LOCUS       XM_002729398            8971 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus plexin A1 (Plxna1), mRNA.
ACCESSION   XM_002729398
VERSION     XM_002729398.6
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086022) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_002729398.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8971
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..8971
                     /gene="Plxna1"
                     /note="plexin A1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 17 ESTs, 209 long SRA
                     reads, 8 Proteins"
                     /db_xref="GeneID:362398"
                     /db_xref="RGD:1560871"
     CDS             153..5891
                     /gene="Plxna1"
                     /codon_start=1
                     /product="plexin-A1"
                     /protein_id="XP_002729444.2"
                     /db_xref="GeneID:362398"
                     /db_xref="RGD:1560871"
                     /translation="MMLTLIGPEYLGLRPQPTMPLPPLSPRTLLLLLLLLLRNVWIAI
                     SSPPAGLGPQPAFRTFVASDWGLTHLVVHEQTGEVYVGAVNRIYKLSGNLTLLRAHVT
                     GPVEDNEKCYPPPSVQSCPHGLGSTDNVNKLLLLDYAANRLLACGSASQGICQFLRLD
                     DLFKLGEPHHRKEHYLSSVREAGSMAGVLIAGPPGQGQAKLFVGTPIDGKSEYFPTLS
                     SRRLMANEEDADMFGFVYQDEFVSSQLKIPSDTLSKFPAFDIYYVYSFRSEQFVYYLT
                     LQLDTQLTSPDAAGEHFFTSKIVRLCVNDPKFYSYVEFPIGCEQAGVEYRLVQDAYLS
                     RPGKALAKQLGLAEDEDVLFTVFAQGQKNRVKPPKESALCLFTLRAIKEKIKERIQSC
                     YRGEGKLSLPWLLNKELGCINSPLQIDDDFCGQDFNQPLGGTVTIEGTPLFVDKEDGL
                     TAVAAYDYQGRTVVFAGTRSGRIRKILVDLANPSGRPALAYESVVAQEGNPILRDLVL
                     SPNHQYLYAMTEKQVTRVPVESCVQYTSCELCLGSRDPHCGWCVLHSICSRQDACERA
                     EEPQRFASDLLQCVQLTVQPRNVSVTMSQVPLVLQAWNVPDLSAGVNCSFEDFTETES
                     ILEDGRIHCHSPSAREVAPITQGQGDQRVVKLYLKSKETGKKFASVDFVFYNCSVHQS
                     CLACVNGSFPCHWCKYRHVCTNNAADCAFLEGRVNMSEDCPQILPSTHIYVPVGVVKP
                     ITLAARNLPQPQSGQRGYECLFHIPGNPARVTALRFNSSSLQCQNSSYSYEGNDVSDL
                     PVNLSVVWNGNFVIDNPQNIQAHLYKCPALRQSCGLCLKADPRFECGWCVAERRCSLR
                     HHCPADSPASWMHAHHGSSRCTDPKILKLSPETGPRQGGTRLTITGENLGLRFEDVRL
                     GVHVGKVLCSPVESEYISAEQIVCEIGDASTLRAHDALVEVCVRDCSLHYRALSPKRF
                     TFVTPTFYRVSPSRGPLSGGTWIGIEGSHLNAGSDVAVSIGGRPCSFSWRNSREIRCL
                     TPPGQTPGSAPIVININRAQLSNPEVKYNYTEDPTILRIDPEWSINSGGTLLTVTGTN
                     LATVREPRIRAKYGGIERENSCMVYNDTTMVCRAPSIDNPKRSPPELGERPDEIGFIM
                     DNVRTLLVLNSSSFLYYPDPVLEPLSPTGLLELKPSSPLILKGRNLLPPAPGNSRLNY
                     TVLIGSTPCILTVSETQLLCEAPNLTGQHKVTVRAGGFEFSPGMLQVYSDSLLTLPAI
                     VGIGGGGGLLLLVIVAVLIAYKRKSRDADRTLKRLQLQMDNLESRVALECKEAFAELQ
                     TDIHELTSDLDGAGIPFLDYRTYAMRVLFPGIEDHPVLKEMEVQANVEKSLTLFGQLL
                     TKKHFLLTFIRTLEAQRSFSMRDRGNVASLIMTALQGEMEYATGVLKQLLSDLIEKNL
                     ESKNHPKLLLRRTESVAEKMLTNWFTFLLYKFLKECAGEPLFMLYCAIKQQMEKGPID
