LOCUS       XM_006244372            5618 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus perilipin 4 (Plin4), transcript
            variant X1, mRNA.
ACCESSION   XM_006244372
VERSION     XM_006244372.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244372.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244372.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5618
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5618
                     /gene="Plin4"
                     /note="perilipin 4; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 29 ESTs, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 48 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:363331"
                     /db_xref="RGD:1590867"
     CDS             174..4649
                     /gene="Plin4"
                     /codon_start=1
                     /product="perilipin-4 isoform X1"
                     /protein_id="XP_006244434.1"
                     /db_xref="GeneID:363331"
                     /db_xref="RGD:1590867"
                     /translation="MSASGDGTRGSPKSKGKTLRSFFGSLPGFSSAWNPVSHTKCSTK
                     DVQTAVDPSGTPVPPSPVATNPQMARDASGLLQLSEQTAGDKNMGSIGATSSQDAFYS
                     GVAGIMDAAKGKVQGSLSATQLALVGTKETVSGGVMGAVDMAKGLVKGGLDTSKSVLM
                     GTKDTVTTGLTGAVNMAKGTVQTGLDTSKSVLMGTKDTVTTGLTGTMNLAKGTVQTGL
                     DTSKSVLMGTKDTVTTGLTGAVNMAKGTVQTGLDTSKSVLMGTKDTVTTGLTGTMNLA
                     KGSVQTGLDTSKSVLMGTKDMVTTGLTGAVNLAKGSVQTGLDTSKSVLMGTKDTVTTG
                     LTGTMNLAKGSVQTGLDTSKSVLMGTKDTVATGLTGAVNMAKGTVQTGLDTSKSVLMG
                     TKDMVTTGLTGAVNLAKGSVQTGLDTSKSVLMGTKDTVTTGLTGAVNMAKGTVQTGLD
                     TSKSVLMGTKDTVTTGLTGTMNLAKGSVQTGLDTSKSVLMGTKDMVTTGLTGAVNLAK
                     GSVQTGLDTSKSVLMGTKDTVTTGLTGTMNLAKGSVQTGLDTSKSVLMGTKDTVATGL
                     TGAVNMAKGTVQTGLDTSKSVLMGTKDMVTTGLTGAVNLAKGSVQTGLDTSKSVLMGT
                     KDTVTTGLTGTMNLAKGSVQTGLDTSKSVLMGTKDTVATGLTGAVNMAKGTVQTGLDT
                     SKSVLMGTKDTVTTGLTGTMNLAKGTVQMGLDTSKSVLMGTKDTVTTGLTGAVNMAKG
                     TVQTGLDTSKSVLMGTKDTVTTGLTGTMNLAKGTVQTGLDTSKSVLMGTKDTVATGLT
                     GAVNMAKGTVQMGLDTSKSVLMGTKDTVTTGLTGAVNLAKGSVQTGLDTSKSVLMGTK
                     DTVATGLTGTMNLAKGTVQMGLDTSKSVLMGTKDTVTTGLTGAVNMAKGTVQMGLDTS
                     KSVLMGTKDTVTTGLTGTMNLAKGTVQMGLDTSKSVLMGTKDTVATGLTGTMNLAKGT
                     VQTGLDTSKSVLMGTKDTVATGLTGAVNMAKGTVQMGLDTSKSVLMGTKDTVATGLTG
                     AVNMAKGTVQTGLDTSKSVLMGTKDTVTTGLTGTMNLAKGTVQTGLDTSKSVLMGTKD
                     TVTTGLTGAVNVVKGVAQGGLDTSKSVLMGPKNTVCAGAPGAINVVKGAAQGGLDTSN
                     SAFPGTKSAMLAGFAGAMDMARGTAQTGLHPSKHILTGTEDMVCAGVTSIMDTAKDSQ
                     KNMDTTRDRLSTMLAHSAIRSMEECGHPAATHFATLPDELKGLGDFFQPMTAEEQAQL
                     AASESGSRVLSANRGSYYICLGDLAPSFRQRAFEHALSHIQHNQFQARAALAQLQEAF
                     QMQIPTEFGKDRDIVGCKVADSWGKSMMRASVAQDRLCALVHQLHAAYSSLATSLQGL
                     PEVQQQAGQARHSLCKLYGLVTSEAGSELQTEQLAQSSAGVVQAWQGLEVLLDKLQQN
                     PPLDWLVGPFTLMPCGQLQAPEGWVGGVPRDHAMTTDDCTSPKLWIEQDQRVLRK"
ORIGIN      
        1 cgcctgcctg ggccagccag gcccacaccc tccccagacc ctataaggcc tgggaattgg
       61 gagcccaggc gctgccagca gccgccctgc tctgagggac cccgaatggt ccaggtgagt
      121 ccaactgctg tgtcacccag cgactgccac ctccagcccc gtgggctgcc atcatgtcgg
      181 cttcaggaga tgggactaga ggttccccca aatcaaaagg caagaccctg agaagtttct
