDTYLDCGTLQ
                     YLEDPRFTGYRVESEIDTELEVKIQKENDNFNISRDDIDITLFHGENKQFNCSFENIT
                     RNQDLTTILCKIKSIKNANTIATSSKKVRVKLGNLELYVEQESVPSTWYFLIALPILL
                     AIVIVVAVVVTRHKSKELSRKQSQQLELLESELRKEIRDGFAELQMDKLDVVDSFGTV
                     PFLDYKHFALRTFFPESGGFTHIFTEDMHNRDANDKNESLTALDALICNKSFLVTVIH
                     TLEKQKNFSVKDRCLFASFLTIALQTKLVYLTSILEVLTRDLMEQCSNMQPKLMLRRT
                     ESVVEKLLTNWMSVCLSGFLRETVGEPFYLLVTTLNQKINKGPVDVITCKALYTLNED
                     WLLWQVPEFNTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKN
                     GSPYGLQLNEIGLELQVGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKVF
                     KKIANFTSDVEYSDDHCHLILPDSEAFQVVQGKRHRGKHKFKVKEMYLTKLLSTKVAI
                     HSVLEKLFRSIWSLPNSRAPFAIKYFFDFLDAQAENKKITDPDVVHIWKTNSLPLRFW
                     VNILKNPQFVFDIKKTPHIDSCLSVIAQAFMDAFSLTEQQLGKEAPTNKLLYAKDIPT
                     YKEEVKSYYKAIRDLPPLSSLEMEEFLTQESKKHENEFNEEVALTEIYKYIVKYFDEI
                     LNKLERERGLEEAQKQLLHVKVLFDEKKKCKWM"
ORIGIN      
        1 aggcggctca gctttgttat gaatagatga aagaggccac ctacacagta acccaaatta
       61 cgagacctcc ctcctcccga tctcaccgaa tcaagaaggg aggggagatg ggcgtggagg
      121 gagggcgggc gagaggcgga gggcggagga ggaagaggat gaggaagggg ccagttgcat
      181 cccactttca caatgggaaa gtgaaacgca caagcgcacc caacctctcc agccctcccc
      241 gcccgcctcg ctcccctccg cccgtcccct cccttcccct ccgcgcctcc ccgcgagcgc
      301 ccgcgccgca cagaggaact ctccggcgaa ggcggacgag gaggaagcgt ctccggagcg
      361 cgcaaggctt gccgccgcgg cacaggctgc cggagcgagc ccgccgcgcg tcgtcctccc
      421 tgcactcctt cccggccgag ccgcggggat ggggcggccg cgggagcccg agcgcgcgca
      481 ggagccgcca ccgccgccgc cgccgcccgc gtctccgtcg ccgcgcgcct gagccgcccg
      541 agccgccgcg cgccctgccc gggggcggcc cccctagccc catggaggtc tcccggagga
      601 aggcgccgcc gcgccccccg taccctgccg caccgctgcc cctgatcgcc tatctgctgg
      661 cactggcggt tcccgcccgg ggcgcggacg agccggtgtg gcgatctgag caagccatcg
      721 gagccatagc ggcgagccga gcggacggcg tgttcgtggc gagcggcagc tgcctggacc
      781 agctggacta cagcctgaag aacaggctct cccgcctata ccgggaccaa gcgggcaact
      841 gcaccgagcc tgtctcgttg gcgccccccg cgcggccccg gcccgggagc agcttcagca
      901 agctgctatt accctaccgc gagggggcga ccggtctcga ggggctgctg ctcaccggct
      961 ggaccttcga ccggggcgcc tgcgaggtgc ggcccttggg caaccttaac cgcagctccc
     1021 tgcgcaacgg caccgaggtg gtgtcgtgtc acccgcaggg ctcgacggcc ggtgtggtgt
     1081 accgcgcgag tggcaccgat ctctggtacc tggcggtagc cgccacctat gtgctgccgg
     1141 agccggagac cgcgaatcgc tgcaaccccg cggcatctga tcgcgacacg gccatcgcgc
     1201 tcaagaacac ggaggggcgc agtctggcca cgcaggagct gggccgcctg aaactgcgcg