                     AITGEARYSLSEDKLIRQQIDYKTLTLNCVNPEHENAPEVPVKGLNCDTVTQVKEKLL
                     DAVYKGVPYSQRPKAGDMDLEWRQGRMARIILQDEDVTTKIDNDWKRLNTLAHYQVTD
                     GSSVALVPKQTSAYNISNSSTFTKSLSRYESMLRTASSPDSLRSRTPMITPDLESGTK
                     LWHLVKNHDHLDQREGDRGSKMVSEIYLTRLLATKGTLQKFVDDLFETIFSTAHRGSA
                     LPLAIKYMFDFLDEQADKHQIHDSDVRHTWKSNCLPLRFWVNVIKNPQFVFDIHKNSI
                     TDACLSVVAQTFMDSCSTSEHKLGKDSPSNKLLYAKDIPNYKSWVERYYADIAKMPAI
                     SDQDMSAYLAEQSRLHLSQFNSMSALHEIYSYIAKYKDEILVALEKDEQARRQRLRSK
                     LEQVVDTMALSS"
     polyA_site      8971
                     /gene="Plxna1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agccacgcag cggagcggag cccgggcgcg gcggcctcgg cctgggcggc ctgcgcggcg
       61 tgggcggccc cgcagagggg cgagcggcgg ggcgcaacga tggccagcgg cgggacgcgc
      121 ccggggttgg cggggccaag aaacccagtc ccatgatgct cacccttata ggacctgaat
      181 accttggctt gaggccccag cccaccatgc cactgccacc tctgagccct cggacactgc
      241 tgctgctctt gctgctgttg ctgaggaatg tgtggatagc catcagctca cccccagctg
      301 gtttgggtcc acaacctgct ttccgcacct ttgtggccag tgactggggc ctcactcacc
      361 tggtggttca tgaacagacg ggagaggtat atgttggcgc cgtgaaccgc atttacaagc
      421 tatcagggaa cctaaccctg cttcgggccc atgtgacggg tcccgtagaa gacaatgaga
      481 aatgctaccc accccccagt gtacagtcgt gcccacatgg tctgggcagc acagacaacg
      541 tcaacaagct tctactgctg gactacgctg ccaaccgcct gttggcctgt ggcagtgcct
      601 cacaaggcat ctgccagttc ctgaggttgg acgatctctt caagctgggc gagccacacc
      661 accgtaagga acactacctg tccagtgtgc gagaggctgg cagcatggcg ggagtgctca
      721 ttgccgggcc acccggccag ggccaggcca agctcttcgt gggcacaccc attgatggca
      781 aatcagagta ctttcccact ctgtccagtc gccggctcat ggccaatgag gaagatgctg
      841 acatgtttgg ctttgtgtac caggatgagt ttgtgtcatc gcagctcaag atcccttcag
      901 atacactgtc caagttccca gcctttgaca tctactatgt gtacagtttc cgcagcgagc
      961 agttcgtata ctacctcacc ctgcagctgg acacgcagct tacctcgccc gatgccgctg
     1021 gtgagcactt cttcacctcc aagattgtac ggctatgtgt gaatgacccc aagttctact
     1081 cttacgtgga gttccccatt ggctgtgaac aggctggagt ggagtaccgc ctggtgcagg
     1141 acgcctatct gagcaggcca ggaaaagccc tggccaagca gctgggcctt gctgaggatg
     1201 aggacgtgtt gttcacagtg tttgcacagg gccagaagaa ccgtgtgaag ccacccaagg
     1261 agtcggcgct atgcctgttc acactgaggg ccatcaagga gaaaatcaag gagcgcatcc
     1321 aatcatgcta ccgtggcgaa ggcaagctct cactgccttg gctgctcaac aaggagctgg
     1381 gctgcatcaa ctcgcccctg cagattgatg acgacttctg cgggcaggac ttcaaccagc
     1441 cacttggggg cacggtcacc atcgagggca cacccctttt tgtggacaag gaagatggcc
     1501 tgactgctgt ggctgcctat gactaccagg gccgcaccgt ggtttttgct ggcactcgca
     1561 gcggccgcat ccgcaagatt ctggtggacc tggcaaaccc cagcggcagg ccagccctgg
     1621 cttatgagag tgtggtggct caggagggca acccgatcct gcgtgacctg gtcctcagcc
     1681 ccaaccacca gtacctctat gctatgacgg agaagcaggt gacgcgggtg cctgtggaaa
     1741 gctgtgtcca gtatacttcc tgtgagctgt gcctggggtc tcgggacccc cactgtggct
