LOCUS       XM_039101137            5351 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pleckstrin homology domain containing
            A7 (Plekha7), transcript variant X1, mRNA.
ACCESSION   XM_039101137
VERSION     XM_039101137.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101137.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5351
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5351
                     /gene="Plekha7"
                     /note="pleckstrin homology domain containing A7; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 13 ESTs, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:499249"
                     /db_xref="RGD:1598216"
     CDS             75..4166
                     /gene="Plekha7"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family A
                     member 7 isoform X1"
                     /protein_id="XP_038957065.1"
                     /db_xref="GeneID:499249"
                     /db_xref="RGD:1598216"
                     /translation="MAAAVGRDTLPEHWSYGVCRDGRVFFINDQLRCTTWLHPRTGEP
                     VNSGHMIRSDLPRGWEEGFTEEGASFFIDHNQQTTTFRHPVTGQFSSENSEYVLREEP
                     HPHMSKQERNQRPSSMVSETSTAGTTSTLEAKPGPKIIKSSSKVHSFGKRDQAIRRNL
                     NVPVVVRGWLHKQDSSGMRLWKRRWFVLADYCLFYYKDSREEAVLGSIPLPSYVISPV
                     APEDRISRKYSFKAVHTGMRALIYSTTTAGSQAEHSGMRTYYFSADTLEDMNAWVRAM
                     NQAAQVLSRSSLKRDKVERQAMPQANHTDACQECGHVGPGHSRDCPRRGYEDAIVFDR
                     REQEEERFRSQRDTLEGRRDRSKARSPYLPAEEDALFVDLPGGPRGQQAQPQRAERNG
                     LPPYGLGEQNGTSGYSRTAPPRANLEKHSQRKTNLAQTEHWAKAQKGDGRSLPLDQTL
                     PRQGPSQPPSFLENYQTLPRNTRYPSGSSSPPPRNLPSDYKYAQDRASHLKMSSEERR
                     AHRDGTVWQLYEWQQRQQFRHGSPTAPIGAGSPEFTEQGRSRSLLEVPRSISVPPSPS
                     DIPPPGPPRPFPPRRPHTPAERVTVKPPDQRRSVDISLGGSPRKARGHAVKNSSHVDR
                     RSMPSMGYMTHTVSAPSLHGKSLEELSLLLTRLQRHQSKLASVRNFAVGQLLHHYLTF
                     PACQADDTYLQLKKDLEYLDLKIKNNEPLINVLYKVLKKSARGCRPGRSMTGRDLLKD
                     RSLKPMKIAESDTDVKLSIFCEQDRILQDLEDKIRALKENKDQLESVLEVLHRQTEQY
                     RDQPQHLEKITCQQRLLQEDLVHIRAELCRESTEMENAWNEYLKLEKDVEQLKQTLQE
                     QHRRAFFFQEKSQIQKDLWRIEDVMAGLSVNKENYRVLVGSVKNPERKTVPLFPHPSV
                     PSLSPTESKPALQPSPPTSPVRTPLEVRLFPQLQTYVPYRPHPPQLRKVVSPLQSPTK
                     ATPQAEDEAPPRPPLPELYSPEDQPPAVPPLPREATIIRHTSVRGLKRQSDERKRDRE
                     QGQCVNGDLKVELRSYVSEPELASFSGDVPRPSLGLVGSESRYQTLPGRGLSGSTSRL
                     QQSSTIAPYVTLRRGLNAENSSVTFSRPKSALERLYSGDHQRGKMSAEEQLERMKRHQ
                     KALVRERKRTLSQGERTGLLSARYLSQPLPGDLGSWKREQEFDLQLLERAAQGDRKDK
                     EEGWLKVQATPVMELDLEPQDYDLDINRELSKPEKVSIPERYVEVDPEEPPSVEELQA
                     RYQKAEKIRNILARSSMCNLQPPGQDRNSLADLDTQMQEQERIINISYALASEASQRS
                     KQVAGSNGPMIQCALEKRGARVPAKPASSWDMALSAHCGNPSS"
ORIGIN      
        1 ctcgccccgc cccttacccc gcccctttac ccatcccccc ctcccccggt ccggggctca
       61 ggcgctgggc gaacatggcg gctgcggtcg ggcgggacac cctacctgag cactggtcct
      121 acggcgtctg tcgggacggc cgcgtcttct tcatcaatga ccagctccgc tgcacgacct
      181 ggctgcaccc gcgtacggga gaaccggtca actccggtca catgatccgc tcagacttgc