      241 tcgggtccct gcctggcttc agctctgcct ggaacccggt gtcccacact aagtgctcca
      301 caaaggatgt acaaacagca gtagacccct cagggactcc tgtccctcca tctccagtgg
      361 ctaccaaccc acagatggca agagatgcat cagggctgct ccagctttct gaacagacag
      421 ctggggacaa gaacatggga agcattggtg cgaccagcag ccaagatgcc ttctactctg
      481 gggtggctgg gatcatggat gctgcaaaag gaaaagttca gggtagcctg agtgccaccc
      541 agttggctct tgtgggcact aaggagacag tgtctggagg tgtcatggga gcagtggaca
      601 tggccaaagg tcttgtcaag ggaggcctgg acaccagcaa gagtgtactc atgggcacca
      661 aggacacggt gaccacaggg ctcactgggg ccgtgaacat ggctaaagga actgtgcaga
      721 caggcctgga caccagcaag agtgtactca tgggcaccaa ggacacggtg accacagggc
      781 tcacagggac tatgaatttg gctaaaggaa ctgtgcagac gggcctggac accagcaagt
      841 ctgtgctcat gggcaccaag gacacggtga ccacaggact cacaggggcc gtgaacatgg
      901 ctaaaggaac tgtgcagacg ggcctggaca ccagcaagtc tgtgctcatg ggcaccaagg
      961 acacggtgac cacaggactc acagggacta tgaatttggc taaaggaagt gtgcagacgg
     1021 gcctggacac cagcaagtct gtgctcatgg gcaccaagga catggtgacc acagggctca
     1081 caggggccgt gaacttggct aaaggaagtg tgcagacggg cctggacacc agcaagtctg
     1141 tgctcatggg caccaaggac acggtgacca cagggctcac agggactatg aatttggcta
     1201 aaggaagtgt gcagacgggc ctggacacca gcaagagtgt actcatgggc accaaggaca
     1261 cggtggccac agggctcaca ggggccgtga acatggctaa aggaactgtg cagaccggcc
     1321 tggacaccag caagtctgtg ctcatgggca ccaaggacat ggtgaccaca gggctcacag
     1381 gggccgtgaa cttggctaaa ggaagtgtgc agacgggcct ggacaccagc aagtctgtgc
     1441 tcatgggcac caaggacacg gtgaccacag gactcacagg ggccgtgaac atggctaaag
     1501 gaactgtgca gacgggcctg gacaccagca agtctgtgct catgggcacc aaggacacgg
     1561 tgaccacagg actcacaggg actatgaatt tggctaaagg aagtgtgcag acgggcctgg
     1621 acaccagcaa gtctgtgctc atgggcacca aggacatggt gaccacaggg ctcacagggg
     1681 ccgtgaactt ggctaaagga agtgtgcaga cgggcctgga caccagcaag tctgtgctca
     1741 tgggcaccaa ggacacggtg accacagggc tcacagggac tatgaatttg gctaaaggaa
     1801 gtgtgcagac gggcctggac accagcaaga gtgtactcat gggcaccaag gacacggtgg
     1861 ccacagggct cacaggggcc gtgaacatgg ctaaaggaac tgtgcagacc ggcctggaca
     1921 ccagcaagtc tgtgctcatg ggcaccaagg acatggtgac cacagggctc acaggggccg
     1981 tgaacttggc taaaggaagt gtgcagacgg gcctggacac cagcaagtct gtgctcatgg
     2041 gcaccaagga cacggtgacc acagggctca cagggactat gaatttggct aaaggaagtg
     2101 tgcagacggg cctggacacc agcaagtctg tgctcatggg caccaaggac acggtggcca
     2161 cagggctcac aggggccgtg aacatggcta aaggaactgt gcagacgggc ctggacacca
     2221 gcaagtctgt gctcatgggc accaaggaca cggtgaccac aggactcaca gggactatga
     2281 atttggctaa aggaactgtg cagatgggcc tggacaccag caagtctgtg ctcatgggca
     2341 ccaaggacac ggtgaccaca gggctcacag gggccgtgaa catggctaaa ggaactgtgc
     2401 agacgggcct ggacaccagc aagagtgtac tcatgggcac caaggacacg gtgaccacag
     2461 ggctcacagg gactatgaat ttggctaaag gaactgtgca gacgggcctg gacaccagca
     2521 agagtgtact catgggcacc aaggacacgg tggccacagg actcacaggg gccgtgaaca
     2581 tggctaaagg aactgtgcag atgggcctgg acaccagcaa gtctgtgctc atgggcacca
     2641 aggacacggt gaccacaggg ctcacagggg ccgtgaattt ggctaaagga agtgtgcaga
     2701 cgggcctgga caccagcaag tctgtgctca tgggcaccaa ggacacggtg gccacaggac
     2761 tcacagggac tatgaatttg gctaaaggaa ctgtgcagat gggcctggac accagcaagt
     2821 ctgtgctcat gggcaccaag gacacggtga ccacagggct cacaggggcc gtgaacatgg
     2881 ctaaaggaac tgtgcagatg ggcctggaca ccagcaagtc tgtgctcatg ggcaccaagg
