LOCUS       NM_001108422            2760 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus plexin domain containing 2 (Plxdc2), mRNA.
ACCESSION   NM_001108422 XM_001073244 XM_341567
VERSION     NM_001108422.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2760)
  AUTHORS   Prunotto M, Farina A, Lane L, Pernin A, Schifferli J, Hochstrasser
            DF, Lescuyer P and Moll S.
  TITLE     Proteomic analysis of podocyte exosome-enriched fraction from
            normal human urine
  JOURNAL   J Proteomics 82, 193-229 (2013)
   PUBMED   23376485
REFERENCE   2  (bases 1 to 2760)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC168868.1.
            
            On Sep 4, 2008 this sequence version replaced NM_001108422.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168868.1, SRR8487226.171243.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2760
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.3"
     gene            1..2760
                     /gene="Plxdc2"
                     /note="plexin domain containing 2"
                     /db_xref="GeneID:361282"
                     /db_xref="RGD:1305962"
     exon            1..880
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     CDS             769..2361
                     /gene="Plxdc2"
                     /note="plexin domain-containing protein 2"
                     /codon_start=1
                     /product="plexin domain-containing protein 2 precursor"
                     /protein_id="NP_001101892.1"
                     /db_xref="GeneID:361282"
                     /db_xref="RGD:1305962"
                     /translation="MARFPRAHLAAAGVMLLCHFLTDRFQFAHGEPGHHMNDWKYVVA
                     NTSPQSEEGVEVDSQAYSHRWKRNVDPFKAVDTNRASMGQDSPESRGFPDLLLDDGQD
                     NTTQIEEDTDHNYYISRIYGPADSASRDLWVNIDQMEKDKVKIHGILSNTHRQAARVN
                     LSFDFPFYGHFLNEVTVATGGFIYTGEVVHRMLTATQYIAPLMANFDPSVSRNSTVRY
                     FDNGTALVVQWDHVHLQDNYNLGSFTFQATLLMDGRIIFGYKEIPVLVTQISSTNHPV
                     KVGLSDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNISAVEMTPLPTCLQFNGC
                     GPCVSSQIGFNCSWCSKLQRCSSGFDRHRQDWVDSGCPEEVQSKEKMCENTEPGETSQ
                     TTTTAQTTTTQFRVLTTTRRAVTSHMPTSLPTEDDTKIALHLKDSGASTDDSAAEKKG
                     GTLHAGLIVGILILVLIIAAAILVTVYMYHHPTSAASIFFIERRPSRWPAMKFRRGSG
                     HPAYAEVEPVGEKEGFIVSEQC"
     exon            881..1092
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1093..1239
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1240..1309
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..1432
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1433..1551
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1552..1651
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1652..1747
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1748..1829
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1830..1896
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1897..2044
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            2045..2083
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            2084..2244
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
     exon            2245..2736
                     /gene="Plxdc2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctggggctcc gcggtgttcg gagccacctc cttcctcacc cggagaggct ctctcagcag