      241 cgcgcggctg ggaggagggc ttcacggagg agggcgccag tttcttcata gaccacaacc
      301 agcagactac aacattcagg catcctgtga ctggacagtt ttcttcagaa aacagtgaat
      361 acgttctgcg ggaggagcca cacccacata tgtcgaagca agagagaaac caaagaccgt
      421 ccagcatggt cagcgagaca tccacggctg ggacgacgtc caccctggag gccaagcctg
      481 gacccaagat catcaagtcc agcagcaaag tgcacagctt tgggaagagg gaccaggcca
      541 ttcggaggaa ccttaatgtt ccggtggtgg tgaggggctg gctgcacaag caggacagct
      601 ctgggatgag gctgtggaaa agacgctggt tcgtgctggc tgattactgc ttgttttatt
      661 ataaagacag ccgagaagaa gccgttctcg ggagcatccc tctgcccagc tacgtcatct
      721 ccccggtggc ccccgaggat cgcatcagcc gcaagtattc ctttaaggct gtgcacacag
      781 ggatgagggc tcttatctac agcaccacca cagcgggctc tcaggcagag cactcgggca
      841 tgaggaccta ctacttcagt gctgacaccc tggaggacat gaacgcctgg gtcagggcca
      901 tgaaccaggc tgcacaggtg ctgtctcgat catcattgaa aagggacaag gtggaacggc
      961 aggccatgcc acaggccaac cacactgacg cctgtcaaga atgcggccac gtggggcctg
     1021 gacactcaag agactgtcct cgtcgaggct atgaagatgc cattgtcttc gacaggaggg
     1081 agcaggagga ggaacgcttc cgttctcaaa gggacacact ggagggcagg agggacagga
     1141 gcaaggccag gtccccatac ttgccggctg aggaggatgc cttgtttgtg gatctacctg
     1201 gtgggccccg aggccagcaa gcacagccac agcgagctga gaggaatggg ctaccacctt
     1261 atggcctggg agaacagaat gggaccagtg ggtactcgag aactgctcct ccgagggcca
     1321 acctagagaa acacagccag aggaagacca acctggccca gacagagcac tgggcaaagg
     1381 ctcagaaggg ggatggcaga agcttgcctt tagaccaaac acttcctcgc cagggtccca
     1441 gccagccccc gtccttcctg gaaaactatc agactcttcc caggaacact agatatcctt
     1501 ctgggagctc ttcacccccg ccccggaacc tgcccagtga ctataagtat gcacaggacc
     1561 gagccagcca cctgaagatg tccagtgagg agcgccgggc acacagagac ggaaccgtgt
     1621 ggcagctgta tgaatggcag cagaggcagc agttccgtca cggcagcccc actgcaccca
     1681 taggagctgg ctccccagag ttcaccgagc agggccgcag ccggagcctg ctggaggtgc
     1741 cccgctccat ttccgtgcct ccatctcctt ctgacatccc tcctccgggg cctccgaggc
     1801 cctttccacc ccggcggcca catacaccag cagaaagggt cacagtgaag ccacctgacc
     1861 agaggaggag tgtggacatc tctctgggag gttctcccag gaaggcacgg ggtcatgctg
     1921 tcaagaactc ctctcatgtg gaccggcgtt ccatgccctc catgggctac atgacccaca
     1981 cagtgagcgc tcccagcttg catggaaaat cgctggagga gctctcgctg ctgctcaccc
     2041 ggttgcagcg gcaccagtcc aagttggcca gtgtgcgaaa tttcgccgtg ggccagttac
     2101 tacaccacta cttgaccttt cccgcctgcc aggctgatga cacctacctc cagctgaaga
     2161 aggacctgga gtacctggat ctgaagatta aaaataatga acctttgatc aacgtgcttt
     2221 acaaagtgct gaagaagtca gcacggggct gtcggcccgg gagaagcatg acaggccgag
     2281 accttcttaa ggatcgaagt ctgaagccca tgaagatcgc cgagagcgac actgatgtca
     2341 agctgagcat cttctgtgaa caagacagga tactccagga cttggaagac aagatccgag
     2401 ctctcaagga gaataaagac cagctcgagt ctgtgctgga ggtgctgcac agacagacag
     2461 agcagtaccg agaccagcca cagcacctgg agaagatcac ttgccagcag aggctcctgc
     2521 aggaggacct cgtccacatc cgcgcagagc tctgcagaga gtccacggag atggaaaatg
     2581 catggaacga gtacctgaag ctggagaagg acgtggagca gctaaagcag accctgcagg
     2641 aacaacacag gagagccttt ttcttccagg agaagtcaca gatacagaag gatctgtgga
     2701 ggattgaaga tgtcatggca ggcctgagtg tgaataaaga gaactacaga gtcctggtgg
     2761 gatctgtcaa aaatccagaa aggaaaacgg tgcctttgtt ccctcaccca tctgtgcctt
