LOCUS       XM_002729428            4065 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pleckstrin homology and RhoGEF domain
            containing G6 (Plekhg6), transcript variant X1, mRNA.
ACCESSION   XM_002729428
VERSION     XM_002729428.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 2, 2024 this sequence was replaced by
            NM_001427743.1.
            
            On Jan 21, 2021 this sequence version replaced XM_002729428.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4065
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4065
                     /gene="Plekhg6"
                     /note="pleckstrin homology and RhoGEF domain containing
                     G6; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     6 samples with support for all annotated introns"
                     /db_xref="GeneID:100362241"
                     /db_xref="RGD:2318544"
     CDS             1188..3539
                     /gene="Plekhg6"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family G
                     member 6 isoform X1"
                     /protein_id="XP_002729474.2"
                     /db_xref="GeneID:100362241"
                     /db_xref="RGD:2318544"
                     /translation="MQTFDPPNEGPLQGLVASRIETYGGRHQTSAQSSAGITYPRGGP
                     ALDLSRRRLQHYVPFAKGSGQTRGLSPQEPDPEKRHGNYFGVGSPYFPKFKEVSKAHE
                     LEVRLHTFSMFGMPRLPPEDRRHWEIGEGGDSALTIEKSWKELVLGHKEMNRELCHQQ
                     EALWELLTTELIYLRKLKIMTDLLAAGLLNLQRVGLLTEVSAETLFGNVPKLIRTHRR
                     FWEEVLQPILEDTRTSGQPLDPVSLQNGFLTFGQRFQPYIQYCLRVKQTMAYAREQQD
                     TNPLFRTFVQWCEKHKRSGRQTLGDLLIKPHQRITKYPLLLQAVLKRSPEPRAQLALD
                     NMIVAVESFLQHINGLVRRGEEQESLMAVAQRIGPYEVLEPSSEEVEKHLRQFSTLDL
                     MTPIEGVAPENTRQLLLEGPVRMKEGREGKMDVYLFLFSDVLLVTKPQRKVDKAKVIR
                     PPLMLEKLVCRPLRDPHSFLLIHLTEFQCVSSALTVHCSSSTERTQWLQKTQQAQATL
                     QKLKAEEYVQQKRGLLALYRDQGRESPSPRPSTPSPEDSQSSAEGRALEFTVIPRLVV
                     TEDTDEDTPSVTDDTSDSGYGTLIPSSPKDSQSPLNRLRSKALRRDPRLTFSTLELRD
                     VPLRPQPPDPQALQRRSAPEMPEGILRGGSLPRRAPPTWSEEEDETLTPGNVVVETLS
                     RAQRRSPLPHSPAHTDSAGESPWESTDEDEGPLSPGLRPRSLRAEDMLREIREELASQ
                     RIEGALEPEPGNGKLRRLTRAQLQRMRGHHVIQLDTPMSTSDV"
ORIGIN      
        1 agaaactgtt cagtttgtag cctttaggaa agccacgctg gcccaagggc agtacggtgg
       61 gaaggtgccc tcacctggta tcaccctcct tccaggctta ggtaatggga ggactgttgg
      121 gtatgggcta agcctggccc cagacccctc cctgaatcaa acgcaaagtc cacagaacct
      181 tccgccctgt tgccagggaa ggccagcaag tccactggag ataagggcta cactttggac
      241 tctactccat ggccagagga cggccatagt gacgaggatc cctgggccta cgcccttcct
      301 gatgctaggc tggctccctt tcagggtaac ggtctaggac aggcaagagg ggaaagggtg
      361 caacgcaggg aaggttacct gccacaagtc acttggtcat tacctcaccg cctccgcgta
      421 gcggcgccca acctctcatt tacccctcat taccctggcg cctggcaggg gtctggccgg
      481 gaagggaaga cgcgctggtg gcctgcgggt ggcactggtt ccagcccctg accccgacca
      541 ggtgacagat tgctgactag ttcaggtgca aaagaaaggg agaaggcaca caccgcgaag
      601 tgagcactcc tggtctgggg ttggtgtacc ggagtccggc tccgtccggg tgaccgggac
      661 cgcgacgctg cacggctccc agggaggggg aggtgccagc ccgcgtcccg cccctctgcc
      721 gccaccttca cctcccctcc cggccccgtg ctgcctggtc ccgcgggccg ctcggtccta
      781 gtccccaggc tgggacagtg ggactgccat cgccaaagaa gctgacaacg acccggattc
      841 ccaccggatc cagcgggcat caaggacagc ggaagcccgg acacctgcgc tcacaggccc
      901 tgcctactgc aagggatggg tcttccatcc aggtctggaa aagaggggtg gagtccggca
      961 tctgacttgc agctccatgg tggtgtcctc agaggctggg aaagaccgaa cttagtggga
     1021 gtgcagcggg ttgcctcaac taggctcgtc tctacagacc ctgtctgaca gttctcccga
     1081 cttcgccaga ttgtgcgtgg acgtgggggt ccagaaaagg ggacccccac ccctttctcc
