LOCUS       XM_039095214            4804 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pleckstrin homology domain containing
            A2 (Plekha2), transcript variant X3, mRNA.
ACCESSION   XM_039095214
VERSION     XM_039095214.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039095214.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4804
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4804
                     /gene="Plekha2"
                     /note="pleckstrin homology domain containing A2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 14 ESTs, 1 long SRA read, 4 Proteins, and 98%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 67 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:684785"
                     /db_xref="RGD:1586710"
     CDS             326..1603
                     /gene="Plekha2"
                     /codon_start=1
                     /product="pleckstrin homology domain-containing family A
                     member 2"
                     /protein_id="XP_038951142.1"
                     /db_xref="GeneID:684785"
                     /db_xref="RGD:1586710"
                     /translation="MPYVDRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMD
                     NPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLK
                     DWVEALNQASKITVPKAGTVPVATEVLKNLTAPPTLEKKPQVAYKTEIIGGVVVQTPI
                     SQNGGDGPEGSEPGTHAFLRRSQSYVPTSGCRPPSGPSLIKSGYCVKQGNVRKSWKRR
                     FFALDDFTICYFKCEQDREPLRTIPLKDVLKTHECLVKSGDLLMRDNLFEIITTSRTF
                     YVQADSPEDMRSWIEGIGAAVQALKCHPREPSFSRSISLPRPGSSGLTSGPNSILSRR
                     RPPAEEKRALCKAPSMASSWQPWTPVPQAKEKLLSAENAPEDSLFMPNPGESNATGAL
                     ASSRVRHRSEPQHPKEKPFLFNLDDESIRTSDV"
ORIGIN      
        1 acaggcaggc tttggttgtt ggttgctgct gaagcggatc tgcaaatgtg agaaaagggc
       61 agcagagtgt atctcaggga tagagagcct gctttgcaag tccccgtacc ccaccccctt
      121 gccctccagc cccagaggcg gtgagggatg gagaccagtg ttaggtcaaa ccccaggaga
      181 gcggcgctgc cttcctccca ggtgtttgct gcacgtgcta gaacactgga cagaccaagt
      241 agcagaagtg tgaccatgcg tgcatctcac tgatacttct tggatttcct gtcgtgatac
      301 agggtgatgt gagcagagcc caggaatgcc ttatgtggat cggcagaacc gaatctgtgg
      361 gtttctggat attgaagaca atgagaacag tggcaagttc ctacgaagat actttatcct
      421 ggatacccag gccaactgcc tcctctggta catggacaac ccccagaacc tggcagttgg
      481 ggcaggagct gttggatctc tgcagctgac ttacatctcc aaggtgagca tagctacccc
      541 aaagcagaag cctaaaactc cattctgctt cgttatcaat gctctgtctc agagatattt
      601 tcttcaagcc aatgaccaga aagatctgaa ggactgggta gaagccttga accaagccag
      661 caagatcact gtacccaagg ctgggacggt acccgtggcc acagaagttc tcaaaaacct
      721 gacagctcct cccaccctag agaagaaacc gcaggtggcc tacaagactg agatcatcgg
      781 gggagtggtg gtgcagacac ccatcagcca gaatggtggg gatgggccgg aagggagcga
      841 gccagggact cacgccttcc tgcgaaggtc tcagagctac gtccccacgt caggctgccg
      901 tccccccagc gggccttctc ttattaagag tggctactgt gtgaagcaag ggaacgtgcg
      961 gaagagttgg aaacggcgct tctttgccct cgatgacttt accatctgct acttcaagtg
     1021 cgagcaggat agagagcctc tgcgcaccat accactcaag gatgttctca agactcacga
     1081 gtgtctggtc aagtccggtg atctcttaat gagggacaac ctgtttgaaa tcataaccac
     1141 ttctaggacg ttctacgtac aggcagacag ccctgaagac atgcgcagct ggatcgaggg
     1201 gatcggagca gctgtccagg ccctcaagtg ccaccccagg gaaccatcct tttcaagatc
     1261 catttctttg cctcgacctg gaagttccgg ccttacaagt gggcctaact ccatcttgtc
     1321 aaggaggcgg ccaccagcgg aagaaaagag agctctttgt aaggccccct ccatggcctc
     1381 atcctggcaa ccttggacac ctgtccccca ggccaaggaa aagctgttgt cagccgagaa
     1441 tgctccagag gactctctat ttatgcccaa ccctggggag agcaatgcta caggggcatt
     1501 ggcaagttcg agagtcaggc acaggtcgga gccccagcac cccaaggaga aaccattttt
     1561 attcaacctt gatgacgaaa gcatacgaac ctctgatgtg tgatgggcag tgccgtcgag
     1621 tgcaggagag ccggcggcta tgagtcattg tctctgcctc ggtagaggac agaggccaat
     1681 gacactcgca gaagagaagc ccatctagct gtcgttgttt ttgctattat ttgacacagt
