LOCUS       NM_201271               2532 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus phospholipid phosphatase related 1 (Plppr1),
            mRNA.
ACCESSION   NM_201271 XM_232976
VERSION     NM_201271.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2532)
  AUTHORS   Savaskan,N.E., Brauer,A.U. and Nitsch,R.
  TITLE     Molecular cloning and expression regulation of PRG-3, a new member
            of the plasticity-related gene family
  JOURNAL   Eur J Neurosci 19 (1), 212-220 (2004)
   PUBMED   14750979
  REMARK    GeneRIF: PRG-3 is expressed in brain and shows a specific
            expression pattern during brain development and is found mostly in
            neuronal cell layers and expressed at embryonic day 16. In mature
            brain strongest PRG-3 expression occurs in hippocampus and
            cerebellum
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Feb 10, 2021 this sequence version replaced NM_201271.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.27301.1,
                                           SRR26360176.1488563.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-375               JAXUCZ010000005.1  68232963-68233337
            376-483             JAXUCZ010000005.1  68387546-68387653
            484-672             JAXUCZ010000005.1  68470779-68470967
            673-805             JAXUCZ010000005.1  68487853-68487985
            806-1056            JAXUCZ010000005.1  68505765-68506015
            1057-1233           JAXUCZ010000005.1  68508805-68508981
            1234-1365           JAXUCZ010000005.1  68512158-68512289
            1366-2532           JAXUCZ010000005.1  68519618-68520784
FEATURES             Location/Qualifiers
     source          1..2532
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q22"
     gene            1..2532
                     /gene="Plppr1"
                     /gene_synonym="Lppr1; Prg-3"
                     /note="phospholipid phosphatase related 1"
                     /db_xref="GeneID:298062"
                     /db_xref="RGD:1303116"
     exon            1..375
                     /gene="Plppr1"
                     /gene_synonym="Lppr1; Prg-3"
                     /inference="alignment:Splign:2.1.0"
     exon            376..483
                     /gene="Plppr1"
                     /gene_synonym="Lppr1; Prg-3"
                     /inference="alignment:Splign:2.1.0"
     CDS             421..1398
                     /gene="Plppr1"
                     /gene_synonym="Lppr1; Prg-3"
                     /note="plasticity-related protein 3; plasticity-related
                     gene 3 protein; plasticity related gene 3; lipid phosphate
                     phosphatase-related protein type 1; inactive
                     2-lysophosphatidate phosphatase PLPPR1"
                     /codon_start=1
                     /product="phospholipid phosphatase-related protein type 1"
                     /protein_id="NP_958428.2"
                     /db_xref="GeneID:298062"
                     /db_xref="RGD:1303116"
                     /translation="MAVENNTQRSYSIIPCFIFVELVIMAGTVLLAYYFECTDTFQVH
                     IQGFFCQDGDLMKPYPGTEEESFISPLVLYCVLAATPTAIIFIGEISMYFIKSTRESL
                     IAEEKMILTGDCCYLSPLLRRIVRFIGVFAFGLFATDIFVNAGQVVTGHLTPYFLTVC
                     QPNYTSTDCRAHHQFINNGNICTGDLEVIEKARRSFPSKHAALSIYSALYATMYITST
                     IKTKSSRLAKPVLCLGTLCTAFLTGLNRVSEYRNHCSDVIAGFILGTAVALFLGMCVV
                     HNFKGTQGSASKPKPEDPRGVPLMAFPRIESPLETLSAQNHSASMTEVT"
     exon            484..672
                     /gene="Plppr1"
                     /gene_synonym="Lppr1; Prg-3"
                     /inference="alignment:Splign:2.1.0"
     exon            673..805
                     /gene="Plppr1"
                     /gene_synonym="Lppr1; Prg-3"
