LOCUS       NM_001127566            3303 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus pleckstrin homology and coiled-coil domain
            containing D1 (Plekhd1), mRNA.
ACCESSION   NM_001127566 XM_001053766 XM_576067
VERSION     NM_001127566.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3303)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC161896.1.
            
            On or before May 23, 2008 this sequence version replaced
            XM_576067.2, XM_001053766.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161896.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132280, SAMD00132291
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..3303
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /note="pleckstrin homology and coiled-coil domain
                     containing D1"
                     /db_xref="GeneID:500685"
                     /db_xref="RGD:1566112"
     exon            1..351
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
     CDS             203..1720
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /note="pleckstrin homology domain containing, family D
                     (with M protein repeats) member 1; UPF0639 protein; PH
                     domain-containing family D member 1; pleckstrin homology
                     domain containing, family D (with coiled-coil domains)
                     member 1"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family D
                     member 1"
                     /protein_id="NP_001121038.1"
                     /db_xref="GeneID:500685"
                     /db_xref="RGD:1566112"
                     /translation="MFTSKSNSVSPSPSLEQADADALDISTKVQLYGVLWKRPFGRSS
                     AKWSRRFFIIKESFLLYYSESERKSFETNKYFNIHPKGVIPLGGCLVEAREEPSMPYA
                     MKISHQDFHGNVLLAAESEFEQTQWLEMLQESGKVTWKNAQLGEAMIKSLEAQGLQLA
                     KEKQEYLDKLMEETEELCLQREQREELERLNQVLEAEKQQFEEVVQELKVEQEQIKRE
                     LELTARCLKGVEQEKKELRHLTESLQHTLEELSIEKKKTLEMLEEDKNQPQPLTNQSE
                     QPPATDGLHSNLRQIEERMQELLAEKLLAEKRMKENEERSRALEEEREFYSSQSQALQ
                     NSLQELTAEKQQAEQELKAEVKVRMDLERRLREAEAALRSLEQGLNSKVRNKEKEERM
                     RADVSHLKRFFEECIRNAELEAKMPVIMKNSVYIHKAATRRIKSCRFHRRRSSTSWND
                     MKPSQSFMTSQLEANNIEELKEVAKRLSRDQRFRESIYHIMATQPGASALPRGGK"
     exon            352..445
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
     exon            446..535
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
     exon            536..612
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
     exon            613..704
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
     exon            705..757
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
     exon            758..852
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
     exon            853..946
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
     exon            947..1125
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
     exon            1126..1258
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
     exon            1259..1403
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
     exon            1404..1553
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
     exon            1554..3280
                     /gene="Plekhd1"
                     /gene_synonym="RGD1566112"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcggcgctc cggagattcg ccccagcggc tggctaagct tcccgcgccc ctccgctcac
       61 cgccccgctc gtcgggattc gcgccccgac ggcgtcccct gctgcccgca ctggccgtgc
      121 ccactgcttc ccacggccct ccctatccct tccaatccca cgaagggagt gggtcctgcc
      181 ggggcagagt cttctagaca cgatgttcac atctaagtcc aactccgtgt cgccatcgcc
      241 gtccctggag caggccgacg cggacgcgct ggacatcagc accaaagtgc agctctatgg
