LOCUS       NM_001005881            2870 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus phospholipid phosphatase related 2 (Plppr2),
            mRNA.
ACCESSION   NM_001005881 XM_217089
VERSION     NM_001005881.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2870)
  AUTHORS   Andreev,D.E., O'Connor,P.B., Zhdanov,A.V., Dmitriev,R.I.,
            Shatsky,I.N., Papkovsky,D.B. and Baranov,P.V.
  TITLE     Oxygen and glucose deprivation induces widespread alterations in
            mRNA translation within 20 minutes
  JOURNAL   Genome Biol 16 (1), 90 (2015)
   PUBMED   25943107
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2870)
  AUTHORS   Savaskan,N.E., Brauer,A.U. and Nitsch,R.
  TITLE     Molecular cloning and expression regulation of PRG-3, a new member
            of the plasticity-related gene family
  JOURNAL   Eur J Neurosci 19 (1), 212-220 (2004)
   PUBMED   14750979
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001005881.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.2316779.1,
                                           SRR26360181.1030655.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-394               JAXUCZ010000008.1  28743151-28743544
            395-564             JAXUCZ010000008.1  28744721-28744890
            565-644             JAXUCZ010000008.1  28745639-28745718
            645-833             JAXUCZ010000008.1  28747079-28747267
            834-969             JAXUCZ010000008.1  28747399-28747534
            970-1241            JAXUCZ010000008.1  28750089-28750360
            1242-1418           JAXUCZ010000008.1  28751154-28751330
            1419-1525           JAXUCZ010000008.1  28753390-28753496
            1526-1577           JAXUCZ010000008.1  28753821-28753872
            1578-2870           JAXUCZ010000008.1  28754263-28755555
FEATURES             Location/Qualifiers
     source          1..2870
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q13"
     gene            1..2870
                     /gene="Plppr2"
                     /gene_synonym="Lppr2; Prg-4"
                     /note="phospholipid phosphatase related 2"
                     /db_xref="GeneID:300443"
                     /db_xref="RGD:1597171"
     exon            1..394
                     /gene="Plppr2"
                     /gene_synonym="Lppr2; Prg-4"
                     /inference="alignment:Splign:2.1.0"
     exon            395..564
                     /gene="Plppr2"
                     /gene_synonym="Lppr2; Prg-4"
                     /inference="alignment:Splign:2.1.0"
     exon            565..644
                     /gene="Plppr2"
                     /gene_synonym="Lppr2; Prg-4"
                     /inference="alignment:Splign:2.1.0"
     CDS             579..1610
                     /gene="Plppr2"
                     /gene_synonym="Lppr2; Prg-4"
                     /EC_number="3.1.3.4"
                     /note="plasticity related protein 4; phospholipid
                     phosphatase-related protein type 2"
                     /codon_start=1
                     /product="lipid phosphate phosphatase-related protein type
                     2"
                     /protein_id="NP_001005881.2"
                     /db_xref="GeneID:300443"
                     /db_xref="RGD:1597171"
                     /translation="MAGGRPHLKRSFSIIPCFVFVESVLLGIVILLAYRLEFTDTFPV
                     HTQGFFCYDSAYAKPYPGPEAASRAPPALIYALVTAGPTLTILLGELARAFFPAPPSA
                     SPVSGESTIVSGACCRFSPPLRRLVRFLGVYSFGLFTTTIFANAGQVVTGNPTPHFLS
                     VCRPNYTALGCPPPSPDRPGPDRFVTDQSACAGSPSLVAAARRAFPCKDAALCAYAVT
                     YTAMYVTLVFRVKGSRLVKPSLCLALLCPAFLVGVVRVAEYRNHWSDVLAGFLTGAAI
                     ATFLVTCVVHNFQSRPLSGRRLSPWEDLSQAPTMDSPLEKNPRPAGRIRHRHGSPHPS
                     RRTVPAVAT"
     exon            645..833
                     /gene="Plppr2"
                     /gene_synonym="Lppr2; Prg-4"
                     /inference="alignment:Splign:2.1.0"
     exon            834..969
                     /gene="Plppr2"
                     /gene_synonym="Lppr2; Prg-4"
                     /inference="alignment:Splign:2.1.0"
     exon            970..1241
                     /gene="Plppr2"
                     /gene_synonym="Lppr2; Prg-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1418