     1801 ggtgtgtcct gcacagcatc tgctctaggc aggatgcctg tgagcgggca gaagagcccc
     1861 agcgttttgc ctctgacctg ctgcagtgtg tgcagttgac tgtccagcca cgcaatgtgt
     1921 cagtcaccat gtcccaggtg ccgcttgtgc tgcaggcttg gaacgtgcct gacctctcag
     1981 ctggtgtcaa ctgctccttt gaggacttca cggagactga gagcatcctg gaagatggcc
     2041 gcatccattg ccactcacct tctgcccggg aagtggcgcc catcacacag ggtcagggag
     2101 accaacgggt ggtgaagctc tacctcaagt ccaaggagac agggaagaag tttgcatctg
     2161 tggactttgt cttctataac tgcagtgttc accagtcctg cctggcatgt gtcaatggct
     2221 ccttcccctg ccactggtgc aaataccgcc acgtttgtac caacaatgcg gctgactgtg
     2281 cctttctgga aggccgtgtc aacatgtctg aggactgccc acagatcctg ccttctactc
     2341 acatctatgt gccagtgggt gtggtgaagc ccatcaccct ggccgcacgg aacctgccgc
     2401 agccacagtc aggtcagcga gggtacgagt gccttttcca catcccaggc aacccggccc
     2461 gagtcactgc actacgtttc aacagctcca gcctgcaatg ccagaactcc tcgtactcct
     2521 atgaggggaa tgatgtcagc gacctgcctg tgaacctgtc ggttgtgtgg aatggcaact
     2581 ttgtcattga caacccccag aacatccagg cccacctcta caagtgccca gccttgcgcc
     2641 agagttgcgg cctctgcctc aaggcggacc cgcgttttga gtgtggctgg tgtgtagctg
     2701 agcgccgctg ttccctacga caccactgcc cagctgactc accagcctcc tggatgcatg
     2761 cccaccacgg cagcagccgc tgcacagacc ccaagattct caagctgtcc ccagagacag
     2821 gccctcggca gggagggact cgactaacca tcaccggtga gaatctgggc ctccgttttg
     2881 aggatgtgcg gctaggcgtg cacgtgggca aggtgctttg cagccctgtg gagagcgagt
     2941 acatcagtgc agaacagatt gtgtgtgaga tcggagatgc cagcacactg cgagcccatg
     3001 atgccctggt ggaggtgtgt gtgcgggact gctccctcca ctaccgagct ctgtccccca
     3061 agcgcttcac ctttgtgaca cccaccttct accgtgtgag cccctcccgg gggcctctgt
     3121 ccggaggtac ctggattggt attgaaggga gccatctgaa tgcaggcagc gatgtagctg
     3181 tgtccattgg cggtcggccc tgctccttct cctggagaaa ctcacgagag atccgatgcc
     3241 tgacacctcc cgggcagacc cctggcagtg cccctattgt tatcaacatc aaccgtgccc
     3301 agctctccaa ccccgaggtg aagtacaact atactgaaga ccctactatc ctgaggatcg
     3361 accctgagtg gagcatcaac agtggtggga ccctcctaac agtcacaggc accaatctgg
     3421 ccaccgtccg tgaacctcga atccgggcca agtatggagg cattgagagg gaaaatagct
     3481 gcatggtgta caatgacacc accatggtgt gccgggcgcc gtctatagac aacccaaagc
     3541 gcagcccgcc agaactagga gagcggccag atgagattgg tttcatcatg gacaatgtcc
     3601 gcacgctgct ggtactcaac agctcctcat tcctttacta cccggaccct gtactggagc
     3661 cactcagccc tactgggctc ttggagctga agcccagttc cccgctcatt cttaaggggc
     3721 ggaatctcct gccacctgct cctggcaatt cccggctcaa ctacacggtg ctcatcggct
     3781 ccacgccttg tatcctcacc gtgtctgaga cacagctgtt gtgtgaagca cccaacctca
     3841 cggggcagca caaagtcacg gtgcgggcag ggggcttcga gttctcacct gggatgctgc
     3901 aggtgtactc agacagcctg ctgacactgc cggccattgt gggtatcggt ggggggggtg
     3961 gcctcttgct gctggtcatc gtggctgtgc tcatcgccta caaacgcaaa tcccgggatg
     4021 ctgaccggac ccttaagcgg ctgcagctcc agatggacaa cctggagtca cgtgtggccc
     4081 tcgagtgcaa ggaagccttt gcagagctac agacagacat ccatgagctg accagcgacc
     4141 tggatggtgc tggcatcccg ttccttgact accgcacata tgccatgcga gtgctatttc