      301 ggttctgtgg aagcggccgt tcgggagatc gtcggccaag tggtcccggc ggtttttcat
      361 catcaaagaa agctttctgc tttactactc tgagagtgag aggaagagtt ttgaaaccaa
      421 taaatacttc aacatccatc ctaagggtgt catcccactg ggtggctgcc tggtggaggc
      481 cagagaagag cccagcatgc cctatgccat gaagatctca caccaggact ttcatgggaa
      541 tgtcctgttg gctgctgagt ctgagtttga gcagacacaa tggcttgaga tgcttcagga
      601 gtctgggaag gtgacctgga aaaatgccca gctaggagaa gctatgatca aaagcctaga
      661 ggcacagggg ctacagctgg ctaaggaaaa acaggaatat ttagacaagc tgatggagga
      721 gacagaagag ctgtgccttc agagggagca gagagaggag cttgagcgcc tgaaccaggt
      781 gctggaggct gagaagcagc agtttgagga ggtggtgcaa gagctgaaag tggagcagga
      841 gcagatcaag agggagctag aactcacggc aagatgcctc aagggtgtgg agcaagagaa
      901 gaaggagctg aggcacctca cagaatcctt acagcacaca ctggaggaac tctccataga
      961 gaagaagaaa accctagaga tgctggagga agataagaac cagccacagc ccttgaccaa
     1021 tcagagtgaa cagccaccag ccactgatgg tctccatagc aacctcaggc agatcgaaga
     1081 gcggatgcag gagcttttgg cagagaagct tctggctgag aagcggatga aggagaatga
     1141 ggaacgctca cgggccctgg aggaggaacg ggagttctac tcaagccagt ctcaagccct
     1201 gcagaactcg ctgcaggagc tgaccgcaga gaagcagcag gctgagcagg aactcaaggc
     1261 tgaagtgaaa gtacgcatgg accttgagag acgacttcgg gaggcagagg cagccttgcg
     1321 gagcctggaa caaggcctca attccaaggt tcggaacaag gagaaggaag agaggatgcg
     1381 ggctgatgtg agccacctga aaaggttttt cgaggagtgc atccggaatg cagagctgga
     1441 ggccaagatg ccagtcatca tgaagaactc ggtgtacatc cacaaggcgg ccactcgccg
     1501 tatcaagagc tgccgtttcc atcgacgacg gtctagcact tcctggaatg acatgaagcc
     1561 atcccagtcc ttcatgacct cccagctaga agccaacaac atagaggagc tgaaggaggt
     1621 ggccaagcgg ctaagcagag accagcgctt ccgggaatcc atctatcaca tcatggccac
     1681 ccagcctggg gcctctgcac ttccccgggg aggaaagtaa tgggaacgcc tcccctacct
     1741 cctgtctttc cttggtgggg cagcagggag gtctgattcc ccttggtcct ttccagcaga
     1801 gcactaccag gagaggggca ccctcattct caaaggaggt aatacctctc tgcctcaccc
     1861 ggagccctga ccttggaggt cagaagggag cattggaaga gagcactgga ttccctggaa
     1921 ctggagtcat gggtggttgt gagctatagt gtgggtgctg ggaaccaaat ctgggtcctc
     1981 tgaaagagcg gcaagttctc ttaaccactg agccatctct ccaggcctga gccctgacct
     2041 tgggtttacc ctaggtaggg gtaggtccac actgggtgct acctggttgt catgatgagg
     2101 cctggctctg tgtggtatct gttggtcaag aagagaagtt gtctattcca caaggactga
     2161 aaagttcctc tggtacccac tgtaccccct tggtgactct gccactctga ccctggtccc
     2221 atgacacccc ctaactctct tcgctcctga tcctccaatt tgtccagacc ctgcacttat
     2281 tccatgtcct tgagatggaa aagcaggccc tgagacacaa acccaggttc acagcacccc
     2341 accccctctc tgccgtattc ctggctgaaa ggccacccag gtctcctagt cacaaatggg
     2401 tttctccaga tacagctcca gcaatctgct ggagggtagc tgcctcgggc tcttgtgacc
     2461 ctgccccccg ggaggtcaca gagatctgtc tctctcccag ctggcacacc ttgcagcctc
     2521 ctcttcctgc agtggcctca ctcaatgaac caatgcagcc aggaacccac cacatgggag
     2581 cagggacctg tggggagccg gtagccattg gtgggttcag tgctgtcaga gtgacactgt
     2641 aacaccagcc tgcaggtttt atggaagacc actaccctta cgaggccaaa gactgaggaa
     2701 tgtgttcctc atctgtgagt cttttggccc atccctcaga agctgcctga gtctatcagt
     2761 cttgtcaaac aatacttggg gaggggcggg gacacatacg gtggttaaga gcacttgttt
     2821 ctcttgggag gacccagact tggttcccac atggtagctc acaaccatct gtgacttcgt
     2881 ttgccaggag atccaacacc ctctcctgac ctccacagac accaggccct cccatggtgc
     2941 gtgtacacac atgcagacaa aacatacaca taaaatagat ccttaaaaaa cacatttaaa
     3001 gggggccggg tgctaaggca gtgctggatc aaaggcatcc attttctatc agaagactga
     3061 agtgtcctga gggaggtaca gaagtcactc tggggaagaa cccttgtcaa ggtctgggct
     3121 gccctgttct ccatggttgc ttctgggtgg ggtgtttcgg agtcagtgca tccgagtgta
     3181 aatataaaac tttaagtgtg tctaaacctg cataaaccca gagctcgtct tacaaaacat
     3241 gtatgtggaa tggactttga aatgaagacg tagaaaacca aaaaaaaaaa aaaaaaaaaa
     3301 aaa
//
