LOCUS       NM_001395591            6484 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus pleckstrin homology, MyTH4 and FERM domain
            containing H1 (Plekhh1), mRNA.
ACCESSION   NM_001395591 XM_039112289
VERSION     NM_001395591.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jul 21, 2021 this sequence version replaced XM_039112289.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.25810.1,
                                           SRR26643297.23094.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-251               JAXUCZ010000006.1  103572304-103572554
            252-412             JAXUCZ010000006.1  103582855-103583015
            413-475             JAXUCZ010000006.1  103590987-103591049
            476-625             JAXUCZ010000006.1  103591998-103592147
            626-709             JAXUCZ010000006.1  103595278-103595361
            710-791             JAXUCZ010000006.1  103597479-103597560
            792-1543            JAXUCZ010000006.1  103597656-103598407
            1544-1622           JAXUCZ010000006.1  103601652-103601730
            1623-1714           JAXUCZ010000006.1  103602272-103602363
            1715-1865           JAXUCZ010000006.1  103604006-103604156
            1866-1993           JAXUCZ010000006.1  103604338-103604465
            1994-2104           JAXUCZ010000006.1  103606147-103606257
            2105-2191           JAXUCZ010000006.1  103607177-103607263
            2192-2353           JAXUCZ010000006.1  103607563-103607724
            2354-2434           JAXUCZ010000006.1  103608419-103608499
            2435-2617           JAXUCZ010000006.1  103608807-103608989
            2618-2726           JAXUCZ010000006.1  103609356-103609464
            2727-2839           JAXUCZ010000006.1  103610250-103610362
            2840-3016           JAXUCZ010000006.1  103611028-103611204
            3017-3114           JAXUCZ010000006.1  103611531-103611628
            3115-3292           JAXUCZ010000006.1  103613121-103613298
            3293-3448           JAXUCZ010000006.1  103613767-103613922
            3449-3549           JAXUCZ010000006.1  103614848-103614948
            3550-3691           JAXUCZ010000006.1  103615578-103615719
            3692-3834           JAXUCZ010000006.1  103616546-103616688
            3835-3964           JAXUCZ010000006.1  103616770-103616899
            3965-4054           JAXUCZ010000006.1  103618656-103618745
            4055-4201           JAXUCZ010000006.1  103618988-103619134
            4202-6484           JAXUCZ010000006.1  103619447-103621729
FEATURES             Location/Qualifiers
     source          1..6484
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..6484
                     /gene="Plekhh1"
                     /note="pleckstrin homology, MyTH4 and FERM domain
                     containing H1"
                     /db_xref="GeneID:314262"
                     /db_xref="RGD:1308362"
     exon            1..251
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            252..412
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     CDS             290..4357
