LOCUS       XM_008763526            9905 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PLAG1 zinc finger (Plag1), transcript
            variant X5, mRNA.
ACCESSION   XM_008763526
VERSION     XM_008763526.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008763526.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9905
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9905
                     /gene="Plag1"
                     /note="PLAG1 zinc finger; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 18 ESTs, 5 long SRA reads, 12 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:297804"
                     /db_xref="RGD:1305286"
     CDS             3620..5119
                     /gene="Plag1"
                     /codon_start=1
                     /product="zinc finger protein PLAG1 isoform X1"
                     /protein_id="XP_008761748.1"
                     /db_xref="GeneID:297804"
                     /db_xref="RGD:1305286"
                     /translation="MATVIPGDLSEVRDTQKAPSGKRKRGESKPRKNFPCQLCDKAFN
                     SVEKLKVHSFSHTGERPYKCTHQDCTKAFVSKYKLQRHMATHSPEKTHKCNYCEKMFH
                     RKDHLKNHLHTHDPNKETFKCEECGKSYNTKLGFKRHLALHAATSGDLTCKVCLQTFE
                     STGVLLEHLKSHAGKSSGGVKEKKHQCEHCERRFYTRKDVRRHMVVHTGRKDFLCQYC
                     AQRFGRKDHLTRHMKKSHNQELLKVKTEPVDFLDPFTCNMSVPIKDELLPVMSLPSSE
                     LLSKPFTNTLQLNLYNTPFQSMQSSGSTHQMITTLPLGMTCPIDMDTVHPSHHLAFKC
                     PFSSTSYAISIPEKEQPLKGEIESYLMELQGGAPSSSQDSQASSSKLGLEPQSGSPDD
                     GAGDLSLSKSSISISDPLNTPALDFSQLFNFIPLNGPPYNPLSVGSLGMSYSQDEAHS
                     SVSQLPTQTQDLQDPANTVGLGSLHSLSAAFTSSLSSSTTLPRFHQAFQ"
ORIGIN      
        1 acgtcggcgg ctgcggcggc ggcggcggcg gcggcggcgg cggcggcagc tgcaagttga
       61 gctgcagggg cagcgcatac actacaatgg ctgctggaaa gaggcgtaag gaaacaattt
      121 ccaggcccgc cgcgtccagc ccgaaatatg agaaaaaaat tattagaaat tccgcgggcg
      181 gtgtaaaggc ggcggacggg ccggagggag gatgttaaag ccccgcggtt gcctctcagt
      241 gctgccttgg tggtattggg cacccagaat gcttcagtct gtaatgatct attaataagg
      301 tggcctaact agagtttgca gcagggtctc agttacttta ctgtcattta tgggaaacag
      361 cagtgactaa aactggcctg agcctgccct gagctgccta cagttgactg ctcattctct
      421 gaaggtcttt ttttttgttt gcttgatttt ggcatttgtt tttaattttt tgacagtcta
      481 atatatgtat tgaatgcatt tcgaacatac cccattaccc tttcttaggt ttttgtaaat
      541 tcaagatagt taattttttc ttcattagca agcaactcta tagaatggga gctaactgat
      601 gagaatgtcc gagttaggat caatgatgtt ttaaagcaat gttcttaata tggtggtgcg
      661 tctccttcaa agttgtagtt agctgtgtaa tctagttcat ctcctaggta gtcttcaaga
      721 ttctattagt gtctcataca ttaaaaaacg ttaccactgc taagcttcct tctgtgatct
      781 accctgatgg aaatgtttta agcacttgtt gatatttttc tgaattgtga actaatggta
      841 tgttataatt agtataagga aaagcaaagc cttggtgatt gataacattt gctcttagca