     1741 ttatttaatc ggagaaagtc actaggttag accggcaggc atactccatt agttcttgaa
     1801 tgcccccggg tttcctagtt gagggttagt tctcaggctt cctgcctaga ggaggctaga
     1861 gtccaatctc accaataagc tttcccctct tgtgtttctt tcattttctt ggtttcactt
     1921 ccaggctatg tgcaggatct caggctaaga actgctttcc tctacgcctg tgtgttggct
     1981 gaagtctggg gatcaggcag atggttaaca tccagactga aaggcactgg gtgggactca
     2041 ggttacacgg ttcggttggg atccgtctga gacttgtcat tagaatctag ggagtgaaaa
     2101 gtgaattttg ggagatctcc tcggagcagt tccttcagga tcacctccca ggggaccgga
     2161 taggacctcc tgtgagtcat gagggctaat taaaatgcta tagccacttg cagttattaa
     2221 gatgtcctct tgatgctcca tgaccccaaa tgctataaag ctgagtgaca gagccaccag
     2281 tctactttct gcgtcaggcg cttaaatgtt atgattgcgg agaccagaat agacacttct
     2341 cttgacactg aggtgtgtgt gtgtgcgtgc gtgtgtgtgt gtgtgtgtgt gtgagagaga
     2401 gagaaagaga gagagagaga gagagagaga gagagatggt taagtgtaga gtgattttgt
     2461 atgtgtgagt gtgtatgtat gtgtgatgtt taagtgtaga gtgattgtgt gtgtatatgt
     2521 atgtatgtat gtatgtatgt atgtatgtat gtgtgatggt taagtataga gtgactgtgt
     2581 gtgtgtatgt atgtatgtat gtatgtgtga tggttaagtg tagagtgatt gtgtgtgtgt
     2641 gtgagagaga gcgagagaga gagagagaga acactcctgc actcatatta agacaatctc
     2701 tatctcagag gcttaggttc agataaagca gctactgaga agggatggat ggctgcttat
     2761 ggcagtaagc accttcgatc cgtgttttcc agacaggagg actcttcttt gacagtgaat
     2821 ctcgaatccc tgtctcacag ctctttcagg atgggtcggc ttttgtgtaa tgctaagtgc
     2881 ttgcacactg tgcgtcctgc tgacccactt gccctttgct tccttgtgtt gcctggtaaa
     2941 tgaagcaact cacacaccag gtggaacccc agcatccgat aagagcctct ggattcacta
     3001 gcgaagaggc tcaaacagga ctgcattttt catgggatag ctgggaataa agaaattgaa
     3061 tcagaggatg aattgctggc tagagatttc caccccaaac ttagggtgtg gcttttccca
     3121 ctgggcagga tactatttcc cgtgcctttg ggggcatttg tctatcagtc ttcaatgaac
     3181 ctgtgctacc agaaagttgt ggccattccc tacagggaga tcactcactc ctatctgtgt
     3241 aacattcccc tgctaggtgt attcactctg ttgtgaagta gacacctgta ctgctaagaa
     3301 gaaactagga ggcattttta tttaagctag ttagcactcc gtgcccatag tgaatgcaaa
     3361 agcaggcaca aagctctcca gggtgagagg aatcatgttc tttctaatgt gactgtgacc
     3421 ttgaacctgg tgccacactg aagactcctg ggctctgtgt atgggagatg tcccccactt
     3481 taagtctgga cttgtgaccc tgatgtaaaa aaacaaaaac aaacaaaaaa caaaaaaacc
     3541 cactggactt ctttctctgt tcatgatctt tcctgtctcc caccccctaa aaaatctttt
     3601 gtgtgttttg gttttcaggg ttcggggatt atttatttat gagtgagtaa ggttataacc
     3661 tacttcaaaa gtcagtgccc tttgactctg gtttcagctt aaaaatcttc ccctagaaaa
     3721 ttctttggct gttcaacaga attgctcaat gtcagatgag gaagtaagga aaataaatca
     3781 ggaactcctg aagggcctcg aacttgccct ggctcacaga aatgatgtca tcgttaggct
     3841 tttaaattgc aaaatctgtc cgtccctctc ctagaaactg tttgcttggt cattactgcc
     3901 ccatcaacag gtcgttacag aaagctgata ggttttagta catagtttga aatcatgtta
     3961 cattaaacac agtgcagttt atattatgta gacaaaggga gggtacagag ttgcagtgac
     4021 cctaagcaac caatctgtga gacttccagg ttagaatact gttaatatcg gtggctggaa
     4081 tatctttgtg aagcctcaaa acattgaaat tctcagtcct tatttcagaa ttccccttct
     4141 gtccatattt ccggccagtt ttatacaatt cttccccctc cccacctttt aaatttgctt
     4201 ttttttgcta gagtcttgct atgtagtcca gggtggtttt gaactggtaa tcctcctgcc
     4261 tcagcctcct gagtacttgg attacaggcc tgtgccaccg tatccagcct atgacagtat
     4321 tttaacctga gccaaagatg gtacacgaac ctttagtttt ctgtgtatcc gacaggcctc
     4381 tgtcggaggg gaaagtgtgg tgccatacgg gtttgtggtt aagcctagaa tgtggataaa
     4441 tccgaaggga tttctggatt ataaaaggta ctgcgttttc tttgtggaat aaaagcagtc
     4501 tctgggggtt ggggatttgg ctcagtggca gagcgcttgc ctaggaagcg caaggccctg
     4561 ggttcggtcc ccagctccga aaaaaagaac caaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     4621 agcagtctct ggggttgggt ccttccataa cgtttcagag gcattgctct ctgtagctga
     4681 agtttgccct attccctact cttaaaaggt ttagtggggg gttggggatt tagctcagtg
     4741 gtagagtgct tgcctagcaa gcgcaaggcc ctgggttcag tccccaactc tgaaaaaaag
     4801 aaaa
//