                     /gene="Plekhh1"
                     /note="pleckstrin homology domain containing, family H
                     (with MyTH4 domain) member 1"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family H
                     member 1"
                     /protein_id="NP_001382520.1"
                     /db_xref="GeneID:314262"
                     /db_xref="RGD:1308362"
                     /translation="MAEVKVEVVGIDWQKRCLSLETQLFRFRLQASKIRELLADKMQE
                     LEQRLLEAEQRAENAETQVGVMEEKIKLSNLKSVDSTGSLHQKYQELLKAMQGKDELI
                     GQLQAQLEKQKQTRAEEAKIVQEKAAKIKEWVTVKLAELEMENQHLKTCNQQLVEQVA
                     ALQDALEDLRMTPSEELLGVPEGTPEGDPVPSGPSAQPVEQDSNPNTQISKVAVPTPL
                     GTLQSKDFLSEARSPEDLSFSMAHPGDIAEAKTLQSHLQREGSPSQPFMKPGSPRCGS
                     ASYREGLITAQGGTFPGTKISAREGGPGSSLTLPKVRAPSIPRDSFQVAKRHHSQPQV
                     GPGHVDHVVSIEIGALSALHSSGLPKSEARAKVREEAEKMEMEELPPMGKKGERESLK
                     PRRGELEGVEPENKPPTPPLHRFPSWERRIYAMATSGMQLSDVSSRNTASCFASGPPA
                     LAFPGAFSGLIYKNVTVPVYTALKGKATQISNVPFVDESSGSDDDCGSQASFRMSVPC
                     SEYRKTSGLGSPRAIKRGVSMSSLSSEGDYAIPPDACSLDSDYSEPEHKLQRTSAYST
                     DGETLEKSGYLLKMGSRVKTWKRRWFVLRQGQILYYKSPNDVIRKPQGQVDLNSHCQI
                     VRGEEAQTFQLISGNKIYYLTAESPSLLEEWIRVLQSLLKVQVTGPPALHQGGTKPTV
                     KGWLTKVKHGHSKLVWCALVGKTFYYYRSHEDKRPLGCLPVRDAHIEEVDRSCDSDED
                     YEAGGTGRLLSSHCTLVIHPPEHSPTYLLIGTKHEKDTWLYHLTVAAGGSSAKVGTVY
                     EQLIGKLMDGEGNPDSPLWRHPMLCYSQEGLCASLTTLPSEALQTEALKLFKSCQLFI
                     NVPVEAASVDYHVSLAQTALQVCLVHPELQSEIYCQLMKQISRRPPQKYSLMQCWQLL
                     ALCAPLFLPQHHFLWYVKQQLQRHADPRSETGQYAIYCQRAVERTLQTGEREARPSRM
                     EVVSILLRNPFHHSLPFSIPVHFANGTYQVVGFDGSSTVDEFLQRLNQETGMRKPSQS
                     GFALFTDDPSGRDLEHCLQGRVKICDAISKWEQTLKELHPGKSEGGTRVVKLMYKNRL
                     YFRSQVKGETERERLLLAFQTSGEIVAGRFPVTKELALEMAALMAQVEYGDLEKPTLP
                     GPGGTPPAKAQHLLQQVLDRFYPRHYRNGAPPEQLRHLADMMATKWAALQGCSPPECI
                     RIYLTVARKWPLFGAKLFAAQPAQPLSSKENTPVWIAVNEDGVSILDQRTMQVNITYP
                     YSSVTTFGGCRDDFMLVIRSIPDQNSGKTRIDKLTFRMPAPKITDTTLVMASYMNHCS
                     ATVNLSAKLPAARQPRDLDGQFFASVSCTKGSALL"
     exon            413..475
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            476..625
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            626..709
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            710..791
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            792..1543
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            1544..1622
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            1623..1714
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            1715..1865
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            1866..1993
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            1994..2104
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            2105..2191
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            2192..2353