     1261 gtagtgcggg cagcctgcac ttcgtggacg cctttctctg gaacggcagt gtctacttcc
     1321 cctactatcc ctacaactac acaagtggcg ctgccaccgg ctggcccagc atggcgcgca
     1381 tcgcgcagag cacagaggtg ctattccagg gccaggcggc cctcgattgc ggccacggcc
     1441 accccgaggg ccgccgcctg ctgctttcct ccagtctggt ggaggctgtg gacatctggg
     1501 ccggcgtgtt cagcgcggcc actggagagg gccaggagaa gcgctccccc gccaccacgg
     1561 ctctctgcct cttcaggatg agtgagatcc aggcgcgcgc caggagctgc agctgggact
     1621 ttcaggcgac tgagcacaac tgcaaagaag gggatcagcc tgaacaggtc cagccaatcg
     1681 catcgtcaac actgatccac tctgacctga cgtctgtgta tggcacggtg gtgatgaaca
     1741 ggattgttct gttcttgggg actggagacg gccagttact taaggttgtt cttggagaga
     1801 atttgacttc aaattgccca gaggttatct atgaaattaa agaagaaacg cccgtgttct
     1861 acaagctcgt tcctcacccc gtgaaggaca cctacatcta cctaacggct gggaaggagg
     1921 tgagaagaat tcaagttgca aactgcagta aacgtaaatc ctgtttccag tgcttagcag
     1981 cggcagaccc ccactgtggc tggtgcctcc cgctacaaag gtgcactttt caaggggatt
     2041 gcacacatgc tgggagcttt gaaaactggc tggatatttc atcaggacct aagaaatgcc
     2101 cgaaaattca gataattcga agcctccgag agaggaccac agtgaccatt gtgggaagcg
     2161 tctctgcgag acactcggag tgcgtggtga agaacgcaga cacgggcaag ctgctttgcc
     2221 aggggagaag ccagatgaac cggacctgtg cctgcaacat ccctagcaga cccagcaaca
     2281 atgtctttgt cgtcaacgcc accttcacct ttccatcttg gagcgtatcg gaaagattca
     2341 acttcaccaa ctgcgcgtca gtgagagaat gcccagcatg tattgaaact ggctgtgctt
     2401 ggtgtaaacg ggacaaaaga tgcatccatc ccttcacccc ctgcgaaccg tcggattatg
     2461 agaggaatca ggagctctgt cacgttgctg tggagaaacc acccaaggac tcaggaggag
     2521 gaagagtcaa ggagagcaag agaaacagaa ccgacccggc tttgcaggtc ttctacatta
     2581 aggccattga gccacaaaaa atatcgacct tagggaaaag taatgtgatt gttactggag
     2641 caaacttcac ccaagcgtca aatatcacca tgatcctgag aggaaccagt acatgtgaga
     2701 aggatgtgat ccgggttagc catgtgctaa atgacacaca catgaaattc tcgcttccat
     2761 cgagccgcaa ggaaatgaaa gacgtttgca tccagttcga cggtgggaac tgctcgtccg
     2821 ctggggcgct ctcatacatt gccctgccgc actgttccct gatagtgcct gccaccacct
     2881 ggatcagtgg tggacaaaat ataaccatca tgggcaggaa ttttgacgtc attgacaacc
     2941 taatcatttc acatgagctg aagggaaaca taaatgtaag cataaacgtc tctgaatact
     3001 gcatggcaac ttcctgcagg tttttagctc ctaatttaaa gagctccaaa gggcgtacaa
     3061 atgtggttgt gaagctaagg gtacaagaca cctacttgga ctgtggaacc ctgcagtacc
     3121 tcgaggaccc cagatttaca gggtaccgag tggagtcaga gatcgataca gagttggaag
     3181 taaaaattca aaaagaaaac gacaatttca acatttccag ggatgacatc gatattactc
     3241 tcttccatgg ggaaaacaaa caatttaatt gcagtttcga aaatatcacc agaaaccaag
     3301 atctcacaac catcctttgc aagatcaaga gcatcaagaa tgcaaacacc atcgccacct
     3361 cctctaagaa agtccgagtc aaactgggaa atctggagct ctatgtggaa caggaatccg
