LOCUS       XM_006229577            7056 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus plexin A3 (Plxna3), transcript variant
            X1, mRNA.
ACCESSION   XM_006229577
VERSION     XM_006229577.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006229577.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006229577.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7056
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7056
                     /gene="Plxna3"
                     /gene_synonym="Plxn4; SEX"
                     /note="plexin A3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 27 ESTs, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 71 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:309280"
                     /db_xref="RGD:1584973"
     CDS             298..5916
                     /gene="Plxna3"
                     /gene_synonym="Plxn4; SEX"
                     /codon_start=1
                     /product="plexin-A3 isoform X1"
                     /protein_id="XP_006229639.1"
                     /db_xref="GeneID:309280"
                     /db_xref="RGD:1584973"
                     /translation="MHTVCLLPLLFFTIGGCLGSSRPFRTFVVTDTTLTHLAVHRVTG
                     EVFVGAVNRVFKLASNLTELRAHVTGPIEDNARCYPPPSMRVCSHRLVPVDNVNKLLL
                     IDYAARRLVACGSIWQGICQFLRLDDLFKLGEPHHRKEHYLSGAQEPDSMAGVIVEQG
                     QGPSKLFVGTAVDGKSEYFPTLSSRKLIDDEDSGDMFSLVYQDEFVSSQIKIPSDTLS
                     LYPAFDIYYIYGFVSASFVYFLTLQLDTQQTLLDTAGEKFFTSKIVRMCAGDSEFYSY
                     VEFPIGCSWRGVEYRLVQSAHLAKPGLLLAQALGVPADEDVLFTIFSQGQKNRANPPR
                     QTILCLFTLSSINAHIRRRIQSCYRGEGTLALPWLLNKELPCINTPMQINGNFCGLVL
                     NQPLGGLHVIEGLPLLADSTDGMASVAAYTYHQHSVVFIGTRSGNLKKVRVDGSQDAQ
                     LYETVSVVQGTPILRDLLFSPDHRHIYLLSEKQVSQLPVETCEQYLSCAACLGSGDPH
                     CGWCVLQHRCCREGACPGASAPHGFAEELNKCIQVRVRPNNVSVTSSGVQLTVAMRNV
                     PDLSLGVSCSFEEVTESEAILLPSGELRCPSPSLQELQTLTRGHGATHTVRLQLLSME
                     TGVRFAGVDFVFYNCSALQSCMSCVGSPYPCHWCKYRHVCTSHPHECSFQEGRVHSPE
                     GCPEILPRGDLLIPVGVMQPLTLRAKNLPQPQSGQKNYECVVRVQGRQHRVPAVRFNS
                     SSVQCQNASYFYEGDEFGDTELDFSVVWDGDFPIDKPPSFRALLYKCWAQRPSCGLCL
                     KADPRFNCGWCISEHRCQLRVHCPAPKSNWMHPSQKGARCSHPRITQIHPLTGPKEGG
                     TRVTIVGENLGLTSREVGLRVAGVRCNSIPTEYVSAERIVCEMEESLVPSPPPGPAEL
                     CVGDCSADFRTQSQQLYSFVTPTLDRVSPTRGPASGGTRLTISGTSLDAGSRVTVIIR
                     DGECQFVRRDAEAIVCISPISTLGPSQAPIILAIDHANISSTGVIYTYTQDPTVTHLE
                     PTWSIINGSTSITVSGTHLLTVQEPRVRAKYRGIETTNTCQVINDTAMLCKAPGIFLG
                     HPQPRAQGEHPDEFGFLLDHVQAARSLNRSSFTYYPDPSFEPLGPSGVLDVKPGSHVV
                     LKGKNLIPAAAGSSRLNYTVLIGGQPCALTVSDTQLLCDSPSQTGRQPVMVLVGGLEF
                     WLGTLHITADRALTLPAMVGLAAGGGLLLLAITVVLVAYKRKTQDADRTLKRLQLQMD
                     NLESRVALECKEAFAELQTDINELTNHMDGVQIPFLDYRTYAVRVLFPGIEAHPVLKE
                     LDTPPNVEKALRLFGQLLHSRAFLLTFIHTLEAQSSFSMRDRGTVASLTMVALQSRLD
                     YATGLLKQLLADLIEKNLESKNHPKLLLRRTESVAEKMLTNWFTFLLHKFLKECAGEP