     1141 tggacattgg agatatgatc ctctgggggt aactcaggaa agaaacaatg caaacctttg
     1201 atcctccaaa tgagggcccc ctccaaggcc tggttgcttc ccgaattgag acttatgggg
     1261 gccgtcacca gacctctgcc cagagttctg ctgggattac atatcccaga ggaggtcctg
     1321 cattggacct tagtcgccga cgcctacagc actatgtccc ctttgccaag ggttccggcc
     1381 agacccgagg cctgtctcct caggaaccag acccagagaa gagacatgga aactattttg
     1441 gggttggctc accttacttc cccaaattca aggaagtctc caaggcccat gagctagaag
     1501 tgagactgca tacattcagc atgtttggga tgccccgcct gccaccggag gatcgacgac
     1561 actgggagat aggagagggg ggtgacagtg ccctgaccat tgaaaagtcc tggaaggagc
     1621 tggtgctagg acacaaggag atgaatcgcg agctttgcca ccagcaggaa gcactgtggg
     1681 agctcctgac cactgagctg atctacctga gaaagctgaa gatcatgact gatctcctgg
     1741 cagctggtct gctgaatttg cagcgggtgg gactcctgac tgaggtgtca gctgagaccc
     1801 tctttggaaa tgtccccaaa ctgattagaa ctcaccggag attttgggag gaggtgttgc
     1861 agcccatcct ggaagacact cgtacttctg gccaaccttt ggaccctgtc agcttacaaa
     1921 atggcttcct gacatttggc cagcggttcc agccctatat ccagtactgc cttcgagtaa
     1981 agcagaccat ggcttatgcg cgggagcagc aagacacgaa cccgctgttc cgcaccttcg
     2041 tgcagtggtg tgaaaaacac aagcgctccg gaagacagac actgggtgac ttgctcatca
     2101 agcctcacca gcgcatcacc aaatacccac tgctgctgca ggctgtgctc aagagaagcc
     2161 ctgagccccg agcccagctg gccctggaca acatgatcgt agccgtggag tccttcctgc
     2221 aacacataaa tgggctggtc cgacggggtg aagagcagga gagtttaatg gctgtggccc
     2281 agcgcatagg accctatgag gtgctggagc cctccagcga ggaggtggag aagcacctgc
     2341 gtcagttctc caccctggat ctgatgactc ctatagaagg ggttgcccct gagaacacca
     2401 ggcagctgtt gctggaaggg cctgtgcgga tgaaggaagg gcgagaaggg aagatggatg
     2461 tgtacctgtt cctcttctcg gacgtgctcc tagtaaccaa acctcaacgc aaggtggaca
     2521 aagccaaggt catccgtcct cctctcatgc tggagaaact cgtgtgccga ccacttcgag
     2581 accctcacag cttcctgctg atccacctca cggaattcca gtgtgtctcc agtgccctca
     2641 ccgtgcactg ttccagttca acggagcgga cacagtggct gcagaagacc cagcaggctc
     2701 aggccactct gcagaagctg aaggccgagg agtatgttca acagaagagg gggctgctgg
     2761 ccctctatcg agaccagggc agggagtctc ccagccccag gccctccaca ccttccccag
     2821 aggactctca gagcagtgct gaggggaggg ctttggagtt cactgtaatc ccccgactgg
     2881 tagtgactga agatacagat gaagacacgc cctccgtgac cgatgatacc tcagactctg
     2941 gctatggcac cttaattcca agttctccaa aggactctca atcccccctt aacaggcttc
     3001 ggagcaaggc tcttcgtagg gaccctcgcc tcaccttctc caccctggaa ctcagagacg
     3061 ttcccttgcg cccccagcct cctgaccccc aagctctcca gcgacgaagt gccccagaga
     3121 tgccagaagg gatcctaaga ggaggcagtc tacccaggag agccccacca acctggtccg
     3181 aggaggaaga tgagaccttg acaccaggga atgtggtggt agaaacccta agcagggcac
     3241 aacgtcggag tccgctcccc cactctcccg cccatactga ctctgctggg gaaagcccct
     3301 gggagtccac agatgaagat gaggggcctc tatcccctgg actccgcccc cgctccttgc
     3361 gggctgagga catgctcagg gagatcaggg aggagctggc cagccaaagg atcgagggag
     3421 ccttggaacc ggaaccagga aatggcaagc tccggaggct gactagagcc cagctgcaga
     3481 gaatgagggg ccaccacgtc atacagctgg acacgcccat gtctacatca gacgtatgag
     3541 gaatgctggg gccctttgat acatctccta gaggaattgt ctccccaaga gtgctggtca
     3601 ccacctcccc ctggactcta cctcaaggat tcacctcaaa ccaagcctga cccaggcatc
     3661 atctccttga ctctgaaggt caagaactgg acattgtgtc tcacagacaa acccccaagt
     3721 cccacataaa actgccgaga aacatgactg ttttggttag aactggtccg ggtgagaaga
     3781 ggatatagca tgggtaccca tccggtggcg cctactgtta gctagcggga tgactggacc
     3841 ttccatgtca cttttcatgt tccgggcttt gccgggtctc tcctatccac agaccactct
     3901 ttccaaggtc agaggtcact tttagatttt tagtgtattt acaagagtcg ggggctccag
     3961 ctggagaccc cactgttctg tgcttgcccc taccttaggg agttcaaccg ttcatccatt
     4021 agtgtgatat aatcaataca aagactgttt tatctactgt gaaaa
//