     2821 cactctctcc aactgagagc aagccggccc tgcagcccag ccctcccacc agccccgtgc
     2881 ggacacctct ggaggtccgg ctctttccac agctgcagac ctatgtgcca taccgacctc
     2941 acccgcccca gctgaggaaa gtggtgtctc ctctgcagtc accaaccaag gcaacgcctc
     3001 aggcggaaga tgaagcacct cccaggccac cacttcctga actctacagc ccagaggacc
     3061 agcccccagc cgtgccacct ctgccgagag aagccaccat cattcggcac acgtctgtgc
     3121 ggggactgaa acgacagtca gatgagagga agagggaccg ggagcagggc cagtgtgtga
     3181 acggggactt gaaggtggag ctccggtcct acgtgagtga gccagagctg gccagtttca
     3241 gtggggacgt gcctcggccc tccctgggcc tcgtgggctc tgagagcagg taccagacac
     3301 tgccaggcag agggctctca ggctccacgt ccaggctcca gcagtcatct accattgctc
     3361 cctatgtcac actccggagg ggtctgaatg ccgaaaacag cagtgtaacc ttctctagac
     3421 ccaagagtgc cttggagcga ctgtactcag gggaccacca gcggggcaag atgagtgcag
     3481 aggagcagct ggagcggatg aagagacacc agaaggctct ggtccgggag cgcaagagga
     3541 cactgagcca aggagagagg acgggtctgc tctcagcccg atacctcagc cagccactgc
     3601 ctggagatct cggctcatgg aagcgagaac aagagtttga cctgcagctg ctggagcggg
     3661 ctgcacaagg ggacagaaaa gacaaagagg agggctggct caaagtgcaa gccacacctg
     3721 tcatggagct ggacctggag ccacaggact atgacttgga catcaacaga gagctgtcta
     3781 aaccagagaa ggtctccatc ccagagcggt atgtggaagt agaccctgag gaaccaccca
     3841 gcgtggagga gctgcaggca cggtaccaaa aggccgagaa aatacgaaat atccttgcgc
     3901 ggtcaagcat gtgcaacctg cagccaccag gccaggaccg caacagcctg gccgacctgg
     3961 acacgcagat gcaggagcag gagcggataa tcaacatttc ctatgccctg gcctctgagg
     4021 cctctcagcg tagcaagcag gtagcaggca gtaacggacc catgatccag tgtgcattgg
     4081 agaagcgtgg agccagggtc ccagcgaaac cagcatcttc ctgggatatg gccctctctg
     4141 cccactgtgg aaacccttcc agctgaacag gggctctggc tggaggagag agcaacctac
     4201 ccaccatggt gggtgcagca tggagccagg gccccatcct accacatgcc catttgtctc
     4261 ggtccaggtt cctttttaca gatgacaagc acttttgata cacgatgtga aatatactgt
     4321 attttagaat cagaatatat tttataatgc tcacctcaag gactggatga ctcgtaaggt
     4381 gagcctgctg ggttttgtag acacacatag ggtttcaggt actatggggg gtggggggga
     4441 taatgggtag ggagagggac aggcaagcag gggccatttc caccacccgt gagcccagac
     4501 agtgacagga tttgaggctg tcttccagta tgaagctcat tgtgctgtcc aggaaaagag
     4561 aggcagtcga ctgctgggat ctgagtccct gctgataccc agccttggac actccacctg
     4621 gatggctcag ggagcctgtc tgtgccttgc cccttggttc tgactgagga gcaaccatgt
     4681 gctcaaaagc cttggcttct tcgtctgtcg atggagtgac gtttcctcag caaacaattc
     4741 tcagaagaag aaaaaaaaaa agcccctgtg agtggaaact ggagaagtgt tatagcaata
     4801 aacgcaacat tgggtaacat ctgcctacag atgcctagcc ttgagccatc cctgcagcca
     4861 ggcagtgcta aaggaccttt gctgtctgct gtggggaaag cccggacagc ttcccttgac
     4921 tccgtctggt gaggagggca ggcagggccg ggacacagga ttgtgacttg acaccagccc
     4981 cgctgaggag gagggggccc tttatttaac atgtctcatg atattctaca tgcgggaaac
     5041 aatgagaaca aaaaaacacc ttcattgggc ggagccacat tttaaacaaa aatttgtctt
     5101 tgactatgct taaaagaaga agaaaaaaaa tccttgaata tatttagaag ttactgtctg
     5161 tttttaacta actccatatg ctgccagtat caacttcatg acatttgcca aaataagatt
     5221 ttattttttg cctttataag attttgttgg aaaaatgaaa tgaatatttt gcaagaaaaa
     5281 gttaatttaa ataaaagtgt aatggtttgc aaaaaaaaaa aagtgatgta tagattaaaa
     5341 tattaacctc a
//