      901 aaatctgact tttaaaagtg aaaaaactat taatgccggt aagtattgtt caaaactcat
      961 aactgttgac agtgcaactc tcagaacctg agacatccaa ttaaaagcaa aaaccaaaat
     1021 aaaagccctg tttcactgta cacccaacct ttggctgaca cctcatagaa gttggtttca
     1081 atggaccctc tgacgtgcaa tgtatttgct tgttattttc ctccatgaac cactgtttcc
     1141 ccgagagtaa gagtcagcat aagaagatga acctttatgt ccaagcgtac gcccttccct
     1201 cttctcccac tcctttctat tggatgcaga atcacctttg gaatggggta gaggcggtgt
     1261 ctgcttagat cccagcggca gctggggtat agtattctga aacacttcac tgtggagcag
     1321 tgtagagggg tgtctgtagt ctctgccttc cttcacagtt tctcagacaa aggcaaggca
     1381 gaatgcccat cactcgtatg atcagtcttt gatcaattaa ccagaaacga aaaacataaa
     1441 ttaaggattt taccccttta gacgttttag agcagtaatg agatttcttc ccccaccgct
     1501 gccttgagca catgaaagag agtacacaga taacttcggt taacatttat ctagggttat
     1561 aggaatataa actgtattta acgtttatgt ttattctgtc aaaaaataat tctaatcaac
     1621 tcttgacatc ctgtgtcttg gggaaaatga ccagttcttt gaaattattt cacaaccaat
     1681 aaaaaattca aagtaagata aaaatttaga gaaattaatc ataatttagg agttatattt
     1741 taagataaag taatttaatg tgatcgcttt atttacaatt ttatttctga ctataagata
     1801 tccagtatct gactataaga ctgtagacac cttcatttat gcattgtttg aaatacttag
     1861 ttgccaaagc attgctgtta taaaatgtca ccgtacaaat aagcatagat agaattttat
     1921 gaatacacaa atttattatt tgcctgtcag tttagtgtta gatttaattc tgctcaaatc
     1981 atccactcag aattgctaat tattttaatg cttaattaaa ttatttaaaa atttaccttg
     2041 caaattgtct ttcagacttt tttaattctt tctttttgga gattttattt ggaagttctc
     2101 atagaaaaat aacacagaac cgtcttctga ttctttaagt gtagtgacaa catttatcca
     2161 cacacaggtt ggtttgctaa tctgcccttg tcatagatta taatacaaca taagtgaagt
     2221 gggagtctaa gaccgaagtc tcattttgac cacacagatg ccatcacata gttcaggatc
     2281 agtgacgaca gatagagctc tcttgggtca ctgactgcag gggtgagatg aatatgaaaa
     2341 ccctctatga agtatttgca ttatccagat aacagtatat aaagtgatct ttcatattta
     2401 taattaccat atcaaacatt cagtgtatgt cctgggcaag taagtattta caaagccaat
     2461 tttgctattt tgcaattttg atgttcttcc acttatgcat gtcctgtgct gtataaaaat
     2521 ggggcttttg cttgaacttt taaaggtgtc tgttttatct aaaattttat ttttctttta
     2581 aaccataaga atatactggt ttctgatata cactcagtaa ttttgtaatg atgcttgaat
     2641 gtcctctctt aaatattttt gttgcatatc atccttacct atcatcaaat tctgaaagaa
     2701 ttttatttaa ggaaatactg ttagattgtt acacaatatt agaagttctt taacctactc
     2761 tgtcattgac atatcctttt gttactgatt tctaagtatt tgatttatat tatttctctc
     2821 aagtttttca aattaatact tctgaataat taattaaaat aatcacaggt tactaactac
     2881 tgtttgcctt gtattctttg taataattgt aggtcttttt gactttacat cattgttatt
     2941 cttgcctttt ctttcctttg tgaacattaa catagtttat atgtgtgctg tcagtctgct
     3001 aaggaccttg ctactaagaa gcaccttaaa gctatcttta agatttctca acagtggtct
     3061 cagtcaacaa acattgccgt ttccctgata cctgcctcct gcagcagacc tgtacttaac
     3121 ttccctcgca tgacagcaga gtggttgctc cgttccagcc atccttagcc attctttagt