       61 gctgcagcct cactttcctt tggtttttct ctttctttaa aaaaaccccc cacccctctt
      121 ctgatcccag cagctggtcc ttccccggct ccactctccg gagctgccca tccttccggc
      181 tgccggcgag gacgcacgct cagccttagg cgaagcaaag aagaaaaact tgtcggaggg
      241 gtttctccag cctccacgaa cctccttctc tcgctaaccc caaccgcccg ccggggccag
      301 ccctaagtct gggaaagttc caccggtgct cagcgccctc ttggatctgg agccgcacgg
      361 gcgcagccag tggaattaga tctgttttga acccagtgga gcgcgtcgcg ggcgctcgga
      421 agtcaccgtc tgtgggcgcc cgggtggcgc tgcctgtgag gacccgggag tttgcgggac
      481 cgactgcaag tgacctttcc tctccgcatt tggttggttc tgtctcggct ggggctgcga
      541 gggtgacaag ttgcggtgag agctcccgaa gtttggagag ggctgggtcg tctctccttc
      601 gcttctctgg tacccggagt gaaatcctag cgaaactgtc agaggcctcc ggatcccacc
      661 ccagactcac cggcagacac tccgccgcgt cgccccatcc ccaaggagaa ccccggagcc
      721 cagggcctca aggaaagatc gctgggcagg ggaggtcgcg gcagcggcat ggcgaggttc
      781 ccgagggccc acctggcggc agcaggagtt atgttacttt gtcacttttt aacagaccgg
      841 ttccagttcg cccacgggga gcctggacac catatgaatg actggaagta tgtagttgca
      901 aacacctcgc ctcagagtga agagggggtg gaagtggact ctcaagcata cagccaccgg
      961 tggaaaagaa acgtggaccc ttttaaagct gtagacacaa accgagccag catgggccaa
     1021 gactctccgg agtccagagg cttccccgac ctgctactgg atgacgggca ggacaacacc
     1081 acccagatcg aggaggacac agatcacaat tactacattt ctcggatata tggcccagcg
     1141 gattctgcca gccgggatct gtgggtgaac atagaccaaa tggaaaagga caaagtgaag
     1201 attcacggga tactttccaa cactcatcgg caagctgcaa gagtgaatct gtccttcgat
     1261 tttccatttt atggtcattt tctaaatgaa gtcactgtgg caactggggg tttcatatac
     1321 actggagaag ttgtgcatcg aatgctgaca gctacacagt acatagcccc tttaatggca
     1381 aattttgatc ccagtgtatc cagaaattca accgtcagat actttgataa tggcacagct
     1441 cttgttgtcc agtgggacca tgtccacctg caggataatt acaacttggg aagcttcaca
     1501 ttccaggcca cactcctcat ggatgggcgt atcatcttcg gatacaaaga aattccggtc
     1561 ttggttacac agataagctc caccaaccat ccagtcaaag tcgggttgtc tgatgcattt
     1621 gtcgtagtcc acaggatcca gcaaataccc aatgttcgaa gaagaacaat ttatgaatat
     1681 caccgtgtag aactacagat gtccaaaatt accaacattt cagctgtgga gatgacccca
     1741 ctcccaacat gtctccaatt caatggttgt ggcccttgtg tgtcctcgca gattggtttc
     1801 aactgcagtt ggtgtagcaa acttcaaaga tgctcgagtg gattcgatcg ccatcggcag
     1861 gactgggtgg acagtggatg ccctgaagag gtacagtcaa aggagaagat gtgcgagaac
     1921 acagagccag gggagacatc tcaaactact acgaccgcac aaacaaccac cacgcaattc
     1981 agggtcctga ccaccaccag gagagctgtg acgtcgcaca tgcctaccag cctgcctaca
     2041 gaagatgata cgaagatagc actgcatctc aaagacagcg gagcctccac agatgacagt
     2101 gccgccgaaa agaaaggagg aaccctccat gcaggcctca tcgttggaat cctcatcttg
     2161 gtcctcatta tcgcagcagc cattctggtg acagtttaca tgtatcacca cccaacatca
     2221 gcagccagca tcttcttcat tgagagacgc ccaagcagat ggccagcaat gaagtttcga
     2281 agaggatcgg gacatcctgc ctatgcggaa gttgaaccag ttggagagaa agaaggtttt
     2341 attgtatcag agcagtgcta agattttagg acagagcagc accagtactg gcttacaggt
     2401 gttaagacta aaattttgct tatgcgttta agaaaacaga cacacaccca ccaccacaca
     2461 taaaggagcc ctaaactgct gtagacagaa gggcgacgag atttctggac aagcccagcc
     2521 caggaacgtt gaaaggaaaa ctcagacttg tacaagacac catgtacact gaataaagaa
     2581 ttccctagcg gaatgacatt catggttcac aaggaacatc tcctgtggac ttgccaggag
     2641 tgtgacgaga tgacgatgct tttggtttag gtgcagggtt gcaaagggat caaggaaaaa
     2701 aatatgataa taaataaagc tttagttcac aagggaaaaa aaaaaaaaaa aaaaaaaaaa
//