     4201 ctgggattga ggaccatcct gtactcaagg agatggaggt gcaggccaat gtggagaagt
     4261 cgctgacact gtttggacag ctgttgacca agaagcattt cctgctaacc ttcatccgta
     4321 cactggaagc ccagcgtagc ttctctatgc gtgaccgtgg gaacgtggcc tcgctcatca
     4381 tgacggccct gcagggtgag atggagtatg ccacaggagt gctaaagcag ctgctctccg
     4441 acctcatcga gaagaacctg gaaagcaaga accaccccaa gctcctgttg aggaggaccg
     4501 aatcagtggc ggagaagatg ttaaccaact ggttcacctt ccttttgtat aagttcctta
     4561 aggagtgtgc tggggagccg cttttcatgc tgtactgtgc catcaagcag cagatggaga
     4621 agggccctat tgatgccatc acaggggagg cccgctactc tctgagcgaa gacaagctca
     4681 ttcggcagca gattgactac aagaccctga ccctgaattg tgtgaaccct gaacatgaga
     4741 atgcacctga ggtccctgtg aagggactga actgtgacac cgtgacccag gtcaaggaga
     4801 agctactaga tgctgtatat aagggtgtgc cttactcaca gcggcccaag gctggggaca
     4861 tggacctgga gtggcgccag ggccgcatgg cacgcatcat ccttcaggat gaggatgtca
     4921 ccaccaaaat tgacaatgac tggaagaggc tgaacacgct ggctcactat caggtgacgg
     4981 atgggtcatc agtggcacta gtacccaagc agacgtctgc ctacaacatc tccaactcct
     5041 ctaccttcac gaagtccctc agcagatacg agagcatgct gcgtacagcc agtagccctg
     5101 acagcctacg ctcacgaaca cccatgatca cgccagacct ggaaagtgga acaaaactgt
     5161 ggcacctggt caagaaccac gaccacctgg accaacgtga aggcgaccgt ggcagcaaga
     5221 tggtctctga gatctacctg acaaggctgc tggctactaa gggaacactg cagaagttcg
     5281 tggatgacct gtttgagacc atcttcagca cggcgcaccg tggctcagcc ctgcctctgg
     5341 ccatcaagta catgtttgac ttcttagatg agcaggccga caagcaccag atccacgact
     5401 cagatgtgcg ccatacctgg aagagcaatt gcctgcctct gcgcttctgg gtgaatgtga
     5461 ttaagaaccc tcagttcgtg ttcgacatcc acaagaacag cataacagat gcctgcctct
     5521 cagtggtagc gcagaccttc atggactcct gctccacatc agagcacaag ctgggcaaag
     5581 actcaccctc taacaagttg ctctatgcca aggacatccc caactacaag agctgggttg
     5641 aaaggtacta tgctgacatt gccaagatgc ccgccatcag tgatcaagac atgagcgcct
     5701 acctggcaga gcagtcccgg ctgcatctca gccagttcaa cagcatgagt gccctgcacg
     5761 agatctactc ctacatcgcc aagtacaagg acgagattct ggtggctctg gaaaaagatg
     5821 agcaggctcg aaggcagcgg cttcggagca aactggagca ggtggtggac acaatggcct
     5881 tgagcagctg agccctggaa atgcccaccc agcaggaggc agagcaggag ggcagcagag
     5941 gacccaagag acagcccttg gcccacctgt accaagtgcc aggtgtaggg ctgcagttgg
     6001 gtcctagccc tcgccttcct ctccctgctg tgcagggccg acttttatcg ctgtggatgt
     6061 gagggttcct gctgagccac ctctatgcct agggctcgct gccttgggcg aggattgcac
     6121 agcatggctg gtcctgccca gggatagttg ctgcttggct agagctgcta gtggctttcc
     6181 tgggagagag gtggcctctg aggggccgag ataaaaggcc aggccctcca aagggagggc
     6241 agcaggacaa gggactggac caatccacag ttcttggctt ctccagctgc taccagcagg
     6301 cagagtctga gggagaggtg agatacccaa ggctaggcca cataagtctc agccggggct
     6361 gtcccaccag cctctactct agcacccagt gcttgccacc accctcagat tcaccgcgtg
     6421 ctctgcgcgg ccaaggctgg aatgccacat ccttctgctg gggagaggcc ccactcccct
     6481 cctatggagg gcctgcagac cccacttcca agtgacacgc ggacgatggc taggcgaacc
     6541 cttctctgtc ctcagggctg tgcctctggg agcccctggt cctggggctc cagtcagagt