     3421 ttccttccac gtggtatttt ctgatcgcgc ttccaatctt gctggccatt gtcattgttg
     3481 tggctgtggt ggtgaccagg cacaaatcca aggagctgag tcggaagcag agccaacagc
     3541 tggaactgct ggagagtgaa ctccggaaag agatccgcga tggctttgcc gagctccaga
     3601 tggataaatt ggatgtggtt gatagttttg gaacggtacc cttccttgac tacaaacatt
     3661 tcgctctgag aactttcttc cctgagtcag gtggcttcac gcacatcttc actgaggaca
     3721 tgcacaacag agacgccaat gacaagaacg agagcctcac agccttggat gccctaatat
     3781 gtaataaaag cttcctagtt actgtcatcc acacccttga gaagcagaag aacttctcag
     3841 taaaggacag gtgtctcttt gcgtccttcc taaccatcgc tctgcaaacc aagctggtct
     3901 acttgaccag catcctggag gtgctgacca gagacctgat ggagcagtgc agtaatatgc
     3961 agcccaagct catgctgagg cgcacggagt ctgtggtgga gaaactcctt acaaactgga
     4021 tgtccgtctg tctctctggt ttccttcggg agactgttgg ggaaccattc tatttgctgg
     4081 tgacgactct gaaccagaag ataaacaagg gtcctgtgga tgtgatcacc tgcaaagcgc
     4141 tgtacaccct taacgaagac tggctgctgt ggcaggttcc tgaattcaac actgtggcat
     4201 taaatgtcgt ctttgaaaaa atcccagaaa atgagagtgc agatgtctgc cggaatattt
     4261 cagtcaatgt tcttgactgt gacaccatag gccaagccaa agaaaagatt ttccaagcct
     4321 tcctaagcaa aaacggttct ccatacggac tccagctcaa tgagattggc cttgaacttc
     4381 aggtgggaac acgacagaaa gaactcctgg acattgacag ctcctctgtg attcttgaag
     4441 atgggataac caagctgaac accattggcc actatgagat atcaaatgga tccactataa
     4501 aagtctttaa gaagatagca aattttactt cagatgtgga atactcagat gaccactgcc
     4561 acttgatttt gccagattca gaggcattcc aagtagttca aggaaaaaga catcgaggga
     4621 aacacaagtt caaagtaaaa gaaatgtatc tgacaaagct gctgtcgacc aaggtggcaa
     4681 ttcactctgt gcttgagaaa ctcttcagaa gcatttggag tttgcctaat agcagggccc
     4741 catttgctat aaaatacttc tttgactttc tggatgccca agctgaaaac aaaaaaatca
     4801 cagaccctga tgtcgtacat atctggaaaa caaacagcct ccctcttcga ttctgggtaa
     4861 acatcctgaa gaaccctcag tttgtctttg acattaagaa gactccacac atagacagct
     4921 gtttgtcagt gattgcccaa gcattcatgg atgccttttc tctcacagaa cagcaactgg
     4981 ggaaggaagc accaaccaat aaacttctct atgccaagga tataccaacc tacaaggagg
     5041 aagtgaagtc ttactacaaa gcaatcaggg atttgcctcc attgtcatct ttagaaatgg
     5101 aagaattctt aactcaggaa tctaagaaac atgaaaatga atttaatgaa gaagtggcct
     5161 tgacagaaat ctacaaatac atcgtaaagt attttgatga gattctaaat aaactagaaa
     5221 gagaacgagg gctggaagaa gctcagaaac aactcttgca tgtaaaagtc ttatttgatg
     5281 aaaagaagaa atgcaagtgg atgtaagcac cctggggcct ggctttattt gacaaagttc
     5341 ttcagacagc ttgggagcaa aatggctgct tgagctactc tttgtcgtta atgtcttaag
     5401 tttgcacatg ggttccactt ccagcactgt cttttaagag accaaggcac acgcacagct
     5461 tttagaaagc gttatcaact actgtgcctg ttggtatgtc gtgggaacct tctgtaaata