                     LFLLYCAIKQQMEKGPIDAITGEARYSLSEDKLIRQQIDYKTLTLHCVCPESEGSAQV
                     PVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTK
                     IECDWKRINSLAHYQVTDGSLVALVPKQVSAYNMANSFTFTRSLSRYESLLRAASSPD
                     SLRSRAPMLTPDQEAGTKLWHLVKNHDHADHREGDRGSKMVSEIYLTRLLATKGTLQK
                     FVDDLFETVFSTAHRGSALPLAIKYMFDFLDEQADQRQISDPDVRHTWKSNCLPLRFW
                     VNVIKNPQFVFDIHKNSITDACLSVVAQTFMDSCSTSEHRLGKDSPSNKLLYAKDIPN
                     YKSWVERYYRDIAKMASISDQDMDAYLVEQSRLHANDFNVLSALSELYFYVTKYRQEI
                     LTSLDRDASCRKHKLRQKLEQIITLVSSSS"
ORIGIN      
        1 gcctcccacc ccaccacgag ctctgccttt taggtctccg gtccgccctc tctgagagcc
       61 ccctcccggt gtggtggtac ggtccgggtt taaaaggccc aggcggccgc gggccagccc
      121 agtgtgtggg cggcggcggt tgcagatttt gcaacgtgcg gggcgagttt gcggggccac
      181 gcgagggggg gcggctgtag ggcacggggg cacgtccacg tggctacggg tggacaccct
      241 gagtcagccg cggtggaggg acaggtaggc ctgtccctcg cgttacagct gctggtcatg
      301 cacactgtct gccttctccc attgctattc ttcaccatag gagggtgcct gggtagcagc
      361 aggccgtttc gtacctttgt ggtgacagat accacactga ctcacctggc tgtgcaccga
      421 gtgactgggg aggtgtttgt aggtgccgtg aaccgagttt tcaagctggc ttcaaatcta
      481 actgagctac gggcccatgt cacagggccc attgaggaca atgctcgctg ctacccaccc
      541 cctagcatgc gtgtgtgctc ccaccgcctg gtgcctgtgg acaatgtgaa caagctgctc
      601 ctcatagact atgcagcccg tcgcttggta gcttgtggca gcatctggca gggcatttgc
      661 cagttcctgc gtctggatga cctcttcaag ttgggtgagc cccaccatcg caaggaacac
      721 tatctgtcag gggcccagga gcctgattcc atggctggcg tcattgttga acagggccag
      781 gggcctagca agctgtttgt gggcaccgct gttgatggca agtctgagta ctttcccacc
      841 ttgagttccc gtaagctcat cgacgatgag gacagtggag atatgttcag tctggtgtac
      901 caggatgagt ttgtctcttc tcagatcaag atcccttcag acacactgtc cttgtaccct
      961 gcctttgaca tctactacat atatggcttt gtcagtgcct ccttcgtgta cttcttaaca
     1021 ttgcagctgg atacccagca gacactgctg gatacagcag gcgagaaatt cttcacatct
     1081 aagattgtgc gcatgtgtgc cggggactca gagttctact cttacgtaga gttccctatt
     1141 ggctgctcct ggcgtggtgt ggagtaccgc ttggtgcaga gtgcccatct ggccaagcca
     1201 ggcctgctac tggcccaggc tctgggtgtg ccagccgacg aggatgtgct cttcaccatc
     1261 ttctctcaag gccagaagaa tcgagccaac ccacctcggc agaccatcct ttgcctcttc
     1321 accctcagca gcattaatgc ccacattcgg cgccgaatcc aatcgtgcta ccgtggggag
     1381 ggcacgctgg ccttgccctg gctgctgaat aaggagctgc cctgcatcaa cacccccatg
     1441 cagatcaatg gaaacttctg tgggttagtg ttgaatcaac cattgggtgg cctacacgtg
     1501 attgaggggc tacccttgct ggctgacagc actgatggca tggccagtgt ggctgcctac
     1561 acctaccacc agcactctgt ggttttcatc ggtacacgca gcggtaattt gaagaaggtg
     1621 cgagttgatg gctctcagga tgcccaacta tatgaaacgg tctctgtggt gcagggcacc
     1681 cccatacttc gagacctgct cttcagccct gaccaccgac acatctacct cctgagtgag
     1741 aagcaggtga gccaactccc ggtggagacc tgtgagcagt atctgagctg tgctgcatgc
     1801 ctgggctcag gggacccaca ctgtggttgg tgtgtgctac agcacaggtg ctgccgtgaa
     1861 ggggcctgtc caggtgcctc tgccccacac ggctttgcag aagagctgaa caaatgtata
     1921 caagtgcggg ttcggcctaa taatgtatca gtgacatcct ctggggtgca gctgacagta
     1981 gccatgcgca atgtgccaga cctcagtttg ggtgtgagct gttcctttga ggaagtgact