     6601 gcatgttccc attatttatt ccccgcctcc tgctcctgtt gcagcccacc atggagctcg
     6661 ggaggataat agcccaccat ccactaccct ctatcctcct tgccccgacg ctcccgttgg
     6721 cttccggtct ggcatctcaa cagtgtcctg gcccctctac ggtgggacat ctgggtactg
     6781 cttttaaggg aacaagaaag cctgtggtat tctgccctgg gggttggggg gcatttctgc
     6841 caccctgctg gccatggaca gtgacccaag ggaccagagg tcagctgtgt ccacctctgc
     6901 cctcaaggag caacaaggag tacattttta atggaccctg tacatatata tatgtatgta
     6961 tgtgtatata tatatatata tgtgtgtgtg gccctggccc caatggggtg ctgtacaatt
     7021 atttgaggga ggagacacgg aaaggcaatt ctgaggaacc caggtggaag agagcaaaac
     7081 caagggccct ggagctgccg tctgatgtgg cctctacttc cccagacgga agaagccact
     7141 gcccaggatt cctggtgccc tgagcttcgg gtgcagaggc tgtggacctg catgactgtg
     7201 ctagcgttta gtctgagttg atcttttcaa actgcaagtg ttgaatacta gaggtgatta
     7261 gatccttttt ttttttttaa tgttttttta attagtcatt ggagaagcaa gcaagcggcc
     7321 tattcccttt tcaagttcac ctttttgatg gtactaaaga ttataatgga ttttaaggga
     7381 cagctaactg tggccaggcc catcctcaat gctggggaca gcacactcca cgtccgcggg
     7441 ctgctagcct tgtggtccct cacactccaa gctagggagc cggtgggaca gcgtggaggt
     7501 cagtttagag ctgcgccttt atttgctatg ggacaggtgc aaggtctcag ggagcaactc
     7561 ctttgtggta gtcatgggcc tgggtaccct gggccgtgaa ttctggttag actcccaccc
     7621 catctctgtg gctcactccc tgagctaata ctggggtcag agccaaggct agccagcctg
     7681 gctatagccg tttctcagta gcccctgttg ttgcctgggg gtttacccat ggatatatcc
     7741 ctctcttcct tctgatgcct ccgggctgtg cctgggtggg agcctcagtt tcccctaaag
     7801 tcttccctgg ttgtaggctt cagatggaag cccccagttc ttccagctct gcctggacca
     7861 cgcacagctt ctaggctcat tgccttcact atccatcccc accaccctgc ccaaggctcc
     7921 agaataggcc agcctcatct gtcctaccag gccgccttgc ctgggtgggt gatgaggtgg
     7981 cttggagcag cttccccagg gcatttgttc gcaagcactt tagcatatct gtttacatgc
     8041 gaactgccct agctgttctt accatctcag cacagccatc agggccaggc ctcacctccc
     8101 tgccactact ggaactgagc tctgacatct tcttgtcctt ggtcttcaag agccatccat
     8161 cttgtggtat cctgcaaagt gttccactcc tgcctcaata tggctcggga ttggagccca
     8221 ctgcgcactg gatggtggat gctcagggcc accctctaca gtcctaggga ccagggaggt
     8281 gggcaagcac tattccagcc agcccggccc taacattctt ggtactgccg tcctgccatg
     8341 ggccccatcc ccagaagccc taacttcctg cctggtcttt ccctttgcac ccagactcag
     8401 gagtgcctgg gctattccaa gctgggcctg ggtgcctggc ctccacatgc cttgggctgg
     8461 ccctgtgctc tccagctgcc ccactctctt atggttggac agctaaacag catcagggat
     8521 gagggccttg atgtgtcccc aagagacact gcattgagtt ccaggcacag gccagcaacc
     8581 tctgttggta cagaggggcc tgaccgccac cctctactcc agttccccca gtttggatct
     8641 ggtggctcac atcggtgcta cacaagctag agtagatata tttagagaga gaaagatatt
     8701 tttaaggtga aacccatgat tagctgtcct ttaatgccgc agaacactcc ctcttacctg
     8761 cttcccccaa cccccaccca cccaaaaaaa actggtcatt tggatggtct aagtagatca
     8821 ggcctcggcc attgcttctc tggaagcggc agagccaata cgctcagcca tcagatgtgt
     8881 aaatataccg ctatttccta ttttacggtt cttcagattt agtacttgta aataaacaca
     8941 cattaaggag agattaaaca tttttgctaa a
//
