LOCUS       NM_001108072             877 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus pleckstrin homology domain containing J1
            (Plekhj1), transcript variant 1, mRNA.
ACCESSION   NM_001108072 XM_001071331 XM_234909
VERSION     NM_001108072.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 877)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jan 31, 2022 this sequence version replaced NM_001108072.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ230285.1, BC168179.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-190               JAXUCZ010000007.1  9566648-9566837
            191-258             JAXUCZ010000007.1  9566940-9567007
            259-325             JAXUCZ010000007.1  9567078-9567144
            326-416             JAXUCZ010000007.1  9568139-9568229
            417-480             JAXUCZ010000007.1  9568307-9568370
            481-877             JAXUCZ010000007.1  9568438-9568834
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q11"
     gene            1..877
                     /gene="Plekhj1"
                     /note="pleckstrin homology domain containing J1"
                     /db_xref="GeneID:314634"
                     /db_xref="RGD:1307213"
     exon            1..190
                     /gene="Plekhj1"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..585
                     /gene="Plekhj1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     pleckstrin homology domain containing, family J member 1"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family J
                     member 1 isoform 1"
                     /protein_id="NP_001101542.1"
                     /db_xref="GeneID:314634"
                     /db_xref="RGD:1307213"
                     /translation="MRYNEKELQALSRQPAEMAAELGMRGPKKGSVAKRRLVKLVVNF
                     LFYFRPDEAEPLGALLLERCRVAQEEPGGFSISFVEDLSRKYHFECCSQEQCQEWMEA
                     LQRASYEYMRRSLIFYRNEIRKMTGKDPLEQFGISEEARFQLSSLPKDASCIGSQLHV
                     LD"
     exon            191..258
                     /gene="Plekhj1"
                     /inference="alignment:Splign:2.1.0"
     exon            259..325
                     /gene="Plekhj1"
                     /inference="alignment:Splign:2.1.0"
     exon            326..416
                     /gene="Plekhj1"
                     /inference="alignment:Splign:2.1.0"
     exon            417..480
                     /gene="Plekhj1"
                     /inference="alignment:Splign:2.1.0"
     exon            481..877
                     /gene="Plekhj1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttcctgag acttttgtgg cgctagtagc ggcttcgggc aggacggcgg ccgagaggca
       61 gggcgcgttt tggttcgcgc ggatccgggc ggcgagatgc ggtacaacga gaaagagttg
      121 caagcgctgt cccggcagcc ggcagagatg gcggccgagc tgggcatgcg gggccccaag
      181 aagggcagcg tggccaagag gcggctggtg aagctggtgg tcaacttcct cttttacttc
      241 cgcccggacg aggccgagcc cctcggagcc ctgttgctgg agcgctgcag agtggcccag
      301 gaagagccgg gaggcttctc catcagcttc gtggaagacc tcagcaggaa atatcacttt
      361 gaatgctgta gccaagagca gtgccaggaa tggatggagg ctctgcagcg ggccagctac
      421 gaatacatga gacggagcct catcttctac aggaatgaga tcaggaagat gaccggcaag
      481 gacccgctgg agcagttcgg catctccgag gaggccaggt tccagctgag tagcctgcct
      541 aaggatgctt cttgcattgg ctcccagcta catgtgttgg actgaccccc tctgggcccc
      601 cggctaccct gggaagtttt gttttttaaa taggtttaaa tacatctgtt caaaggtcca
      661 gaggaggtag gcagggtctg tggtccttgc tctccctgcc atctccctgc tggcaccctt
      721 tgactgtgca catccaggga cagcgcccct gtccatggcc agatgaatgt ataatgctaa
      781 agctgtgaac cccactcctg ctgatagagc aggcgttggt gctggccttc agtgctgagc
      841 ccactcttta ataaaggtac ctcttttgtg aatcaca
//