     2041 gaaagtgagg ctattctgct gccctctgga gagctacgat gcccttcacc atctcttcag
     2101 gagctccaga cacttaccag agggcatggg gcaactcata ctgtgcggct tcagctgctc
     2161 tccatggaga ctggtgtgag gtttgctggg gttgactttg tcttctacaa ctgcagtgcc
     2221 ctccagtcgt gtatgtcctg tgttggcagc ccttacccct gccactggtg taagtaccgt
     2281 catgtgtgca ccagccaccc acacgagtgt tccttccagg agggcagggt ccacagccct
     2341 gagggctgcc cagagatcct gcctcgaggg gacctcttga ttcctgtggg tgtcatgcag
     2401 cctctaactc tgcgggctaa gaacctgcca cagcctcagt cagggcagaa gaattatgaa
     2461 tgtgtggtcc gtgtacaggg gcggcaacat cgggtacctg cagtgcgctt taatagcagc
     2521 agcgtgcagt gccagaatgc ctcgtacttc tatgaaggtg atgagtttgg tgacactgaa
     2581 ctggacttct ctgtggtctg ggatggagat ttccccattg ataagcctcc tagcttccga
     2641 gcccttcttt acaagtgctg ggctcagcgg cctagctgtg gcctctgcct caaggctgat
     2701 ccccgattca actgtggctg gtgcatctcg gagcacaggt gccagcttcg ggttcactgc
     2761 ccagctccca aaagtaactg gatgcaccca agccagaagg gggcccgatg cagccatccc
     2821 cgaatcaccc agattcaccc actaacagga cccaaggagg ggggcacccg ggtcaccatt
     2881 gtgggtgaga acctgggcct cacttcccgt gaggttggcc ttcgagtagc tggtgtacgt
     2941 tgtaactcca ttcccaccga atatgtcagt gctgaaagga tcgtatgtga gatggaggaa
     3001 tcgttggtgc ccagcccacc acctgggcct gctgagctct gtgtaggtga ttgttctgct
     3061 gacttccgca cacagtccca gcaactctac agctttgtga ccccaacact tgaccgtgta
     3121 agtcctactc ggggcccagc ttctggggga actcggctca ccatctctgg aacttctctg
     3181 gatgctggta gcagggtcac agttattata agagatggag agtgccagtt tgtgaggaga
     3241 gatgctgagg caatcgtgtg tatctcacct atctccactc tgggccccag tcaggcccct
     3301 atcatccttg ccatcgacca tgccaacatc tccagcactg gagtcatcta tacctacact
     3361 caggacccta ctgtcacaca ccttgagccc acctggagca tcatcaatgg aagcacctcc
     3421 atcactgtga gtggaaccca tctgctgaca gtgcaagaac cccgtgtacg agccaagtac
     3481 cgtggtattg agaccactaa tacatgccag gtgatcaacg acactgcaat gctatgtaag
     3541 gcccctggca tcttccttgg gcatcctcag cctcgggccc aaggcgagca ccctgatgag
     3601 tttggcttct tgctggacca cgtgcaggca gcccgctccc tcaaccgttc ttccttcacc
     3661 tactaccctg atcccagctt tgaaccactt gggccctctg gtgtgctaga tgtcaaacct
     3721 ggttcgcatg ttgtattgaa gggcaagaac ctgatccctg ctgcagctgg cagctcccgc
     3781 ctcaactaca cagtgttgat tggaggacaa ccatgtgcac taactgtctc agatactcaa
     3841 cttctgtgtg attcccctag ccagacaggc cggcaacctg ttatggtgct ggtgggtggc
     3901 ctggagttct ggttgggcac cctgcacatc actgctgatc gggcactgac cttaccggct
     3961 atggtggggc tggcagcagg aggagggctc ttgctgctgg ccatcactgt tgtactggtt
     4021 gcctacaagc gaaagactca ggatgcagac cgcacactta agcgacttca gctacagatg
     4081 gacaacctgg agtctcgtgt ggccttggag tgcaaggaag cttttgctga gttacagaca
     4141 gatatcaacg aactgacaaa ccacatggat ggtgtgcaga tccccttctt ggactaccgg
     4201 acctatgctg tgcgcgtact tttccctggc attgaggctc acccagtgct caaggagctg
     4261 gatactcccc ccaatgtgga gaaagccctg cgcctatttg gacagttgct gcacagccgt
     4321 gccttcctgc tcaccttcat ccacactttg gaggcccaga gcagtttctc catgcgtgac
     4381 cgtggtactg tggcctcact caccatggtg gccctgcaga gtcggcttga ctatgccact
     4441 gggctgctca agcaactgct ggctgacctc atagagaaaa accttgagag caagaaccac
     4501 ccaaagctgc tattgcgcag gacagagtca gtggctgaga agatgctcac caactggttc