     3181 ttaagttggc agatctgcaa gtagcgtaag gggggttcta agaagcccca gtcacaactg
     3241 tggcagtgtg ggtggcagta ctgtaatcag gaggaaactg agttctatta agctcaatga
     3301 atttttatct gttttgttta cagtccgtaa ctcttgctta gatttctttt ttattaacaa
     3361 gtggggagcc attcagcatc acaaattgac atttttttct agattggcca aaatgggaag
     3421 ggatggattc tgctctcttc cacgaagagt taatgggact ggctaagatc aaagtctgag
     3481 gcttttttcc atcactaatc agtccctttt tgctttcttt tacgaccaca tgaaacttga
     3541 gaagccacct aaagctaaat cacttagtgg agttgggcag ttcccaggtg tccaacgaga
     3601 aggcctggtt taggctgcga tggccactgt cattcctggt gatttgtcag aagtaagaga
     3661 tacccagaaa gccccttcag ggaaacgtaa gcgtggtgaa agcaaaccaa gaaaaaactt
     3721 tccttgccaa ctgtgtgaca aggcctttaa cagtgttgag aaattaaagg ttcactcctt
     3781 ctctcacacg ggagagaggc cctacaagtg cacacaccaa gactgcacca aggcctttgt
     3841 ttctaagtac aaattacaaa ggcacatggc tactcactct cctgagaaaa cccacaagtg
     3901 taattattgt gagaaaatgt ttcaccggaa agaccatctg aagaaccacc tccatacaca
     3961 cgaccccaac aaagagactt ttaaatgcga agagtgtggc aagagctaca acaccaagct
     4021 tgggtttaag cgacacttgg ccttgcacgc tgccaccagt ggcgacctca cctgcaaggt
     4081 gtgtttgcag acttttgaga gcacaggtgt gctcctagag cacctgaaat ctcacgcagg
     4141 caagtcctct gggggcgtga aagagaaaaa gcaccagtgt gagcactgcg agcgcaggtt
     4201 ctacacccgg aaggatgttc ggagacacat ggtggtgcac acgggaagaa aggacttcct
     4261 ctgtcagtac tgtgcacaga gatttggacg aaaggatcac ctcactcgac acatgaagaa
     4321 gagtcacaat caagagcttc tgaaggtcaa aactgaacca gtcgatttcc tggacccatt
     4381 cacctgcaac atgtctgtgc ctataaaaga tgagctcctg ccggtcatgt ccttgccttc
     4441 cagcgaactc ttgtcaaagc cattcaccaa cactttgcag ttaaacctct ataacactcc
     4501 atttcagtcc atgcagagct ctgggtctac tcaccaaatg ataacaactt tacctttggg
     4561 aatgacgtgc cccatagata tggacactgt tcacccctct catcatcttg ctttcaaatg
     4621 cccgttcagt tctacctcat acgcaatctc tattcccgag aaagaacagc ccttaaaggg
     4681 ggaaatcgag agttatctga tggagttaca aggtggcgca ccatcttcat cccaggattc
     4741 tcaagcatca tcgtctaagt tagggttaga gcctcagagt ggctccccag acgatggtgc
     4801 tggggacctc tccctgtcaa agagctctat ctctatcagt gaccccctga acacaccagc
     4861 attggatttc tctcagttgt tcaatttcat accattaaat ggtcctcctt acaatccgct
     4921 ctccgtggga agccttggga tgagctattc ccaggacgag gcgcattctt ctgtttctca
     4981 gctgcccaca caaacacagg atcttcagga tcctgcgaac acagtgggcc ttggctctct
     5041 gcactcactg tcagcagctt tcaccagcag cctaagctca agcactaccc tgccccgttt
     5101 ccaccaggcc tttcagtagg gtctgggccg agggattcac cggaggtgct tgtgcagccc
     5161 cgcctgcaaa gaccatttat attctagtgc ctactttaac acaacacaga aacttctcct
     5221 tttgtataat atcaggtttt atgaagccag taaataggaa ttagcctctt tgataagctt
     5281 tgaaatggtt cgtgtttaac tacgtttgct gtttctcctg atttcctgcc agttgtcata
     5341 gtctcggagt tttatttcat agaggagcgc cattattatc actaaatttt acaagtcctg