                     /gene="Plppr2"
                     /gene_synonym="Lppr2; Prg-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1419..1525
                     /gene="Plppr2"
                     /gene_synonym="Lppr2; Prg-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1526..1577
                     /gene="Plppr2"
                     /gene_synonym="Lppr2; Prg-4"
                     /inference="alignment:Splign:2.1.0"
     exon            1578..2870
                     /gene="Plppr2"
                     /gene_synonym="Lppr2; Prg-4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttcaaatctc tgccaacgcg tcctgccccg cctcattgag ttatgcaaat gaacgtcata
       61 tagccctgcc ccgttattct cacaactccc cgcccctctg tgttatgcaa atgagaccca
      121 aaggccccgc ccacctggtg aagaagagac ttgggcccgc cccccacggg ttatgcaaat
      181 gatggctcct gcccccgccc cactgggtta tgcaaataag gcaccctgtg gccccgcccc
      241 tgcctcggcc acggagtctg cgcggagcgg caagtccggc ggtccaggct tcttctcgtt
      301 gtccgcctgc ctgaccagcg atctgtctga ctgttctgcg gcgccgggac cgtctagagg
      361 gagcgagggt tcaggcggcg gcggcctaga cagggcctca atggagccct ggatgtacag
      421 tgcccaccct cacctgcctg ggcctcaatt tccacatcgg tgcaatggag atgagtgtcc
      481 ttgccctgct gacctcaagg agtgtctgtg agttggtggt ggtggaggtg gatgcctgtc
      541 ggaagcccta gggcactttc acaggcccag gtgtcaccat ggctggaggg agacctcacc
      601 tgaagcggag tttctccatc atcccctgct ttgtcttcgt ggagtctgtg ttgctgggca
      661 tcgtcatcct tcttgcgtac cgcctggagt tcacggacac cttccccgtg cacacgcagg
      721 gcttcttctg ctacgacagc gcttatgcca agccgtaccc tgggcccgag gctgccagcc
      781 gagcaccccc cgccctcatc tatgccctgg tcactgctgg gcccaccctc acgatccttc
      841 tgggggaact ggcccgtgcc ttcttccctg cgccaccctc cgccagtcct gtcagtgggg
      901 aaagcaccat tgtgtccggg gcctgctgcc gcttcagtcc cccactgcgg aggctggtcc
      961 gattcctggg ggtgtactct tttggcctct tcaccacgac catctttgca aatgcgggac
     1021 aagtggtgac cggtaacccc acacctcact tcctgtcggt atgtcgcccc aactacacgg
     1081 ccctgggttg cccaccaccg tctcctgacc ggccagggcc tgaccgcttc gtcaccgacc
     1141 agagcgcctg tgcaggcagt cccagcttgg tggccgccgc acgccgcgcc ttcccctgca
     1201 aggatgcggc cctgtgcgcc tacgccgtca cctatacagc gatgtacgtg accctagtgt
     1261 ttcgcgtgaa gggttctcgc ctagtgaaac cttccctctg cctggccctg ctgtgccccg
     1321 ccttcctggt gggcgtggtc cgcgtggcag agtatcgcaa ccattggtcg gacgtgctgg
     1381 ctggctttct gactggagca gccatagcca cctttttggt cacctgtgtt gtgcacaatt
     1441 tccagagccg acccctctct ggtcgaaggc tctccccctg ggaggacctc agccaggccc
     1501 ccaccatgga cagccccctc gaaaagaacc cgagacctgc aggccgcatt cgacaccggc
     1561 acggctcacc ccatccaagc cgcagaactg tgcccgccgt ggccacctga ttcccagctg
     1621 tgtgtcctcc agggcaccag cgatgtgctc ctcgccccgt gtgccccgcc ctcgactgag
     1681 gtctgagcca acacccctgc ctctgccgct gccccttcct gcaccgactc ccagccaggg
     1741 tccctcgcct tcctcccctg gacccggggg cccaggtggg ggaggtgggc ggggccggaa
     1801 gctgctgctc cccacgcccc tgctacggga cctgtacacc ctcagtggac tccatccctc
     1861 ccctttccac cgtgacaact tcagccccta tctgtttgcc agccgcgacc acctgctgtg
     1921 agatccacca cctaaaatct acccagtgtc ccccgtttcc tccctgccat acgtgcgtgt
     1981 ggcacgtgag tgctaaaggc ccctgccctc caaaccagcc aggtccagcg tcagaagatg
     2041 gctgtaaggg acgcttcaag gcagggaatc tcttggctgc tctttggcct tctgggacat
     2101 ctgggtgggc aaaaataacc agttgggccc atgtccctag gattgccctt ttaacggctg
     2161 aagcttgacc taactagcca ttgcctatcc agtgagagct ccgagttctc agaattcaac
     2221 ccaaaagttt acaaaagttt atgggaacct ctcacttctt agcttcctca agcaagaggg
     2281 tgctactctg gccagtgttc agtgtctaaa cagccaataa gagcccttgg cgttcagaat
     2341 tgccgagagt gggtgggaat gattccagtc aatgggggac cgcccgtgtc aaagccaagt
     2401 caaagccaag gagagctatc cagtctctcc ccgggaacac ggagtccagc tggagggtgg
     2461 ggggggcagg ctcccccaca gcagggtcct gcggcacccc ttcccttcta gcccttcccc
     2521 caggtgcacc atctcatacc ctccaactcc ctacttatgt agggcttgcc ccagttcaca
     2581 ggttttggag ttccggatgc tgtctccctt ggctgtgcct agggcacccc ccccaaacct
     2641 tctgttattt attagggctg tggaaaaaga ctttcttttc ttggaaccca accttcttct
     2701 tcacactgcc cccatgcctc agcctcatgc agttgtgcca tcttgggggg catgggtgga
     2761 gcagaagggg gtttccctac cctgaatagc caaaagcagt gggcagatga gacactgtcc
     2821 ccctttcctg ccccctcctc atctttaata aagacctgtt tgtaacagaa
//