     4561 acattcctgc tgcataagtt cctgaaggag tgcgccgggg agccactctt cctgctgtac
     4621 tgcgccatca agcagcagat ggagaaaggt cccatcgatg ccataacagg cgaggcccgc
     4681 tactccttaa gtgaggacaa gctcatccgt cagcagatcg actataagac cctgactctg
     4741 cattgtgtgt gcccggagag tgagggcagt gcccaggtcc cggtgaaggt tcttaactgt
     4801 gatagcatca cccaggccaa agacaagctg ttggataccg tgtacaaggg tattccatac
     4861 tctcagcgcc ccaaagctga ggacatggac ttggaatggc gccagggccg tatggcccga
     4921 atcatcctcc aagatgagga tatcactaca aagattgagt gtgattggaa gaggatcaac
     4981 tcactggctc actaccaggt gactgatggt tccttagtag cactggtgcc caaacaagtg
     5041 tctgcctata acatggccaa ctcattcacc ttcacccgtt cacttagtcg ctatgagagt
     5101 ttgctccgtg ctgccagcag cccagatagc ctccgttccc gagcacctat gctcacacct
     5161 gaccaggagg cgggcaccaa gctgtggcat ctggtgaaga accacgacca tgctgatcac
     5221 cgagagggag accgtggcag caagatggtc tcagaaatat atctgacaag gctgctggcc
     5281 accaagggca cgttgcagaa gtttgtggat gacttgtttg aaactgtgtt cagtacagcc
     5341 caccggggct cagccttacc cttggccatc aagtacatgt ttgacttcct ggatgaacag
     5401 gctgaccagc gccagatcag tgaccctgat gtgcgccaca cctggaaaag caactgcttg
     5461 cctctgcgtt tctgggtgaa tgtgatcaag aacccacaat tcgtgtttga catccacaag
     5521 aatagcatca cagatgcctg cctctctgtg gtagcccaga ccttcatgga ctcctgttcc
     5581 acatcagagc accgcctggg caaggactca ccttccaaca agctgctcta tgccaaggat
     5641 attcccaatt acaagagctg ggtggagagg tactaccgag atattgcaaa gatggcatcc
     5701 atcagtgacc aggacatgga cgcctactta gtggagcagt cccgcctcca tgccaatgac
     5761 ttcaatgtcc taagtgcact cagtgagctc tacttctatg tcaccaagta ccgtcaggag
     5821 atcctcacct cgctggaccg agatgcctct tgtcggaagc ataagcttcg acagaagctg
     5881 gagcagatca tcaccttggt gtccagcagc agctgagtgg ggagatggtg aggagggggc
     5941 ttctcacttc tgagccatcc tcccagtcgg gggagtgtct ggctctagcc tgggtttcca
     6001 gggctgagac ccagatctgg tgttgttggg gaggttacca agccaagatg cccatcgcac
     6061 ctgggccccc ttcattagtg ccttgctttg ggccctgcag ggggagggga tgacaggacc
     6121 aagcttcccc caccagcagc agcaatatcc ccaccctctt gccctggtgt tcccatgtca
     6181 gaagagccct tgaccacctt gctctgacat cctacccacc tatttattaa tgtaattcta
     6241 ccttaatttc catatgtaaa tatatatgcc ccatgggatg ttactagcct cacagacctc
     6301 ttccttggtt gatctgggtc ttgtttcctg ttctggttac tttgtgatat tgcaagcctt
     6361 ggctcagcct ctggtatctc agctttgctg tgtcaggccc cacttgtcta aaaagagatc
     6421 ctcagtacca gcagcattca gggtttgatg atgcatctga agctgccctc agattgtcca
     6481 ggtcaggcca ggccaatgtc ccttttcaga tatctcagaa gtcagaccac attttcatgg
     6541 ggcctgccgt ctctgagaga actatagcca ggctgtgatt gggcctgatg tgggcctggg
     6601 cctctgggac attccttgtg tccctactgc caaatttcct tagtgttgta ggcacttgcc
     6661 ctgaaacctc tcagcctcag ctgccccatc atatgcccgt ccgtaagggc caaggtggca
     6721 gtgccttact gttttgtgtc tcctgcttcc tctgaggaat ctggccctgt ctgatagtcc
     6781 cagaccctca gttcactctt cttttgttgc atgagttttt ctttgttgta attttttcct
     6841 aattaaatgt cgggaaatgg ggtcaatgca tgtctttgtc tttggagaaa gtgggtaggc
     6901 ctgttgggct atggatgaac tagattccca ttatgggaaa aaatgtaact cgataggact
     6961 tgtaatgatt tgaggaaggc catgaccatg tacaatccat taggcaaccc ctgtggctat
     7021 agcttcaaga ctgaataaat ctacttcctt cttgca
//