     5401 tgttcaaatt actgttagac cttaacattc tcacttttgt ctaatagcaa tgggcattgg
     5461 actttttttt ttttgcaaat gtgcagtaca atgtaaatct tctatgaaat gtgtgtgaag
     5521 aactgaagtg tttcacattt ctttactagc cactaaatgg attcataatc aagtgtgttt
     5581 taaatgagtt aagaatccag tttggggaga gtatagtggt ttcctaaata caccatcatt
     5641 tgagatcaat atattttgaa gactgctatt gtctggctaa aataagaagt ttcagtatct
     5701 atttaataga aacctagaga tgttacgggg tgttctgtgt tagaactagc cctcaggctg
     5761 atttgccaca tttcaaccat ctttccgtta acagtgtgtg gcctcggagt cttcaggatc
     5821 agtgtagaag tgttctgttg tatgcccttc acctttcata ccccaggatg gcttcacaat
     5881 accagcattc ttactttgca tgttggtcca gttagtgcag agtcttagaa ccattgtggg
     5941 acaatagaca gtaaatatat gaagcccaga gtggctggct gcctgaatcg tcggggtgat
     6001 agactcctca ccaggaagat ggatgtaaaa cgtacagcca aaccccagca cttgtctaga
     6061 gaatgtccac tgttgccaga actgagaact ggactcctat cgcatcactt ctaaaacagc
     6121 agtcttgccc gtgcgccctt gctcagtgca tatacatctt tccctgccgt gtttggatgg
     6181 agaacttaaa aattaaacac atcaaaaagc aacttgacga gttccacagt tttacaccac
     6241 caaaagttgt taagagccca cttttacaca tctccaggag acaggaggaa tgttagaaat
     6301 aagttgaatt tatagaggaa acagaggaaa ataaagcaaa caccaaatga atacgaatgc
     6361 accaaggatg tggtgctcac tgagcaaggt agcaatgggc ttcctcttgt cagacagcca
     6421 ccaagaatgt catcggtagc tccgcgtata tcttcctaag ggttatttgt ggcatcaacc
     6481 tacgagactt actaagcact tgttaacacc ttattctgga ccccttctgt tggggcaggg
     6541 agttttatag aagagtatat atctctttaa aaaaaaaaaa aaggaagaaa ctatttttta
     6601 atctctgagc actcgttagc cctggctggg gaagcttctt cccttgtgta agggccagtt
     6661 atcactgcat attgtattgt ttacccatca ctctaagcat aaacagatta ctgactatga
     6721 tgcattattt acaatgcctg ggagtagtct aaattgagaa gtgtaaactg tcctgtgaat
     6781 ggggctttca ctatatgtca tacacacgcc tagtgcactt catagaatca gagctgctcc
     6841 ctagagggct caagctcctg gttctaaccc tagagcagta gtttttatac gtatgtattt
     6901 aaattttatt gtgaaaaata cattttatta aagaaagtgt tccaaaggca ttaaaattat
     6961 atacgttaat aaggaaatac attttaactc ttcaagctgc tcctgagctg agggtgggag
     7021 cgcactcact cagaaagtgg gctcttcgca tgaccgcttc cttagtttct atgaaaccga
     7081 tcacgtaccc taatgttcta gttggatgat tagtgttcaa tattgcttta atcaccactt
     7141 ttaaaaggag aggacatttg gtgacagagc acaagtaaat aaaaaaacct attattatgt
     7201 agagttcaca gacaccacat atgaaagcac tagtttattc tatctaaaaa ttacttaaga
     7261 agtcacattt atgacctgag acgttggcct tcgtaggctg tatatatttc actgctaatt
     7321 gaaaaaaggg agtaccagga tatatgaaat aaagcatttc gcaatgggaa tggcgccata
     7381 tatgtgtgtg tgtgtatata tatatatata tgtatgtata tatatatata taataaatat
     7441 atttttatcc taattcttgc ccagcgcaga actctaatac acatcttcca gggtaccagt
     7501 gttaaaacgt agagtcttac tttcctttgt atgtacacct ctttgcctgt tgctgccccc
     7561 acagacttga atgacatttc aaagtaagag ggaaataagc aaattctttt cgctttattg
     7621 actgcagtgg tcactaaacc cttttttgat agattttata ttaaaaatca gtcagctttt