                     /inference="alignment:Splign:2.1.0"
     exon            806..1056
                     /gene="Plppr1"
                     /gene_synonym="Lppr1; Prg-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1057..1233
                     /gene="Plppr1"
                     /gene_synonym="Lppr1; Prg-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1234..1365
                     /gene="Plppr1"
                     /gene_synonym="Lppr1; Prg-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1366..2532
                     /gene="Plppr1"
                     /gene_synonym="Lppr1; Prg-3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccttttgctc cttccctttc attaaacaaa cgggaggtcc caaaacctgg acccaacggc
       61 gagaggaggc agcagaggag gcttagcaaa gggatggtcg ccgaagggaa tctgtgatcc
      121 cgcgcactcc tgcccccacc ccgcgtgtga gcacacacac acacacacac acacacacac
      181 acacacacac acacacaccg cacaaacaca cacgctcgca tacgcccgtg ccgcgcactc
      241 gcccgctcgc tctcccacgc aagcggaatg cagcagcgcc tgaggagctt gtctgcagcc
      301 gctgcctgaa tgcacctcgc cgccggctac cggtccgccc aatagggcgc aagggaggaa
      361 gcttggccgc caaagcctgg attatttctg tcagtgcagt ctcaccacat ggtttgagaa
      421 atggctgtag agaacaacac ccaacgcagt tactccatca tcccatgttt tatatttgtt
      481 gagcttgtca tcatggctgg gacagtgctg cttgcctact acttcgaatg cactgacacc
      541 tttcaggtgc atatccaagg attcttctgt caggatggag acttaatgaa gccttacccg
      601 gggacagagg aggaaagctt catcagccct ctggtgctct actgcgttct ggctgccacc
      661 ccaactgcta ttattttcat tggtgaaata tctatgtatt tcataaagtc aacaagggag
      721 tccctgattg ctgaggagaa aatgatcctg acgggggact gctgctacct gagcccctta
      781 ctccgaagga tcgtcaggtt cattggggta tttgcatttg gactttttgc tactgacatt
      841 tttgtaaacg ccgggcaagt agtcactggt cacctaacac cgtacttcct gacagtgtgc
      901 cagccaaact ataccagtac agactgccgg gcacaccacc agttcatcaa caatggcaac
      961 atctgcactg gggacctgga agtgatagaa aaagctcgga ggtcctttcc ttccaaacac
     1021 gctgctctga gtatttactc cgccttatat gccacgatgt acatcacaag cacaatcaag
     1081 acaaagagca gtcggctggc caagccagtg ctgtgcttgg ggaccctctg tacagccttc
     1141 ctgacaggcc tcaatcgggt ctcagagtac cggaaccact gttcagacgt gattgccggc
     1201 ttcatcctgg gcaccgcagt agccctgttt ttgggcatgt gtgtggttca taactttaaa
     1261 ggaactcaag gctctgcttc caaacccaaa cctgaggatc cccgtggagt tcctctgatg
     1321 gctttcccaa ggatagagag cccgctggaa accttaagtg cacagaatca ctcagcctcc
     1381 atgacagaag tcacctgaga caatgaagac atgcagctac tcggcgtttg tttggtttga
     1441 gttttgtgtt ttcggcagcc ttccagttca atacttcaaa acacacagtt actccagtca
     1501 aactgggaag acaagtgtca catttatcta gttagaggct aatgttttgt acattttttt
     1561 tgtatgaagg agtgatgtag cttgccctga ttctattttt cttttctttt ggtcagcttt
     1621 aatatattta tgccagattt ttaaaaccga caaaattttc ctcttgttca agtgtgcatt
     1681 gaagaaccac atttattcaa ttgttgttgt tgtttggtga tatttgtaca caaaattttt
     1741 ctcagtttta tagacacaaa taaagcgaac gacccacttt aaacctttgt taccacggct
     1801 gctgcctcct ccagaagttt tgaaatttaa tgaaagttaa acttttgagt tacaggaagg
     1861 accatggtgg ttaattgtaa atctcaaaat caattgtgga aaaaaaaata ttggaagaga
     1921 acattgtgtt ctgttctgtt aatagttgac agtgttccaa gttaaaacat caggggcata
     1981 ctaagtgaaa agtcctagct gcctaactat tggcagagaa gcctatattt gggcggggtg
     2041 ggggggggag tgtgctttgg ttatatgatg ctttcttaga aaatggcctc gatcaccttt
     2101 ggagcacagg gtcggtctga aattctgacc ttgggcaggt gacactgtaa cactgtagcc
     2161 tcctatccaa gagagcagct ggccccagcc tttcctgtca actcaacagt tttgtatatc
     2221 acattgtatg gactttttat gaaaaagaat attttacagt ttgcacagta ttattttaca
     2281 gaaaggccat cagagcacct acgtgtagac cccagagcaa cagcttcact gtggggcttt
     2341 taactgttct tagatttttt aactgcatcc cattttttct agcatgatga taatgtgtcc
     2401 ctcctttggg agaaggagct ccctctctgt gtctatcaaa atgtttcctt gactcacccg
     2461 tgtcagctct tcttagcttt ttttgtacat attttttttc taaacagaag aaaaaagtta
     2521 tcacaaaata ta
//