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            2354..2434
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            2435..2617
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            2618..2726
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            2727..2839
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            2840..3016
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            3017..3114
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            3115..3292
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            3293..3448
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            3449..3549
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            3550..3691
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            3692..3834
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            3835..3964
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            3965..4054
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            4055..4201
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
     exon            4202..6484
                     /gene="Plekhh1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctggccgcg agctgcccgc cgagcgcggt gcggacacag cgggcgcggc gctgcaccct
       61 gcgccggggc gggctttgtg cggagctccg gggaacttcc aggctccggc ctcggcccgc
      121 cacgcccacc gcgacccctg ctgcggagga gcggagaccc ggcggcctcc cggcactcgg
      181 ggagagccac tgcggggcag aggcgcgcgt ggcggccggg gtcgcggcgg gactcccggc
      241 agctcactca gtgtgctgga tcttggaact cctgggagta tttggaatca tggcagaagt
      301 caaggtggag gtggttggca tagactggca gaagcgctgc ctttccctgg agacacagct
      361 tttccgcttc cgcctgcagg ccagcaagat aagggagctg ctggctgaca agatgcagga
      421 gctggagcag aggctgctgg aggctgagca gagagctgaa aatgcagaaa ctcaggtggg
      481 tgtgatggaa gaaaagataa agctgtccaa cctgaagagt gtggactcca caggcagctt
      541 gcaccaaaag taccaagaat tgctgaaagc catgcaaggc aaagatgagc tcatcggcca
      601 gctgcaggca cagctggaga agcagaagca gacaagagct gaagaagcca aaattgttca
      661 agaaaaagct gcaaagatca aggaatgggt gacagtaaag ttagcagagc ttgaaatgga
      721 gaatcaacac ctgaagacct gtaatcagca gctagtggag caggtggcag cccttcagga
      781 tgctcttgag gatcttcgta tgacaccttc agaggagctg ctaggtgttc cagaggggac
      841 cccagagggg gatcctgtcc cttcagggcc cagtgcccag cctgtggagc aggacagtaa
      901 tcccaatacc caaatttcga aggtggctgt gcctacgcct ctgggcaccc tgcagagcaa
      961 ggactttctg tcagaagcca gaagtcccga ggatttgagt ttcagcatgg cccatcctgg
     1021 agacattgca gaggccaaga cccttcaatc tcatcttcag agagagggct ctcccagtca
     1081 gccgttcatg aagcctggca gccccagatg tgggtcagcc tcttacaggg agggtctgat
     1141 cactgctcag ggagggacat tccctgggac caagatctct gccagggaag gtggcccggg
     1201 tagtagcctg accctgccaa aggtgcgggc tcccagcatc ccccgggaca gctttcaagt
     1261 ggccaaaagg caccacagtc agccccaggt gggccctggg catgttgacc atgtggtaag
     1321 cattgagatt ggggccctgt cagccctcca ctcatctggc ctccccaagt ctgaagccag
     1381 agctaaagtc cgggaagaag ccgagaagat ggagatggag gaactgcctc caatgggcaa
     1441 gaagggagaa agagagagcc tgaagccccg cagaggtgaa ctggagggag tggaaccgga