     7681 ttattttcat tgcacaatgt tttaacagga acgcaacaca gaattggcaa cccctacccc
     7741 atggaaaata ctgtcactcg ttctgtctga agtaggactg cttagcaata ggccttgcta
     7801 gtgcccttct cattctccat ggtcctcggg atttctgata gtgccttagc ttaaaagaaa
     7861 aggggttaac attaactaaa cagtgtagtg tagagtttgg acctcagaca agatgctggg
     7921 ccccgttcat tttgacttcc acacatgtgt gtgcagcttc aggagtgtga gcgccttttc
     7981 aggaaaggtc tggcactgtg agcaatatag tccattgata tttaccaata aataccacct
     8041 ctgtagttaa tgtctcttaa gcttccgttt aaaatcccgt tacttgttga ggtttctaaa
     8101 atgtaagttg ccttggcaga tcatgcacca gtctgtgtgc agcttttttc cctttttaat
     8161 ttcagttggc gtttctttca agctgtgtgt gtttgcctat gtgtcgcttg cgctttattt
     8221 ttctagtcat ttgtggaata tagtgatata ttgtgttaat ttggacagtg acggtttttt
     8281 gaaaccatat actgactgaa acatgagcca gagctgattg ctttattaag ctaataatga
     8341 atgttataga gtacatattt caggatcatt catctagtga gcagtacaca tataggccaa
     8401 ttaaaaaaaa atagagcttg gtcaacctct atacttcaca tactacaaga tatagcactt
     8461 tcaaaatgaa cctaaatttc tacagaaact ttcctatatg ttatgccttt tatttttaag
     8521 acttattata ttcatttcaa gtgccattag acgatatatc cgtaggcctt tgatatataa
     8581 tgctttgtgt acaaagaata gtagatggta ttttaaacag gtacattttt acagtgtttt
     8641 cctatcgatt tgctatattg cacagaatca gtgtgtgtcc tttcataagg ttttacaatg
     8701 gtttattttt ttacaaggtt tacgtatctc aaagcacact gtcttcccag tccataagta
     8761 agttaaaaga taccagttca cccaagttgc ttctagccta ctgcgatcca tgtgacattg
     8821 aaggagatct ttgcagtgtt gaatattcgc ccttcatgaa ggcaggctgg ttttttttcc
     8881 tgacaaatga gttcgttggt gaatttgtct cgttttactc atgatgtcag cagccgggtc
     8941 taccacacaa catagcttga ttgtgtaagc ctccgtaaat accttaaatt gtattgtacc
     9001 cacagagcac tcctctgaga ttaagcaagc taatgccatc agccttcata gcaggcacgg
     9061 atcaccaata agcctttcta caatgttagc agcccctgga gatggaaggc agtgtctttt
     9121 gataagttat ctatctctat agatgacaca ggattattac tgatgtataa gacacttcat
     9181 tgtataagct tcagtggtac agatgaacca gaatgaatgt ctgtcttctc agaagccctc
     9241 cttcaacgtt ctatgggatc atgctgctac tgtcacttgg gatacaactc ttcatggtgc
     9301 tacaaacttc tgtctcattc acttgtattt ttttacccat aggaaaagga ctctataggt
     9361 gtaaaggtgt acaatatatt tttatactgt gacttaaatt gtcattaaca aacttttaca
     9421 ccaccacagt gtactcatgt gcgcttgcaa aaggagatct tggatgtgca aatgttacca
     9481 gaacaaaccc agcttttgtc cacaaggtga ctgtaactca gaatggaaag tgagcttgac
     9541 atagggtgtg gagtgaagaa catgctataa gttactaaca gccctttgaa tttaacaaaa
     9601 actgggaatc cattagagaa atggattgca tcatgcctga acataagctg actgctgaaa
     9661 tatttttttt tagctaatga aaaagtgttt ggactagtgt actctaaaaa atgttttaat
     9721 ggtaaagttt tgagtcaaat agaaatgaaa aaaaatctgc attccagact taattttgta
     9781 tatttttatt gccttttaaa ttgctattct gtgatattgg gaaatcaagt ggcttatcat
     9841 gtatatcatg tacttaaaat gtattcacaa actactgttg tatttgtata aaatatagac
     9901 aaaga
//
