LOCUS       XM_039080593            1509 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus pleckstrin homology and RhoGEF domain
            containing G7 (Plekhg7), mRNA.
ACCESSION   XM_039080593
VERSION     XM_039080593.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 39% of CDS bases
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 5 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-197               JAXUCZ010000007.1  32692463-32692659   c
            198-231             JAXUCZ010000007.1  32674062-32674095   c
            232-572             JAXUCZ010000007.1  32670069-32670409   c
            573-675             JAXUCZ010000007.1  32669345-32669447   c
            676-738             JAXUCZ010000007.1  32662623-32662685   c
            739-811             JAXUCZ010000007.1  32662549-32662621   c
            812-894             JAXUCZ010000007.1  32662088-32662170   c
            895-980             JAXUCZ010000007.1  32637351-32637436   c
            981-1029            JAXUCZ010000007.1  32633187-32633235   c
            1030-1146           JAXUCZ010000007.1  32632385-32632501   c
            1147-1248           JAXUCZ010000007.1  32621281-32621382   c
            1249-1328           JAXUCZ010000007.1  32621200-32621279   c
            1329-1509           JAXUCZ010000007.1  32614744-32614924   c
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1509
                     /gene="Plekhg7"
                     /note="pleckstrin homology and RhoGEF domain containing
                     G7; The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 Proteins"
                     /db_xref="GeneID:102549681"
                     /db_xref="RGD:7576392"
     CDS             1..1509
                     /gene="Plekhg7"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 2 codons;
                     substituted 5 bases at 5 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:382..384,aa:OTHER)
                     /transl_except=(pos:466..468,aa:OTHER)
                     /transl_except=(pos:781..783,aa:OTHER)
                     /transl_except=(pos:1114..1116,aa:OTHER)
                     /transl_except=(pos:1225..1227,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: pleckstrin homology
                     domain-containing family G member 7"
                     /protein_id="XP_038936521.1"
                     /db_xref="GeneID:102549681"
                     /db_xref="RGD:7576392"
                     /translation="MEIRHGLSLREEWCQRSEVRKTLVHSRISKEEQKSEMSAVAHTP
                     EHGDGPLGGDFTSSCEALRADRQCHVQRQAIPKSQKNLLKFDRQAPSHISTFPTLRRL
                     RGSGWEVSHSLLQQEYSLKMPVRGSXRYPAGSSCHPKSLPGSPKDSSHVLSPLXPQTR
                     LPSNPEGAINATNTIWPQAKPSEEDALAAHWSKRGATLSKAKPNQNNRSTFVAAKVFT
                     FGIPFKKSTGSVSTGRVQNLVLNGLEVFPGDLLESDRPTDHLXHQLLLLLTPASQQCL
                     PTRVASCGSRSDGDRRVVDAMMIFRNTLKYLRTHVYLLDVCFWMLLANLKDYRPQNNS
                     DRQISYRSKSFQEILCQSHQISCLTYNAAVFYLEILEXREDISIYLRTWCELNEQCRW
                     LPLLEMLRVAVLHRLTXYPMNSIWKRSTPSTEKIIIYSIKEMVEKSIFKSLGLDTGLM
                     CPSLTPDLQATIINSTTLDQTIPPDKLIVRSTDPLHMLGMCELTPSSSGICH"
ORIGIN      
        1 atggagatca gacatggact ctcactgagg gaggagtggt gtcaaagatc ggaggtgagg
       61 aagaccctgg tgcattcgag gatatcaaag gaagagcaga aatcagagat gagtgcagta
      121 gctcatacgc ctgaacacgg agatggccct ttaggtgggg attttacttc atcctgcgag
      181 gcgctgagag ccgatagaca atgtcatgtt cagaggcagg ccatcccaaa gagccagaag
      241 aaccttctca agtttgaccg gcaagcccct agccacattt ccacctttcc tactctgaga
      301 agattaagag gcagtgggtg ggaggtctca cactcattac ttcagcaaga atactccttg
      361 aaaatgcccg taagaggaag ctgaaggtat cctgcaggct caagttgcca tcccaagagt
      421 ctacctggaa gtccaaagga ttcttctcat gtactgtcac ctttgtgacc tcaaacaagg
      481 ttgccttcaa accccgaagg ggccatcaat gcaactaaca caatatggcc acaagcaaaa
      541 cccagtgaag aggatgccct tgctgcccat tggagcaaac ggggtgctac actttcaaaa
      601 gccaaaccaa accaaaacaa tcgctctaca tttgtggctg cgaaagtctt cactttcgga
      661 atacccttta agaagagcac aggttctgtg agtacaggca gagtacaaaa tctggtatta
      721 aatggacttg aggtgttccc tggggacctt ctagagtctg ataggcctac tgatcatctg
      781 tgacaccaac tgctactgct gctgactcca gcatcccaac agtgtcttcc aaccagagtg
      841 gcatcttgtg gaagtagaag tgatggtgac agacgtgtcg tagatgcaat gatgatcttc
      901 aggaatacac tgaaatacct gagaactcat gtctatctat tggatgtgtg tttttggatg
      961 ctcttggcaa atctgaagga ctacaggcct cagaacaatt cagacaggca gatcagctac
     1021 agaagcaaat ctttccagga gatcctctgt cagagccacc agatctcctg cctgacctac
     1081 aatgctgctg tgttttatct ggagattctg gagtaaagag aagacatcag tatttaccta
     1141 agaacatggt gtgaactgaa tgagcaatgc aggtggcttc ctctgcttga gatgctgcga
     1201 gtggctgtac tgcacaggct aacctgatac cccatgaaca gtatctggaa aaggagtaca
     1261 ccctccactg agaagattat aatctactcc attaaggaaa tggtggagaa gtcaatcttt
     1321 aagtccctag gcttggacac cggtttaatg tgcccttcac taactcctga cctgcaagct
     1381 actataataa attccacaac gcttgatcag accatcccac cagacaaact gatagtcaga
     1441 agcactgatc ccctccacat gttaggtatg tgtgaactca caccatccag cagtggcatt
     1501 tgccactaa
//