     1501 gaacaagccg ccgacgcccc cactgcaccg gtttccatcc tgggagcgca ggatctatgc
     1561 gatggccaca tcaggcatgc agctgtcaga tgtgtcgtcc cgaaatactg cttcctgttt
     1621 cgcatcagga ccgcctgccc ttgcattccc tggagctttc tctggcctta tttataagaa
     1681 tgtcactgtg cctgtctaca cagcactgaa ggggaaagcc acacagatca gcaacgtgcc
     1741 ttttgtggat gagtcctctg ggtccgatga tgactgcggc tctcaagcga gtttccggat
     1801 gtcagtccct tgctctgagt ataggaagac cagtggacta ggcagccccc gggccatcaa
     1861 gagaggggtc tccatgtcct cactgagctc cgagggggac tatgccatcc ctcctgatgc
     1921 ctgctccctg gacagtgact actcagaacc tgagcacaaa ctccagcgca cttcagcgta
     1981 ctccactgac ggggagacac tggaaaagtc aggctacctg ctgaaaatgg ggagccgggt
     2041 gaagacctgg aagaggcgct ggtttgtcct gagacaggga caaattctat actacaagtc
     2101 tccgaatgac gtcattcgga aacctcaagg tcaagtggat ctgaactctc attgccagat
     2161 tgtccgaggg gaagaagcac agacatttca gctcatctct ggaaacaaaa tctactacct
     2221 aacagcagag tcccccagcc tcctggaaga atggatccgg gtcctacaga gcctgctgaa
     2281 ggtgcaggtc actggccctc cagccctgca tcaagggggc accaagccta ctgtgaaggg
     2341 ctggctgacg aaggtaaagc atggccactc caagctggtc tggtgtgccc ttgttgggaa
     2401 aaccttctac tactaccgga gccacgagga caagagaccc ctgggctgcc tacctgttcg
     2461 ggacgctcat atagaggaag tagatcgatc ctgcgactca gacgaagact atgaggctgg
     2521 aggaactgga cgcttgctgt cctctcactg cacactggtg atccacccac cagagcacag
     2581 ccccacctac ctcctcatag gcaccaagca tgaaaaggac acatggcttt accacctcac
     2641 agtggctgca ggtggcagca gtgccaaggt gggcactgtc tatgagcagc tcattgggaa
     2701 actgatggac ggtgagggca acccagactc cccgctctgg aggcacccca tgctgtgcta
     2761 cagtcaagaa gggctgtgtg cttccctcac cacgctgccc tccgaggctc tacagacgga
     2821 ggccctcaag ctcttcaagt cctgccagct cttcatcaat gtgccagtgg aagccgcctc
     2881 ggtggactac cacgtgtcgc tggctcagac agcactgcag gtctgcctcg ttcaccccga
     2941 gctacagagt gagatctact gccagctcat gaagcagatc agtcgccgcc cacctcagaa
     3001 gtactctctc atgcagtgct ggcagctcct ggctctgtgt gccccactct tcctgcctca
     3061 gcaccacttc ctctggtatg tcaaacagca gcttcaacgc catgcagatc ccagaagtga
     3121 aactggtcag tatgccatat actgccagcg agccgtggag cgaaccctgc agacaggaga
     3181 acgggaggcc agaccatcgc ggatggaagt ggtgtccatc ttgcttcgga accccttcca
     3241 tcactccttg cccttcagca tccctgtgca ctttgccaat gggacttacc aggtggttgg
     3301 ttttgatggc tcctccacag ttgatgagtt cctccagcgg ctgaaccagg agacaggcat
     3361 gagaaagcca tcccagtctg gctttgccct cttcacagat gatccttcgg gcagggacct
     3421 ggagcactgt ctccaagggc gtgtcaagat ctgcgatgcc atctccaagt gggagcaaac
     3481 gctgaaggag ctgcatcccg gaaagtctga gggtgggaca cgagttgtga agctgatgta
     3541 caagaacagg ctatactttc gaagtcaagt aaaaggggag acagagagag agcggctgct
     3601 acttgccttc caaaccagtg gcgaaatagt ggcaggaaga tttccagtca ccaaggaact
     3661 ggccctcgaa atggctgcct tgatggcaca ggtggagtat ggggacttgg agaaacctac
     3721 gctgccaggc cctgggggta cacctccggc caaagcccag catctcctcc agcaggtcct
     3781 tgacaggttt tacccaaggc actatcgaaa tggagcaccc cctgagcagc tgaggcactt
     3841 ggcagacatg atggccacca agtgggcagc attacaaggc tgctcccctc ctgagtgcat
     3901 ccgcatctac ctgactgtgg ctcggaaatg gcctctcttt ggtgctaagc tctttgctgc
     3961 tcagcctgcc cagccgttgt cttctaagga gaacactccg gtgtggattg ctgtgaatga