     2941 acacggtgac cacaggactc acagggacta tgaatttggc taaaggaact gtgcagatgg
     3001 gcctggacac cagcaagagt gtactcatgg gcaccaagga cacggtggcc acagggctca
     3061 cagggactat gaatttggct aaaggaactg tgcagacggg cctggacacc agcaagagtg
     3121 tactcatggg caccaaggac acggtggcca caggactcac aggggccgtg aacatggcta
     3181 aaggaactgt gcagatgggc ctggacacca gcaagtctgt gctcatgggc accaaggaca
     3241 cggtggccac agggctcact ggggctgtga acatggctaa aggaactgtg cagacgggcc
     3301 tggacaccag caagagtgtc ctcatgggca ccaaggacac ggtgaccaca gggctcacag
     3361 ggactatgaa tttggctaaa ggaactgtgc agacgggcct ggacaccagc aagtctgtgc
     3421 tcatgggcac caaggacacg gtgaccacag ggctcactgg ggctgtgaat gtggttaagg
     3481 gggttgccca gggaggcctg gacaccagca aatctgttct gatgggccca aagaacactg
     3541 tttgtgctgg agccccagga gccattaatg tggtcaaagg ggctgcccaa ggaggcctgg
     3601 atacttcaaa ttctgcattc ccaggcacaa agtctgcaat gttagctggc ttcgcaggcg
     3661 caatggacat ggccaggggt acggcgcaga caggcctgca ccccagcaag catatactta
     3721 caggcacgga ggacatggtc tgtgctgggg ttaccagcat catggacacg gctaaagata
     3781 gtcagaagaa catggacacc accagagaca gactgtccac catgctggct cattcagcta
     3841 tcaggtctat ggaagagtgt ggtcatcctg ctgccacaca ctttgctaca cttcctgatg
     3901 agttgaaagg cctgggtgat ttcttccagc ccatgacagc tgaggaacaa gctcagctgg
     3961 cagcctcaga gtcagggtcc cgagtactct ctgccaaccg gggaagctac tacatctgcc
     4021 tgggtgatct ggccccgagc ttccgccagc gggcttttga acatgccctg agccacatac
     4081 agcacaacca attccaagcc agggccgcac tggcccagct ccaggaggcc ttccagatgc
     4141 agatacccac ggaatttgga aaagacagag acattgtggg atgcaaggtg gcagattcct
     4201 ggggaaagag catgatgcgg gcttccgtgg ctcaggacag gttgtgcgcc cttgtccatc
     4261 agctccacgc agcttacagc agcctggcaa ccagcctgca gggcctgcca gaggtgcagc
     4321 aacaggcagg gcaggcacgg cacagcctct gcaagttgta tggccttgtg acttcggagg
     4381 caggcagtga gctgcagaca gaacagctgg cccagagcag tgctggtgtt gtgcaggcct
     4441 ggcagggcct ggaggtattg ctagataagc tgcagcaaaa ccctccactt gactggctgg
     4501 ttggaccctt taccttgatg ccttgtggcc agctgcaggc acctgagggc tgggtgggtg
     4561 gggtgcctag ggaccatgct atgaccacag atgactgtac ttccccaaag ctctggattg
     4621 agcaggacca gagggtcctc agaaagtgaa tttgaaacta gtcatggctc ctgctgtttc
     4681 caagaagcca tggtccctct tccaaactag ccaccaagtc tgttcagata caggccacac
     4741 agacccccca cactggcaga gtgaagaagc accacccatc cccactgcca tccttggtgc
     4801 tctgagcctc tctccagggc ctatagctcc ccctatgggt agtgccactc cagcccaggc
     4861 cccactctgg gcagcacaac cacagatctt agctaatagc taggcactag acttagctaa
     4921 atgctagggc acaaggcact gcctcactgc caggtcaagg ccacagcaca gccttccctg
     4981 aaccccagca gtgctagtga ccccaacctt ccagttcctt tatctgcact cttcgaaaat
     5041 aacaatgtcc acaagcttca gggcagggcc agctgtggcc aaggaatgcc atgacagaga
     5101 cggcaaggag cctttccctg tcctgctgtc agcatcgggg tgacactata ctcggtcact
     5161 ggcaaacact gggctcagag cctacagctg agcctcatca catcatgcct ggttatcggt
     5221 ggctattgat gcaggtggat acactggaag gcatgtaccc aactcctgag cccactggga
     5281 acacagaaga gcggggaagc ccctgctcaa aaccacacag tgaaggaggc tgggatggtg
     5341 ctgactgcaa cactccagac cagaggctgg gctgcaccag aggcactatg ctggtgccac
     5401 ttgggggtcc ctacacggct ggtgacctct cctgttgggt ggtccttagt gtctgcttca
     5461 ctcatgctgg tagaacaggc tacttaccgt aggaagcgct ctcccatgag gtggccagca
     5521 cctaagccct atgtcaggca cagtgccctg gccctagcct tgtgtatttc acatcaggac
     5581 accgagccaa taaaagctgt ttctttttca ttacaaaa
//