     5521 gagctgaagt ggttgttgca aacagcctcc ttgtttacag agaatacagg gccagtaagc
     5581 aagtgtcagt attgtaacta gtctccactt aagcacaatg gtatctaagt ggctttgttg
     5641 gaaaactaca gctatgtagc acttgtgact acactgtact cctgcggagg gaaggggata
     5701 ccaacaatgc tcacactgtg aaaggagtca tgtggaaata aggtgggggt gttagggcag
     5761 ccctgaggat ctgcagcatt aggtcacttt ccctaggagt tcttggaaag gctgaaggca
     5821 gaatttggta gtgtgtacac ttagcattcg tgagtgtgtg tgtttaaacc aaaaactaac
     5881 agtgttgcaa cattgttgaa agggctcgtg tttttcagtg gttgccagcc gggctcatca
     5941 gctcacctcc atctcatcaa agcagctcta aagcaaggag agtgggtggg tttcactgaa
     6001 atgcaacagc agttttccta gactctgtcc tacagtgtct cctttttatc tttttcatgt
     6061 atctggtagt ggacatgttg ggtattgtaa gaaaagagtt catgacttta cttctgtttg
     6121 atcagaactg tctgtggatg tgtaagtcac tcctgtaacc ttacatttct gtgctagtgt
     6181 ctccttgctt tagatttctg gtgaaccctg tggttataaa tacttgtgtg tgattaaaat
     6241 aaaagataca ttttacattt catcaaattg ttgttcacat tggagtatta tatataaata
     6301 tatatttgag gcccaaggcc tggaaaatat tagtacaact tggtatctta gtcttactat
     6361 gtactttttg aaagtattcc ttacaggaga aagatttaaa atactcattt tattcgtgcc
     6421 tctttttttt tttttcaaag aatttcctat cgagttataa tgtagtcttt tttattgctg
     6481 attttttatt cccaaatttt tgctgctcat gaccaatttt aataccactg tgttttcctt
     6541 ctattaaaca gaagtaaaaa gtgtaatctg acagctctct cacttacctt gtagcgggca
     6601 ccttttaccc ttggtgttcc aaacccccca gtttaggaag gaattttctt tcaatcagca
     6661 aataaaccat cgagcacaca ttcctttaaa accatttacc agcactgtct ggaccgtcta
     6721 gaatgcaatg tgaattgtct cggtaaacgc aatccttttg ctccttactg tcccataaag
     6781 tagaagagag gggacacctc aacagtgcag ttgctgcccc gacaggcacc ttcccgatcc
     6841 tatttcttgt gacttgtctg tccaatggac acatctcaaa actactacca aatagtttat
     6901 ttctaagtag aaaggtgaga ggtctggtcc ccatttaaag ctgctactgt cttcaaagag
     6961 gtgaaggcat tcataagaga aaagctggag gagactcgag agccaagggt aggagaattg
     7021 cccaacaaac ccccttctct ggggaacagg gaactcgaag gcggagcctc agctttagct
     7081 atcacggaat gccacatatg gtgagggtgt ccctgtccag ctctctgacc gcctcttcca
     7141 ggagttagga actttgggca agtcacttac ctctttgtgc ctcaatttct gtattctctt
     7201 tctaacctac ctcaccgagg tggtgtgaag actcactaat gtatgtagtg tttgtcagtc
     7261 ctccagtgga aagcactatc tacatcacac tttggatcgc attaggcaaa cgcacagaat
     7321 gtccaaatta gatgtgtgct gaagacaatc agtcactggg cctctcctca acaactaaag
     7381 aaacagatga caaacgctct ctattttcaa gtttctttgc atatttttgg tgcaaaacaa
     7441 ttactttata aacttttttt ttctaacact agtgtctaaa gcagcattta aaagttactt
     7501 ctgttacttt ttctgtatta ggatttaaag tctatttctt actgtatagc tgactgaagc
     7561 tgttcttgga gatgaatgtt ttaaatgtct atatccagaa ataaacattt tgctgtaaca
     7621 a
//