     4021 ggatggtgtt agtatcctgg accaacgcac tatgcaggtg aacatcactt atccctactc
     4081 ttcagtgaca acgttcggtg gctgcaggga cgacttcatg cttgtgatta gatccattcc
     4141 agaccagaac tctggaaaaa cccgtattga caagttgacc ttccgaatgc ctgctcccaa
     4201 gattacagac actaccttag tgatggccag ctacatgaac cactgttctg caactgtgaa
     4261 cctatcagcc aagctccctg cagcccgcca gcccagagac ctggatggac agttttttgc
     4321 ttctgtttcc tgcactaagg ggtcagcttt gctgtgaacg tttctccttc ccataccctt
     4381 aaaccacccc tggtgcctct gggattagat tatatcctgg agcatactac tgtgatgggt
     4441 ctaatggccc ctcctcaaac tgttctgtga aatgtatatt tcagggtctc ttgaaacctt
     4501 tgtgaccgtt aggtgcctta tctttcaagg cctaatgttt taagattcag acccaacatc
     4561 aaaaccacta tttctttaac aagaatactg actccggatg ctacctgatt ctagattaag
     4621 acagggatgg cccgcagtta ccagggcaat ggtactgtat ttggggcttc tgcactgata
     4681 ctcagggaag ctcatctttt tatattgtac atggtcttta cgtggggact tatacttgaa
     4741 gttttctgaa catccctgaa taaaatagga ctaaagttcc taattcacct aaactctggc
     4801 aaaagcctac aaatctctaa aattgaattt ctttcccaaa tgggaaaaac actggggcag
     4861 cagctctaat attttcagga cagcacagtg ttctgttaag agtaaagccc tctcggggct
     4921 ggggatttag ctcagtggta gagcgcttgc ctaggaagcg caaggccctg ggttcggtcc
     4981 ccagctccgg aaaaaaaaaa aaagagtaaa gccctctctc tcacactgga ctagcacagg
     5041 tagggacaga gccacaccct tcctgtgtca ttttaaggct ctgcaaagct cggtgacggc
     5101 tgtgctcact cctgaaggac aaggtggtca tcgtctccct gcactcttaa agaccacaca
     5161 catgaatttt gcttgttgct gctctcagag gccaccagaa caaggtgtca ggaacaataa
     5221 agacccttcc attattggaa ggcctggatt gctcaccaag acttttggta gatggcttct
     5281 tgaaatcatt tggaagcaca gggcatgtat atgatatctg ccctagtaac atgtggaaac
     5341 agaagtttct tccaactttg ccttcctgag aatattctaa cccctctcaa ctcaaatcta
     5401 gctgattttg atgaagatga tctttatttt acctccccac aaaataaaaa aaaagttcat
     5461 actttggttt tccaacatat aaaaaaataa gctttattgt atagctttca gacagtttat
     5521 catttttcag taacatggac tagggaatag gaagaatatc aagaaataag cctttaacct
     5581 aacaatgtgt gtgttgtaca ccacaagaaa ctgcaaggcc aaaaattagt ttgtccgaat
     5641 gcctcagctg ctgtagtctt tcatcctttg aactgacaag cctgacttta aaagggcaca
     5701 agagtctgcc tcttaaagga gcgtggctcg aaagccaggc agctttataa ccgtttctgt
     5761 ttgcacccca actcccaccc cagaatttgg ggttgtagtg gagacaggtc tacctcaagt
     5821 cacatcacta taggctcctg gacagctcct tcaaggctgg ctgaaaggca gagaattcag
     5881 ttctaggttt acatccaagg gccttgaagc cagtaaggat gcagtctgct cttaggttgt
     5941 ttgtgctttg taaacagaac tccagctaat gcaactattt gtactagact tgaaggtcag
     6001 agacttgaag gtcagatctg ttgctgctcc cctccccacc cccctagtcc ccccttctct
     6061 cttgctctct ttgagacagg gtttcactgt gcagccttag ctgtcctgga actccctatg
     6121 tagaccaggc tagcctaaaa ctcagagatc tacctgcctc tgcctctgcc tctgcctccc
     6181 aagtgctgag attaatggca aatgccgcct aatccagctc cttttctcct tcctgatctt
     6241 tagaatctaa ggaaccacct ttgaaacaaa ggcttctgta aactggcttc ttcatccttt
     6301 aatgtgacag tctcaagtct gggaaccaac atgtaatctc tcatttttca tctaagccct
     6361 cttagccaag cagcttttga gcaatagaaa atattaagta acagaaaggt actaatatgc
     6421 ttgacaccca tggctgaaat gctgtgtatt atgtctgtca ataaaaagct gtcagtgaac
     6481 caga
//
